ENSG00000131697:-:1:5961793:5986327

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000131697:-:1:5961793:5986327 ENSG00000131697 ENST00000489180 - 1 5961794 5986327 711 AUCAUCCGGGAAGCCCACGGGACCCUCAGGCGGGCAGGAUGAACGACUGGCACAGGAUCUUCACCCAAAACGUGCUUGUCCCUCCCCACCCACAGAGAGCGCGCCAGCCUUGGAAGGAAUCCACGGCAUUCCAGUGUGUCCUCAAGUGGCUGGACGGACCGGUAAUUAGGCAGGGCGUGCUGGAGGUACUGUCAGAGGUUGAAUGCCAUCUGCGAGUGUCUUUCUUUGAUGUCACCUACCGGCACUUCUUUGGGAGGACGUGGAAAACCACAGUGAAGCCGACGAAGAGACCGCCGUCCAGGAUCGUCUUUAAUGAGCCCUUGUAUUUUCACACAUCCCUAAACCACCCUCAUAUCGUGGCUGUGGUGGAAGUGGUCGCUGAGGGCAAGAAACGGGAUGGGAGCCUCCAGACAUUGUCCUGUGGGUUUGGAAUUCUUCGGAUCUUCAGCAACCAGCCGGACUCUCCUAUCUCUGCUUCCCAGGACAAAAGGUUGCGGCUGUACCAUGGCACCCCCAGAGCCCUCCUGCACCCGCUUCUCCAGGACCCCGCAGAGCAAAACAGACACAUGACCCUCAUUGAGAACUGCAGCCUGCAGUACACGCUGAAGCCACACCCGGCCCUGGAGCCUGCGUUCCACCUUCUUCCUGAGAACCUUCUGGUGUCUGGUCUGCAGCAGAUACCUGGCCUGCUUCCAGCUCAUGGAGAAUCCGAUCAUCCGGGAAGCCCACGGGACCCUCAGGCGGGCAGGAUGAACGACUGG circ
ENSG00000131697:-:1:5961793:5986327 ENSG00000131697 ENST00000489180 - 1 5961794 5986327 22 UGGAGAAUCCGAUCAUCCGGGA bsj
ENSG00000131697:-:1:5961793:5986327 ENSG00000131697 ENST00000489180 - 1 5986318 5986527 210 UUGAAAUGCAAAUGGUACUUCCUAGAGGAGGCAGCAUGGGUGCCAGCCAGCAACAAAGUCCACUCUUCUGGGGUUUGCAGAGUGUGGGUUUGGGGGAUGGAGGUUCCUCUGGGAUUUAGUGGGAGGCAGAAGCCUUCAGGAUUGCUGUGACCACUGUAGCCCUCACAGCUCUUCUCUUUAUUUGAAUACGACUGGCACAGAUCAUCCGGG ie_up
ENSG00000131697:-:1:5961793:5986327 ENSG00000131697 ENST00000489180 - 1 5961594 5961803 210 GGAGAAUCCGGUAAGGGCGUCUUUGAUUCUCUCCACUUGGUGAGGUGAGUCUGUCCUAGUUCACAGUGAAACCUUGAAGGCACUGGGCUCUUCUGGGGGCAGCGUGGGCCGAGCGCCCCUCUGCAGCUCAGCAGCACGGCCUGGCGGGGGUUGUGGGGGACAGUGGAGGAGGAUGGAAUGGCAGUCUAGUUUCCGUUUCCCUCCUAAAUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DDX58 1 71 0.002812940 0.0001043427 4.752677 GCGCGC GCGCGC
RBM25 1 268 0.002812940 0.0003898359 2.851140 CGGGCA AUCGGG,CGGGCA,UCGGGC
RBM14 2 478 0.004219409 0.0006941687 2.603683 CGCGCC,GCGCGC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
IGF2BP1 4 831 0.007032349 0.0012057377 2.544091 CACCCG,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ANKHD1 1 339 0.002812940 0.0004927293 2.513211 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM8A 2 611 0.004219409 0.0008869128 2.250177 CGCGCC,GCGCGC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PPRC1 2 780 0.004219409 0.0011318283 1.898386 CGCGCC,GCGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
AGO1 1 548 0.002812940 0.0007956130 1.821940 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
EIF4B 3 1179 0.005625879 0.0017100607 1.718031 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 3 1234 0.005625879 0.0017897669 1.652307 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SAMD4A 11 3992 0.016877637 0.0057866714 1.544307 CGGGAA,CGGGAC,CGGGCA,CUGGAC,CUGGCA,CUGGCC,CUGGUC,GCGGGC,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPM 2 999 0.004219409 0.0014492040 1.541780 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TUT1 1 678 0.002812940 0.0009840095 1.515334 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
YBX1 17 7119 0.025316456 0.0103183321 1.294866 AACCAC,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CAGCAA,CAUCUG,CCACAC,CCUGCG,GCCUGC,GGUCUG,GUCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
G3BP1 34 14282 0.049226442 0.0206989801 1.249874 ACACGC,ACCCAC,ACCCCC,ACCCGC,ACCGGC,AGGCAG,CACAGG,CACCCG,CAUCCG,CCACAC,CCACAG,CCACCC,CCCACA,CCCACC,CCCACG,CCCAGG,CCCCAC,CCCCAG,CCCCCA,CCCCGC,CCCGCA,CCCGGC,CCCUCC,CCGCAG,CCGCCG,CCGGCA,CCGGCC,CGGCAC,CGGCCC,UAGGCA ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
