circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000197157:+:7:127929187:127991056
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000197157:+:7:127929187:127991056 | ENSG00000197157 | ENST00000354725 | + | 7 | 127929188 | 127991056 | 252 | GAUACCCAAAAAGCAAAGCAGUUCCUGCCUUUUCUUCAGCGGGCAGGUCGUUCUGAAGCUGUGGUGGAAUACGUCUUCAGUGGUUCUCGUCUCAAACUCUAUUUGCCAAAGGAAACUUGCCUUAUCACCUUCUUGCUUGCAGGCAUUGAAUGCCCCAGAGGAGCCCGAAACCUCCCAGGCUUGGUGCAGGAAGGAGAGCCCUUCAGCGAGGAAGCUACACUUUUCACCAAGGAACUGGUGCUGCAGCGAGAGGAUACCCAAAAAGCAAAGCAGUUCCUGCCUUUUCUUCAGCGGGCAGGUCG | circ |
| ENSG00000197157:+:7:127929187:127991056 | ENSG00000197157 | ENST00000354725 | + | 7 | 127929188 | 127991056 | 22 | UGCAGCGAGAGGAUACCCAAAA | bsj |
| ENSG00000197157:+:7:127929187:127991056 | ENSG00000197157 | ENST00000354725 | + | 7 | 127928988 | 127929197 | 210 | AGUUAAUCUGGAAACUGUCGAUUAACUAUAUUUCUUCUACUGAGGCCUCAUGGGUAUCAUGUCUAUGUCUUGGUUUCAGAAAUGUCUAUAAAUAGGGUUAUUUGCUUAGCUUCCUGCCAAACUUUUUGUCCUAGACUAUAAAGAAAGAAACGUUGGGUUUUAUUACUUUCCAGUUACUCUUUUCCUCUUUUCUCCAUCAGGAUACCCAAA | ie_up |
| ENSG00000197157:+:7:127929187:127991056 | ENSG00000197157 | ENST00000354725 | + | 7 | 127991047 | 127991256 | 210 | GCAGCGAGAGGUAGGACAUCUUCCUGUUGCUUCUUCUGUGAGGAGGGGUGACAAAAUAAGGCUCCCUUGGUCUGCCAUGUCAGAGAUCAGUCUGUUGUUUUUUCCACUGCUCAGCCUUGCACAUCCAUAAUCCAUUCUUGUGUCUGCCCACAUCUUAUUUCCCUGAGCGCUGCUUCAUUGGCCAGCCACCCCCAAAUUGCUCCCCUCCAC | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBM25 | 1 | 268 | 0.007936508 | 0.0003898359 | 4.347566 | CGGGCA | AUCGGG,CGGGCA,UCGGGC |
| NONO | 5 | 1498 | 0.023809524 | 0.0021723567 | 3.454206 | AGAGGA,AGGAAC,GAGAGG,GAGGAA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| HNRNPM | 3 | 999 | 0.015873016 | 0.0014492040 | 3.453244 | AAGGAA,GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| ZC3H10 | 3 | 1053 | 0.015873016 | 0.0015274610 | 3.377369 | CAGCGA,GCAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| HNRNPA3 | 5 | 2140 | 0.023809524 | 0.0031027457 | 2.939921 | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GGAGCC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| SNRPB2 | 1 | 991 | 0.007936508 | 0.0014376103 | 2.464832 | UUGCAG | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| ZNF638 | 2 | 1773 | 0.011904762 | 0.0025708878 | 2.211200 | CGUUCU,GGUUCU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| RC3H1 | 2 | 1786 | 0.011904762 | 0.0025897275 | 2.200667 | CCCUUC,CCUUCU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| PABPC4 | 1 | 1251 | 0.007936508 | 0.0018144033 | 2.129009 | AAAAAG | AAAAAA,AAAAAG |
