ENSG00000124788:-:6:16326393:16328470

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000124788:-:6:16326393:16328470 ENSG00000124788 ENST00000244769 - 6 16326394 16328470 2077 CAUCCAGAGCUGCUGUUGGCGGAUUGUACCCACGGGGAGAUGAUUCCUCAUGAAGAGCCUGGAUCCCCUACAGAAAUCAAAUGUGACUUUCCGUUUAUCAGACUAAAAUCAGAGCCAUCCAGACAGUGAAACAGUCACCGUGGAGGGGGGACGGCGAAAAAUGAAAUCCAACCAAGAGCGGAGCAACGAAUGCCUGCCUCCCAAGAAGCGCGAGAUCCCCGCCACCAGCCGGUCCUCCGAGGAGAAGGCCCCUACCCUGCCCAGCGACAACCACCGGGUGGAGGGCACAGCAUGGCUCCCGGGCAACCCUGGUGGCCGGGGCCACGGGGGCGGGAGGCAUGGGCCGGCAGGGACCUCGGUGGAGCUUGGUUUACAACAGGGAAUAGGUUUACACAAAGCAUUGUCCACAGGGCUGGACUACUCCCCGCCCAGCGCUCCCAGGUCUGUCCCCGUGGCCACCACGCUGCCUGCCGCGUACGCCACCCCGCAGCCAGGGACCCCGGUGUCCCCCGUGCAGUACGCUCACCUGCCGCACACCUUCCAGUUCAUUGGGUCCUCCCAAUACAGUGGAACCUAUGCCAGCUUCAUCCCAUCACAGCUGAUCCCCCCAACCGCCAACCCCGUCACCAGUGCAGUGGCCUCGGCCGCAGGGGCCACCACUCCAUCCCAGCGCUCCCAGCUGGAGGCCUAUUCCACUCUGCUGGCCAACAUGGGCAGUCUGAGCCAGACGCCGGGACACAAGGCUGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAUCAGCAUCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCUCAGCAGGGCUCCGGGGCUCAUCACCCCGGGGUCCCCCCCACCAGCCCAGCAGAACCAGUACGUCCACAUUUCCAGUUCUCCGCAGAACACCGGCCGCACCGCCUCUCCUCCGGCCAUCCCCGUCCACCUCCACCCCCACCAGACGAUGAUCCCACACACGCUCACCCUGGGGCCCCCCUCCCAGGUCGUCAUGCAAUACGCCGACUCCGGCAGCCACUUUGUCCCUCGGGAGGCCACCAAGAAAGCUGAGAGCAGCCGGCUGCAGCAGGCCAUCCAGGCCAAGGAGGUCCUGAACGGUGAGAUGGAGAAGAGCCGGCGGUACGGGGCCCCGUCCUCAGCCGACCUGGGCCUGGGCAAGGCAGGCGGCAAGUCGGUUCCUCACCCGUACGAGUCCAGGCACGUGGUGGUCCACCCGAGCCCCUCAGACUACAGCAGUCGUGAUCCUUCGGGGGUCCGGGCCUCUGUGAUGGUCCUGCCCAACAGCAACACGCCCGCAGCUGACCUGGAGGUGCAACAGGCCACUCAUCGUGAAGCCUCCCCUUCUACCCUCAACGACAAAAGUGGCCUGCAUUUAGGGAAGCCUGGCCACCGGUCCUACGCGCUCUCACCCCACACGGUCAUUCAGACCACACACAGUGCUUCAGAGCCACUCCCGGUGGGACUGCCAGCCACGGCCUUCUACGCAGGGACUCAACCCCCUGUCAUCGGCUACCUGAGCGGCCAGCAGCAAGCAAUCACCUACGCCGGCAGCCUGCCCCAGCACCUGGUGAUCCCCGGCACACAGCCCCUGCUCAUCCCGGUCGGCAGCACUGACAUGGAAGCGUCGGGGGCAGCCCCGGCCAUAGUCACGUCAUCCCCCCAGUUUGCUGCAGUGCCUCACACGUUCGUCACCACCGCCCUUCCCAAGAGCGAGAACUUCAACCCUGAGGCCCUGGUCACCCAGGCCGCCUACCCAGCCAUGGUGCAGGCCCAGAUCCACCUGCCUGUGGUGCAGUCCGUGGCCUCCCCGGCGGCGGCUCCCCCUACGCUGCCUCCCUACUUCAUGAAAGGCUCCAUCAUCCAGUUGGCCAACGGGGAGCUAAAGAAGGUGGAAGACUUAAAAACAGAAGAUUUCAUCCAGAGUGCAGAGAUAAGCAACGACCUGAAGAUCGACUCCAGCACCGUAGAGAGGAUUGAAGACAGCCAUAGCCCGGGCGUGGCCGUGAUACAGUUCGCCGUCGGGGAGCACCGAGCCCAGCAUCCAGAGCUGCUGUUGGCGGAUUGUACCCACGGGGAGAUGAUUCCUCA circ
ENSG00000124788:-:6:16326393:16328470 ENSG00000124788 ENST00000244769 - 6 16326394 16328470 22 ACCGAGCCCAGCAUCCAGAGCU bsj
ENSG00000124788:-:6:16326393:16328470 ENSG00000124788 ENST00000244769 - 6 16328461 16328670 210 CCAAAGUGUUGGCUAGUGUUUUCUCUGCUUCAGUGCUUGGGGUAUGAUUGGGUUAUGGGAGUUCACACCGAGUCCAGGGCCUAGUCUUAAUCUUGCCAAAGAUGUUCUUUCCCCGGUGCUCAUGUUCUGAUGUCCUUUCCCUCCUUCCCUUUCUCCUCCCUUUCCUUUUCCCUUUGUCACUGCCCUCUUCCCUUUCCCAGCAUCCAGAGC ie_up
ENSG00000124788:-:6:16326393:16328470 ENSG00000124788 ENST00000244769 - 6 16326194 16326403 210 CCGAGCCCAGGUAACGUUAGCCAGGGUGGCACAGGGAUGGGACACCACACCGUGAUGCCAUCAUCAUCUCCUGGCAAGACGAAUUGCUUCUAUGAGGCAGGAUUAAGGGUUCUCGGGUACACCUAGACCUUAGACUCGGCCUUUCCCAACUGCGUUCUCUAGAAAAAAUAAGCCCCAUUUCCCCGUGAUCUCUGCUGUGUGUAAUGAAUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 2 199 0.0014443909 0.0002898408 2.317129 CCGCCC CCGCCC
RBM6 12 1054 0.0062590274 0.0015289102 2.033435 AAUCCA,AUCCAA,AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