G3BP2 3 1644 0.005625879 0.0023839405 1.238730 AGGAUG,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ACO1 2 1283 0.004219409 0.0018607779 1.181135 CAGUGA,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM4 6 3065 0.009845288 0.0044432593 1.147815 CCUUCU,CUUCCU,CUUCUU,GCGCGC CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
RC3H1 3 1786 0.005625879 0.0025897275 1.119278 CCUUCU,CUUCUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
IFIH1 1 904 0.002812940 0.0013115296 1.100828 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ZRANB2 6 3173 0.009845288 0.0045997733 1.097871 AAAGGU,AGGUAC,CGGUAA,GAGGUU,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM46 1 14 0.09090909 0.0009824469 6.531901 GAUCAU AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZC3H10 3 140 0.009523810 0.0007103990 3.744837 CGAGCG,GAGCGC,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
G3BP2 5 490 0.014285714 0.0024738009 2.529772 AGGAUG,AGGAUU,GGAUGG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 AGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
LIN28A 5 900 0.014285714 0.0045395002 1.653968 GGAGAA,GGAGGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPH2 18 3198 0.045238095 0.0161174929 1.488911 CGGGGG,CUGGGG,GGAAUG,GGAGGA,GGGAGG,GGGCGU,GGGGGA,GGGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM24 4 888 0.011904762 0.0044790407 1.410277 AGAGUG,AGUGUG,GAGUGU,GUGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAUACG,AUACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGAGGA AGAGGA,AGGAAC,GAGAGG,GAGGAA
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGAGG,GUGGGG,GUGUGG,UGUGGG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPH1 16 3406 0.040476190 0.0171654575 1.237565 CGGGGG,CUGGGG,GGAAUG,GGAGGA,GGGAGG,GGGCGU,GGGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SRSF6 22 5069 0.054761905 0.0255441354 1.100181 CACUGG,CAGCAC,CCACUC,CCACUG,CCUCAC,CCUCUG,CCUGGC,CUCUGG,CUUCAG,CUUCUC,CUUCUG,GCAGCA,UCACAG,UCAUCC,UCUCUC,UUCAGG,UUCUGG AACCUG,AAGAAG,ACCGGG,ACCGUC,ACCUGG,AGAAGA,AGCACC,AGCGGA,AGGAAG,AUCAAC,AUCCUG,AUCGUA,CAACCU,CACACG,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CAUCCU,CCACAC,CCACAG,CCACUC,CCACUG,CCCGGC,CCUCAC,CCUCAG,CCUCUC,CCUCUG,CCUGGC,CGCGUC,CUACAC,CUACAG,CUACUC,CUACUG,CUCACG,CUCAGG,CUCAUC,CUCUCG,CUCUGG,CUUCAC,CUUCAG,CUUCUC,CUUCUG,GAAGAA,GACGUC,GAGGAA,GAUCAA,GCACCU,GCAGCA,GCCGGA,GCCGUC,GCUCAU,GGAAGA,UACACG,UACAGG,UACGUC,UACUCG,UACUGG,UCAACC,UCACAC,UCACAG,UCACUC,UCACUG,UCAUCC,UCCGGA,UCCUGG,UCUCAC,UCUCAG,UCUCUC,UCUCUG,UGCGGA,UGCGGC,UGCGUA,UGCGUC,UGCGUG,UGUGGA,UUACAC,UUACAG,UUACUC,UUACUG,UUCACG,UUCAGG,UUCUCG,UUCUGG,UUUCAC,UUUCAG,UUUCUC,UUUCUG
HNRNPF 14 3360 0.035714286 0.0169336961 1.076604 CGGGGG,CUGGGG,GGAAUG,GGAGGA,GGAUGG,GGGAGG,GGGAUG,GGGGGC,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH3 10 2496 0.026190476 0.0125806127 1.057840 CGGGGG,GGAAUG,GGAGGA,GGGAGG,GGGCGU,GGGGGC,UGGGUG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
SRSF9 19 4608 0.047619048 0.0232214833 1.036079 GAAGCC,GAAGGC,GAUGGA,GGACAG,GGAGAA,GGAGGA,GGAGGC,GGAUGG,GGGAGG,GGGUGC,GGUGCC,UGAAGG,UGACCA,UGGAGG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
RBM5 9 2359 0.023809524 0.0118903668 1.001746 CUCUUC,CUUCUC,UCUUCU,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home