ENSG00000182771:-:10:85613406:85916239

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000182771:-:10:85613406:85916239 ENSG00000182771 ENST00000327946 - 10 85613407 85916239 1875 GCCGUGGAGACCAACCUGGCUUCCAAGGACAGCCACUGGGUCUUUGUGAAUGAGGAAAUCAGUGACCCGGAGAUCCUGGAUCUGGUCCAUAGUGCCCUUGGAAGGAUGACCGUGGUCCGGCAAAUCUUUCCGUCUGCAAAGGACAAUCAGAAAUGCACGAGGAACAACCACCGCAUCUCCUCCCUGCUCUGCGACCCCCAGGAAGGCUACCUCCAGAUGCUGCAGAUCUCCAACCUCUAUCUGUAUGACAGUGUUCUGAUGCUGGCCAACGCCUUUCACAGGAAGCUGGAGGACCGGAAGUGGCAUAGCAUGGCGAGCCUCAACUGCAUACGGAAAUCCACUAAGCCAUGGAAUGGUGGGAGGUCCAUGCUGGAUACCAUCAAAAAGGGCCACAUCACUGGCCUCACUGGGGUGAUGGAGUUUCGGGAGGACAGUUCGAAUCCCUAUGUCCAGUUUGAAAUCCUUGGCACUACCUAUAGUGAGACUUUUGGCAAAGACAUGCGCAAGUUGGCGACAUGGGACUCAGAGAAGGGCUUGAAUGGCAGCUUGCAAGAGAGGCCCAUGGGCAGCCGCCUCCAAGGAUUGACUCUUAAAGUGGUGACUGUCUUGGAAGAGCCUUUCGUGAUGGUGGCUGAGAACAUCCUAGGACAGCCCAAGCGCUACAAAGGGUUCUCCAUAGAUGUCCUGGAUGCACUGGCCAAGGCUCUGGGCUUUAAAUAUGAGAUUUACCAAGCCCCUGAUGGCAGGUACGGUCACCAGCUCCAUAACACCUCCUGGAACGGGAUGAUCGGGGAGCUCAUCAGCAAGAGAGCAGACUUGGCCAUCUCUGCCAUCACCAUCACCCCAGAGAGGGAGAGCGUUGUGGACUUCAGCAAGCGGUACAUGGACUAUUCAGUGGGGAUUCUAAUUAAGAAGCCCGAGGAGAAAAUCAGCAUCUUCUCCCUCUUUGCUCCAUUUGAUUUCGCUGUGUGGGCCUGCAUUGCAGCAGCCAUCCCUGUGGUUGGUGUGCUGAUAUUUGUGUUGAACAGGAUACAGGCUGUGAGGGCUCAGAGUGCUGCCCAGCCCAGGCCGUCAGCUUCUGCCACUCUGCACAGCGCCAUCUGGAUUGUCUAUGGAGCCUUCGUACAGCAAGGUGGCGAAUCUUCCGUGAACUCCAUGGCCAUGCGCAUCGUGAUGGGCAGCUGGUGGCUCUUCACGCUCAUUGUGUGCUCCUCCUACACAGCCAACCUUGCUGCCUUCCUCACAGUGUCCAGGAUGGACAACCCCAUAAGGACUUUCCAGGACCUGUCCAAACAAGUGGAAAUGUCUUAUGGCACUGUCCGGGAUUCUGCUGUAUAUGAGUACUUCCGAGCCAAGGGCACCAACCCCCUGGAGCAGGACAGCACGUUUGCUGAACUCUGGCGGACCAUCAGCAAGAACGGAGGGGCUGACAACUGCGUGUCCAGUCCUUCAGAAGGCAUCAGGAAGGCAAAGAAGGGGAACUACGCCUUCCUGUGGGAUGUGGCCGUGGUGGAAUACGCAGCCCUGACGGAUGACGACUGCUCGGUGACUGUCAUCGGCAACAGCAUCAGCAGCAAGGGUUACGGGAUUGCCCUGCAGCAUGGCAGCCCCUACAGGGACCUCUUCUCCCAGAGGAUCCUGGAGCUGCAGGACACAGGGGACCUGGAUGUGCUGAAGCAGAAGUGGUGGCCGCACAUGGGCCGCUGUGACCUCACCAGCCAUGCCAGCGCCCAGGCCGACGGCAAAUCCCUCAAGCUGCACAGCUUCGCCGGGGUCUUCUGCAUCCUGGCCAUUGGCCUGCUCCUGGCCUGCCUGGUGGCUGCCCUGGAGUUGUGGUGGAACAGCAACCGGUGCCACCAGGAGACCCCCAAGGAGGCCGUGGAGACCAACCUGGCUUCCAAGGACAGCCACUGGGUCUUUGUGAA circ
ENSG00000182771:-:10:85613406:85916239 ENSG00000182771 ENST00000327946 - 10 85613407 85916239 22 CCCCCAAGGAGGCCGUGGAGAC bsj
ENSG00000182771:-:10:85613406:85916239 ENSG00000182771 ENST00000327946 - 10 85916230 85916439 210 AGAGCAGGAAAUCAGAUGUCUGUGUUCAGAUGAAGCUUCUUGCAGCUAAGGCAGCCAGAGCAGGCCCCAGGGGGAUGGCAUGUUUUGUGAGGAAAAUAUUCUCCAAGAACAAUGUUUAUAAAACUCUGUCUCGGCAAUCAUCCUGUGUCUGCCAGCUUCUGUCUUGCUUCUGUUCAUGUUCGUUCUUUUUCUCUCUGCAGGCCGUGGAGA ie_up
ENSG00000182771:-:10:85613406:85916239 ENSG00000182771 ENST00000327946 - 10 85613207 85613416 210 CCCCAAGGAGGUCAGCACCCUGGGGCCUGCCCUCCCUUUCACAGCCUAGAGGCAGGAGUGUCACACUGGGCCAUUGGGAGGGCAGGUUGUUUCUAGUUAGUAUUUACCUGAGUCAUCUUGUCUGGAGGCAGCAGUGUUUUAUAUUGGGGGAUUUUGUUAUUGUUUUAUUUUGUUUUUAAAACUAGAGAAGAAAUGUAGGGGAUGUUUUCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 3 407 0.002133333 0.0005912752 1.851208 AACUAC,ACUAAG,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