| ACO1 | 1 | 1283 | 0.007936508 | 0.0018607779 | 2.092599 | CAGUGG | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| YTHDC1 | 7 | 5576 | 0.031746032 | 0.0080822104 | 1.973754 | GAAUAC,GAAUGC,GGAUAC,UCCUGC,UGCUGC,UGGUGC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| RBMX | 6 | 4925 | 0.027777778 | 0.0071387787 | 1.960182 | AAGGAA,AGGAAG,GAAGGA,GGAAGG | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| RBM3 | 2 | 2152 | 0.011904762 | 0.0031201361 | 1.931858 | AAUACG,GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| RBM4 | 3 | 3065 | 0.015873016 | 0.0044432593 | 1.836886 | CCUUCU,CUUCUU,UUCUUG | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| G3BP2 | 1 | 1644 | 0.007936508 | 0.0023839405 | 1.735156 | AGGAUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| HNRNPA2B1 | 9 | 8607 | 0.039682540 | 0.0124747476 | 1.669494 | AAGGAA,AAGGAG,AGGAAC,AGGAGC,CAAGGA,CCAAGG,GAAGGA,GGAGCC | AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA |
| HNRNPA1 | 19 | 18070 | 0.079365079 | 0.0261885646 | 1.599567 | AAGGAG,AGAGGA,AGGAAG,AGGAGC,AGUGGU,CAAGGA,CCAAGG,GAGGAA,GAGGAG,GCAGGC,GGAAGG,GGAGCC,GGCAGG,GGGCAG,GUGGUG,UGGUGC | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
| TRA2B | 7 | 7329 | 0.031746032 | 0.0106226650 | 1.579431 | AAGGAA,AGGAAA,AGGAAG,GAAGGA,GGAAGG | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| MSI1 | 2 | 2770 | 0.011904762 | 0.0040157442 | 1.567800 | AGGAAG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| SRSF4 | 3 | 3740 | 0.015873016 | 0.0054214720 | 1.549820 | AGGAAG,GAGGAA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| CELF6 | 2 | 2997 | 0.011904762 | 0.0043447134 | 1.454206 | GUGGUG,UGUGGU | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| ZRANB2 | 2 | 3173 | 0.011904762 | 0.0045997733 | 1.371904 | GUGGUG,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| CPEB2 | 1 | 2261 | 0.007936508 | 0.0032780993 | 1.275645 | CCUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| TRA2A | 5 | 6871 | 0.023809524 | 0.0099589296 | 1.257476 | AGAGGA,AGGAAG,GAGGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| RBM5 | 5 | 6879 | 0.023809524 | 0.0099705232 | 1.255798 | AAGGAA,AAGGAG,CAAGGA,GAAGGA | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| DAZAP1 | 4 | 5964 | 0.019841270 | 0.0086445016 | 1.198650 | AGGAAA,AGGAAG,AGGAUA | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| SFPQ | 19 | 24050 | 0.079365079 | 0.0348548043 | 1.187147 | AAGCAA,AAGGAA,AGAGGA,AGGAAC,CAGGCA,GAAGGA,GAGAGG,GAGGAA,GCAGGC,GGAGAG,GUGGUG,GUGGUU,UGAAGC,UGCAGG,UGGUGG,UUGGUG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| SNRPA | 5 | 7380 | 0.023809524 | 0.0106965744 | 1.154390 | AGCAGU,AGGAGA,GAUACC,UCCUGC,UUCCUG | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
| SRSF10 | 10 | 13860 | 0.043650794 | 0.0200874160 | 1.119716 | AAAGGA,AAGGAA,AAGGAG,AGAGGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF9 | 15 | 20254 | 0.063492063 | 0.0293536261 | 1.113038 | AGGAAA,AGGAAC,AGGAGA,AGGAGC,GAAGGA,GGAAGC,GGAAGG,GGAGAG,GGAGCC,GGUGCA,GGUGGA,UGAAGC,UGGUGC,UGGUGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| ZFP36 | 21 | 28400 | 0.087301587 | 0.0411588414 | 1.084806 | AAAAAG,AAAAGC,AAAGCA,AAAGGA,AAGCAA,AAGGAA,ACCUCC,ACCUUC,ACUUGC,ACUUUU,AGCAAA,AGGAAA,CAAGGA,CCCUUC,CCUUCU,CCUUUU,GCAAAG,UCCUGC,UCUUGC | AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU |
| PTBP1 | 12 | 16854 | 0.051587302 | 0.0244263326 | 1.078579 | ACUUUU,AGCUGU,CCUUUU,CUUCUU,CUUUUC,GCUGUG,UUCUUC,UUCUUG,UUUCUU,UUUUCU | ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU |
| SRSF7 | 10 | 14481 | 0.043650794 | 0.0209873716 | 1.056486 | AAAGGA,AGAGGA,AGGAAG,CGAGAG,GAGGAA,GGAAGG,UCUUCA | AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA |
| TARDBP | 1 | 2654 | 0.007936508 | 0.0038476365 | 1.044532 | UGAAUG | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| SAMD4A | 2 | 3992 | 0.011904762 | 0.0057866714 | 1.040733 | CGGGCA,GCGGGC | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| MBNL1 | 9 | 13372 | 0.039682540 | 0.0193802045 | 1.033921 | AUGCCC,CUGCCU,CUUGCU,GCUUGC,GUGCUG,UGCUGC,UUGCCA,UUGCCU,UUGCUU | ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU |
| NOVA2 | 2 | 4013 | 0.011904762 | 0.0058171047 | 1.033166 | AGGCAU,AUCACC | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPC | 1 | 5 | 0.09090909 | 0.0003929788 | 7.853829 | GGAUAC | GGAUAU,GGAUUC,GGGUAC |
| NONO | 2 | 11 | 0.13636364 | 0.0007859576 | 7.438792 | AGAGGA,GAGAGG | AGAGGA,AGGAAC,GAGGAA |
| G3BP2 | 1 | 9 | 0.09090909 | 0.0006549646 | 7.116864 | AGGAUA | AGGAUA,AGGAUG,AGGAUU,GGAUGA,GGAUGG,GGAUUG |
| YTHDC1 | 1 | 20 | 0.09090909 | 0.0013754257 | 6.046474 | GGAUAC | GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC |
| DAZAP1 | 1 | 36 | 0.09090909 | 0.0024233691 | 5.229338 | AGGAUA | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA |
| TRA2A | 1 | 54 | 0.09090909 | 0.0036023055 | 4.657432 | AGAGGA | AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| SFPQ | 2 | 153 | 0.13636364 | 0.0100864553 | 3.756968 | AGAGGA,GAGAGG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| SRSF10 | 2 | 160 | 0.13636364 | 0.0105449306 | 3.692837 | AGAGGA,GAGAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| FMR1 | 1 | 117 | 0.09090909 | 0.0077285827 | 3.556149 | GAGGAU | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| HNRNPA1 | 1 | 119 | 0.09090909 | 0.0078595756 | 3.531901 | AGAGGA | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| SRSF7 | 1 | 128 | 0.09090909 | 0.0084490438 | 3.427565 | AGAGGA | AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA |
| SRSF1 | 3 | 625 | 0.18181818 | 0.0410007860 | 2.148773 | AGAGGA,GAGGAU,GGAUAC | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 2 | 479 | 0.13636364 | 0.0314383023 | 2.116864 | AGAGGA,GAGAGG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| ZC3H10 | 3 | 140 | 0.009523810 | 0.0007103990 | 3.744837 | CAGCGA,GAGCGC,GCAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| MATR3 | 3 | 216 | 0.009523810 | 0.0010933091 | 3.122837 | AUCUUA,CAUCUU | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| HNRNPA1L2 | 2 | 188 | 0.007142857 | 0.0009522370 | 2.907109 | AUAGGG,UAGGGU | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| RBM6 | 2 | 191 | 0.007142857 | 0.0009673519 | 2.884389 | AAUCCA,CAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| ERI1 | 2 | 228 | 0.007142857 | 0.0011537686 | 2.630147 | UUCAGA,UUUCAG | UUCAGA,UUUCAG |