G3BP1 150 14282 0.0727010111 0.0206989801 1.812416 ACACGC,ACAGGC,ACCCAC,ACCCCC,ACCGGC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCC,CAGGCA,CAGGCC,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAG,CCAUCC,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGGCA,CCGGCC,CCUACG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCG,CUACGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UCCGCA,UCGGCA,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
IGF2BP1 7 831 0.0038517092 0.0012057377 1.675583 ACCCGU,AGCACC,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPA1L2 2 314 0.0014443909 0.0004564992 1.661777 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
IFIH1 7 904 0.0038517092 0.0013115296 1.554248 GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ANKHD1 2 339 0.0014443909 0.0004927293 1.551594 AGACGA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ZC3H10 7 1053 0.0038517092 0.0015274610 1.334363 CAGCGA,CAGCGC,CCAGCG,GAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM25 1 268 0.0009629273 0.0003898359 1.304560 CGGGCA AUCGGG,CGGGCA,UCGGGC
HNRNPK 65 9304 0.0317766009 0.0134848428 1.236626 ACCCCA,ACCCCC,ACCCGA,ACCCGU,CAACCC,CAUCCC,CCAACC,CCAUCC,CCCCAA,CCCCAC,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCC,UCCCCU,UCCCUA AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YBX1 1 19 0.09090909 0.001309929 6.116864 CCAGCA AACCAC,ACACCA,ACAUCU,ACCACC,CACCAC,CAGCAA,CCACCA,CCAGCA,CCUGCG,CUGCGG,GAUCUG,GCCUGC,UCCAGC,UGCGGU
SRSF1 2 625 0.13636364 0.041000786 1.733736 CCAGCA,CCCAGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 56 0.007142857 0.0002871826 4.636461 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZNF638 6 646 0.016666667 0.0032597743 2.354122 CGUUCU,GGUUCU,GUUCUU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPLL 7 748 0.019047619 0.0037736800 2.335567 ACACCA,ACCACA,AGACGA,CACACC,CACCAC,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
YBX1 11 1321 0.028571429 0.0066606207 2.100845 ACACCA,ACCACA,AUCAUC,CACACC,CACCAC,CAUCAU,CCACAC,CCAGCA AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUU,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RC3H1 4 631 0.011904762 0.0031841999 1.902536 UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGU,GUGUUG,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAAAA,AAAGUG,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GUGUGU,GUGUUG,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACG,AGACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SART3 3 777 0.009523810 0.0039197904 1.280762 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAA,ACACCA,ACCACA,CACACC,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUCUU,CCUUCC,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG
MBNL1 13 3258 0.033333333 0.0164197904 1.021530 AUGCCA,CUGCCC,CUGCUG,CUGCUU,GUGCUC,GUGCUU,UCUGCU,UGCUGU,UGCUUC,UUGCCA,UUGCUU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
PTBP1 33 8003 0.080952381 0.0403264813 1.005346 CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUCUUC,CUUUCC,CUUUCU,CUUUUC,GCUGUG,GUCUUA,UCUUUC,UUCCCC,UUCCUU,UUCUCU,UUCUUU,UUUCCC,UUUUCC,UUUUCU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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