RBM25 1 268 0.001066667 0.0003898359 1.452171 AUCGGG AUCGGG,CGGGCA,UCGGGC
G3BP2 11 1644 0.006400000 0.0023839405 1.424724 AGGAUA,AGGAUG,AGGAUU,GGAUGA,GGAUGG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
FXR1 2 411 0.001600000 0.0005970720 1.422095 AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
NXF1 1 286 0.001066667 0.0004159215 1.358726 AACCUG AACCUG
CELF6 19 2997 0.010666667 0.0043447134 1.295776 GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGGG,UGUGGU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBFOX2 2 452 0.001600000 0.0006564894 1.285228 UGACUG UGACUG,UGCAUG
HNRNPA3 12 2140 0.006933333 0.0031027457 1.160004 AAGGAG,CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MSI1 1 23 0.09090909 0.001571915 5.853829 AGGAGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG
G3BP1 1 69 0.09090909 0.004584752 4.309509 AGGCCG ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
FMR1 1 117 0.09090909 0.007728583 3.556149 AGGAGG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF9 1 134 0.09090909 0.008842023 3.361976 GGAGGC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 3 625 0.18181818 0.041000786 2.148773 AGGAGG,GGAGGC,GGCCGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG
SRSF2 1 479 0.09090909 0.031438302 1.531901 AGGAGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP1 2 173 0.007142857 0.0008766626 3.026408 AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
SSB 5 505 0.014285714 0.0025493753 2.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA3 3 349 0.009523810 0.0017634019 2.433177 AAGGAG,CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
RC3H1 6 631 0.016666667 0.0031841999 2.387963 CUUCUG,UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 6 646 0.016666667 0.0032597743 2.354122 CGUUCU,GGUUGU,GUUCGU,GUUCUU,GUUGUU,UGUUCG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
CSTF2 8 1022 0.021428571 0.0051541717 2.055723 GUGUUU,GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AGAAGA,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF1 6 1097 0.016666667 0.0055320435 1.591081 CUGUCU,UGUCUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
NOVA2 7 1434 0.019047619 0.0072299476 1.397554 AGCACC,AGUCAU,AUCAUC,CCUAGA,GAGGCA,GAGUCA AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGU,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGGAU GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPA2B1 10 2033 0.026190476 0.0102478839 1.353716 AAGGAG,ACUAGA,CAAGAA,CAAGGA,CCAAGA,CCAAGG,GGGGCC,GUAGGG,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAAA,AGAAGA,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUG,CCUUUC,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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