ENSG00000141376:+:17:60808003:61084564

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000141376:+:17:60808003:61084564 ENSG00000141376 ENST00000589222 + 17 60808004 61084564 2022 GUGCUCAAAAAUGUGAUAACUUUGCUGAAAAAAGACCCCUCCUUGGUGUUUGUAAGAGCAUUGGAUCUUCUGGCACAAGCCCACCGUACUGUUGUGUGGAUCUGUAUUCACUUCGUACUGGGGAGAUGGUCAAGUCCAUUCAAUUUAAGACACCUAUUUAUGAUCUCCAUUGCAAUAAACGGAUCCUUGUCGUAGUCUUGCAGGAGAAAAUUGCUGCCUUUGAUAGCUGUACUUUCACGAAGAAAUUCUUUGUUACAAGCUGCUAUCCAUGUCCAGGGCCAAACAUGAAUCCUAUUGCUCUUGGGAGCCGCUGGCUUGCUUAUGCAGAAAACAAGUUGAUUCGAUGUCAUCAGUCCCGUGGUGGAGCCUGUGGAGACAACAUUCAGUCUUAUACUGCCACAGUCAUUAGUGCUGCUAAAACAUUGAAAAGUGGCCUGACAAUGGUAGGGAAAGUGGUGACUCAGCUGACAGGCACACUGCCUUCAGGUGUGACAGAAGAUGAUGUUGCCAUCCACAGUAAUUCACGGCGGAGUCCUUUGGUCCCAGGCAUCAUCACAGUUAUUGACACCGAAACCGUUGGAGAGGGCCAGGUGCUUGUGAGUGAGGAUUCUGACAGUGAUGGCAUUGUGGCCCACUUCCCUGCCCAUGAGAAGCCAGUGUGCUGCAUGGCUUUUAAUACAAGUGGAAUGCUUCUAGUCACAACAGACACCCUUGGCCAUGACUUUCAUGUCUUCCAAAUUCUGACUCAUCCUUGGUCCUCAUCACAAUGUGCUGUCCACCAUCUGUAUACUCUUCACAGGGGAGAAACUGAAGCCAAAGUACAGGACAUCUGCUUCAGCCAUGACUGUCGCUGGGUUGUGGUCAGUACUCUCCGGGGUACUUCCCACGUUUUCCCCAUCAACCCUUAUGGUGGCCAGCCUUGUGUUCGUACACAUAUGUCACCACGAGUAGUGAAUCGCAUGAGCCGUUUCCAGAAAAGUGCUGGACUGGAAGAGAUUGAACAAGAACUGACGUCUAAGCAAGGAGGUCGCUGUAGCCCUGUUCCAGGUCUAUCAAGCAGCCCUUCUGGGUCACCCUUGCAUGGGAAACUGAACAGCCAAGACUCCUAUAACAAUUUUACCAACAACAACCCUGGCAACCCUCGGCUCUCUCCUCUUCCCAGCUUGAUGGUAGUGAUGCCUCUUGCACAAAUCAAGCAGCCAAUGACAUUGGGGACCAUCACCAAACGAACCGGCAAAGUUAAACCUCCUCCACAAAUUUCACCCAGCAAAUCGAUGGGCGGAGAAUUUUGUGUGGCUGCUAUCUUCGGAACAUCCAGGUCAUGGUUUGCAAAUAAUGCAGGUCUGAAAAGAGAAAAAGAUCAGUCCAAACAAGUUGUAGUUGAGUCCCUGUACAUUAUCAGUUGCUAUGGCACCUUAGUGGAACACAUGAUGGAGCCGCGACCCCUCAGCACUGCACCCAAGAUUAGUGACGACACACCACUGGAAAUGAUGACAUCGCCUCGAGCCAGCUGGACUCUGGUUAGAACCCCUCAAUGGAAUGAAUUGCAGCCACCGUUUAAUGCAAACCACCCUCUGCUCCUCGCUGCAGAUGCAGUACAGUAUUAUCAGUUCCUGCUUGCUGGCCUGGUUCCCCCUGGAAGUCCUGGGCCCAUUACUCGACAUGGGUCUUACGACAGUUUAGCUUCUGACCAUAGUGGACAGGAAGAUGAAGAAUGGCUUUCCCAGGUUGAAAUUGUAACACACACUGGACCCCAUAGACGUCUGUGGAUGGGUCCACAGUUCCAGUUCAAAACCAUCCAUCCCUCAGGCCAAACCACAGUUAUCUCAUCCAGUUCAUCUGUGUUGCAGUCUCAUGGUCCGAGUGACACGCCACAGCCUCUUUUGGAUUUUGAUACAGAUGAUCUUGAUCUCAACAGUCUCAGGAUCCAGCCAGUCCGCUCUGACCCCGUCAGCAUGCCAGGGUCAUCCCGUCCAGUCUCUGAUCGAAGGGGAGUUUCCACAGUGAUUGAUGCUGCCUCAGGUGCUCAAAAAUGUGAUAACUUUGCUGAAAAAAGACCCCUCCUUGGUGUU circ
ENSG00000141376:+:17:60808003:61084564 ENSG00000141376 ENST00000589222 + 17 60808004 61084564 22 UGCUGCCUCAGGUGCUCAAAAA bsj
ENSG00000141376:+:17:60808003:61084564 ENSG00000141376 ENST00000589222 + 17 60807804 60808013 210 UUCAGUUUUUAAAAUGAUUACAUAUAUAUAAUAUAUGAUGAUUUUAUAUAGUAGCUUUUCUUCUUUUUAUUCAAUUGUAUAAAUUAUGUCAACUUAUAAUGAAUACUUCUCCUUUUCAAGUAUUUUGAAAGCAUGAAAAUAGUGGGAAUUAUACAAUAAUAUUCCUCAAAGCUUACAAUUUAUUUUAUCCUUCCUGUCAGGUGCUCAAAA ie_up
ENSG00000141376:+:17:60808003:61084564 ENSG00000141376 ENST00000589222 + 17 61084555 61084764 210 GCUGCCUCAGGUAGAAAACCACCUCUGAAAUAUUUAUUGGGCAGUCCUGUGCAUUUUUAACUAAUUUUCUCGCACAAUGUAGAGGAUGACAUUUAUUUGCUUUCCUCUCUGUUUUUUUGUUUUGUGGUGUGUGUGCAUUUUAAUACAGUACUGUGCCUAUAUUUCUUGCUGAACAAUGCCAUGCUUUUAAGCAUUCCUAAGGUUGGUGAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 4 411 0.0024727992 0.0005970720 2.050168 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA1L2 2 314 0.0014836795 0.0004564992 1.700495 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SNRPB2 8 991 0.0044510386 0.0014376103 1.630469 AUUGCA,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBFOX2 3 452 0.0019782394 0.0006564894 1.591373 UGACUG,UGCAUG UGACUG,UGCAUG
RBM6 8 1054 0.0044510386 0.0015289102 1.541638 AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PTBP2 1 267 0.0009891197 0.0003883867 1.348651 CUCUCU CUCUCU
RBFOX1 6 1077 0.0034619189 0.0015622419 1.147954 AGCAUG,GCAUGA,GCAUGC,UGACUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
CELF5 8 1415 0.0044510386 0.0020520728 1.117060 GUGUGG,GUGUUG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CNOT4 1 314 0.0009891197 0.0004564992 1.115533 GACAGA GACAGA