| YBX2 | 2 | 263 | 0.007142857 | 0.0013301088 | 2.424957 | ACAUCU | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| AGO1 | 2 | 283 | 0.007142857 | 0.0014308746 | 2.319604 | AGGUAG,GAGGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RC3H1 | 4 | 631 | 0.011904762 | 0.0031841999 | 1.902536 | CUUCUG,UCCCUU,UCUGUG,UUCUGU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| RBM3 | 3 | 541 | 0.009523810 | 0.0027307537 | 1.802240 | AGACUA,GAAACG,GAAACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| RBM4 | 7 | 1094 | 0.019047619 | 0.0055169287 | 1.787673 | CCUCUU,CUCUUU,CUUCCU,CUUCUU,UUCUUG | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| ZNF638 | 3 | 646 | 0.009523810 | 0.0032597743 | 1.546767 | CGUUGG,GUUGUU,UGUUGU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| TRA2A | 6 | 1133 | 0.016666667 | 0.0057134220 | 1.544539 | AAAGAA,AAGAAA,AGAAAG,GAAAGA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| RBM41 | 2 | 502 | 0.007142857 | 0.0025342604 | 1.494937 | UACUUU,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| HNRNPAB | 1 | 351 | 0.004761905 | 0.0017734784 | 1.424957 | GACAAA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| CELF2 | 4 | 881 | 0.011904762 | 0.0044437727 | 1.421682 | GUCUGU,GUUGUU,UGUUGU,UUGUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| NONO | 1 | 364 | 0.004761905 | 0.0018389762 | 1.372636 | GAGAGG | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| ZFP36L2 | 3 | 774 | 0.009523810 | 0.0039046755 | 1.286336 | UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| PTBP1 | 40 | 8003 | 0.097619048 | 0.0403264813 | 1.275435 | ACUUUC,ACUUUU,AUCUUC,CAUCUU,CCUCUU,CUCCAU,CUCCCC,CUCUUU,CUUCCU,CUUCUU,CUUUCC,CUUUUC,CUUUUU,GCUCCC,GGCUCC,UACUUU,UCCAUC,UCCUCU,UCUUCU,UCUUUU,UUACUU,UUAUUU,UUCUUC,UUCUUG,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU | ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU |
| PABPC5 | 2 | 596 | 0.007142857 | 0.0030078597 | 1.247764 | AGAAAG,AGAAAU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| A1CF | 2 | 598 | 0.007142857 | 0.0030179363 | 1.242939 | AUCAGU,GAUCAG | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| MBNL1 | 15 | 3258 | 0.038095238 | 0.0164197904 | 1.214175 | CGCUGC,CUGCCA,CUGCCC,CUGCUC,CUGCUU,CUUGUG,GCGCUG,GCUGCU,UGCUUC,UUGCUC,UUGCUU,UUUGCU | ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU |
| SRSF3 | 17 | 3825 | 0.042857143 | 0.0192765014 | 1.152692 | AACUUU,AGAGAU,AUCUUC,CACAUC,CAGAGA,CCUCUU,CUUCAU,CUUCUU,GCUUCA,UCAGAG,UCGAUU,UCUCCA,UCUUCC,UUCUCC,UUCUUC | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
| U2AF2 | 4 | 1071 | 0.011904762 | 0.0054010480 | 1.140228 | UUUUCC,UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| SNRPA | 8 | 1947 | 0.021428571 | 0.0098145909 | 1.126536 | GAUACC,GGGUAU,UCCUGC,UGCACA,UUCCUG,UUGCAC,UUUCCU | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
| YBX1 | 5 | 1321 | 0.014285714 | 0.0066606207 | 1.100845 | ACAUCU,GGUCUG,GUCUGC | AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.