CELF4 10 1782 0.0054401583 0.0025839306 1.074081 GGUGUG,GGUGUU,GUGUGG,GUGUUG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBMY1A1 2 489 0.0014836795 0.0007101099 1.063065 ACAAGA,CAAGAC ACAAGA,CAAGAC
YBX2 8 1480 0.0044510386 0.0021462711 1.052310 AACAAC,AACAUC,ACAACA,ACAUCG,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ANKHD1 1 339 0.0009891197 0.0004927293 1.005350 AGACGU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF6 1 68 0.09090909 0.004519256 4.330267 CUCAGG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SRSF1 3 625 0.18181818 0.041000786 2.148773 CUCAGG,GGUGCU,UCAGGU AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 6 221 0.016666667 0.0011185006 3.897328 AUAUAU,UAUAUA AUAUAU,UAUAUA
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBMS1 4 217 0.011904762 0.0010983474 3.438132 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 10 562 0.026190476 0.0028365578 3.206829 AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
ZFP36L2 10 774 0.026190476 0.0039046755 2.745768 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ELAVL3 17 1928 0.042857143 0.0097188634 2.140676 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
PUM2 6 764 0.016666667 0.0038542926 2.112428 UACAUA,UAUAUA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM46 8 1091 0.021428571 0.0055018138 1.961556 AAUGAA,AAUGAU,AUGAAA,AUGAAU,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPD 11 1488 0.028571429 0.0075020153 1.929223 AAUUUA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUGUGU,GUUUUG,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF4 5 776 0.014285714 0.0039147521 1.867580 GGUGUG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ELAVL4 21 2916 0.052380952 0.0146966949 1.833551 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
TIAL1 41 5597 0.100000000 0.0282043531 1.826010 AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PPIE 68 9262 0.164285714 0.0466696896 1.815649 AAAAUA,AAAUAU,AAAUUA,AAUAAU,AAUAUA,AAUAUU,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAUAA,AUAUAU,AUAUUU,AUUAUA,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUAU,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUUA,UAUUUU,UUAAAA,UUAAUA,UUAUAA,UUAUAU,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
TIA1 35 5140 0.085714286 0.0259018541 1.726480 AUUUUC,AUUUUG,AUUUUU,CUCCUU,CUUUUA,CUUUUC,CUUUUU,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 63 9826 0.152380952 0.0495112858 1.621853 AAUUUA,AAUUUU,AUACUU,AUAUUU,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUUA,CUUUUU,GAUUUU,GUUUUU,UAAUUU,UAUAUA,UAUAUU,UAUUUA,UAUUUG,UAUUUU,UCUUUU,UGAUUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCUUU,UUGUAU,UUUAAG,UUUAAU,UUUAUA,UUUAUU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,AAUUGU,AUUGUA,UAAUAU,UACAUA,UAUAUA,UGUAGA,UGUAUA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ELAVL1 20 3309 0.050000000 0.0166767432 1.584091 AUUUAU,UAUUUA,UAUUUU,UGAUUU,UGUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GUGUGU,GUUUUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM24 4 888 0.011904762 0.0044790407 1.410277 GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
NONO 1 364 0.004761905 0.0018389762 1.372636 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM4 5 1094 0.014285714 0.0055169287 1.372636 CCUUCC,CUUCCU,CUUCUU,UCCUUC,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
KHSRP 30 5764 0.073809524 0.0290457477 1.345480 AUAUUU,AUUUAU,AUUUUA,CCUUCC,CUCCUU,CUGCCU,GUGUGU,UAUAUU,UAUUUA,UAUUUU,UCCUUC,UGCCUC,UGUAUA,UGUGUG,UUAUUU,UUGUAU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAUACA,AUACAG,UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUGU,UGUGUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
MBNL1 13 3258 0.033333333 0.0164197904 1.021530 AUGCCA,AUGCUU,CUGCCU,CUUGCU,GCUUUU,GUGCUC,UCUCGC,UGCUUU,UUGCUG,UUGCUU,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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