ENSG00000141551:-:17:82252433:82253244

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000141551:-:17:82252433:82253244 ENSG00000141551 ENST00000581241 - 17 82252434 82253244 400 AUCAGUCGCAUCGAAUACAUUCAUUCAAAGAACUUCAUCCACCGGGAUGUGAAGCCAGACAACUUCCUCAUGGGCCUGGGGAAGAAGGGCAACCUGGUGUACAUCAUCGACUUCGGGCUGGCCAAGAAGUACCGGGAUGCACGCACCCACCAGCACAUCCCCUAUCGUGAGAACAAGAACCUCACGGGGACGGCGCGGUACGCCUCCAUCAACACGCACCUUGGAAUUGAACAAUCCCGAAGAGAUGACUUGGAGUCUCUGGGCUACGUGCUAAUGUACUUCAACCUGGGCUCUCUCCCCUGGCAGGGGCUGAAGGCUGCCACCAAGAGACAGAAAUACGAAAGGAUUAGCGAGAAGAAAAUGUCCACCCCCAUCGAAGUGUUGUGUAAAGGCUACCCUUAUCAGUCGCAUCGAAUACAUUCAUUCAAAGAACUUCAUCCACCGGGAUGU circ
ENSG00000141551:-:17:82252433:82253244 ENSG00000141551 ENST00000581241 - 17 82252434 82253244 22 AGGCUACCCUUAUCAGUCGCAU bsj
ENSG00000141551:-:17:82252433:82253244 ENSG00000141551 ENST00000581241 - 17 82253235 82253444 210 AGGGUGGAGUGUGGAGGGUUGCUGCAGGCACCUGGGGGAACAAUUUGGUCAGUUCGGCAUCCCCCUCGCUAAUUGUUAAACUACCCUGCUGUGGCUGAGGGGCAGGAACAAUGCAGCCACUGAUGUAGUGUCCCACAGUUGAGCGGUCCCUCCCUGAGACUGCCCUGGGGUGCCAUCUCGCGCCCUUGCUCUGCUCACAGAUCAGUCGCA ie_up
ENSG00000141551:-:17:82252433:82253244 ENSG00000141551 ENST00000581241 - 17 82252234 82252443 210 GGCUACCCUUGUAAGUCUCUGGAGGCCUCUUCUCAGCGGAGCUGCUCACAGGGGUUGCAUAUGUGUCGGGUGUGCCGAGACGGCUCAGUCUGGGUUUUGUCAGAAGAGUUGCUCACCUUCCAAAGGGGUGGUGGCAGGAAAGCGGGGCGCUUUUGUGUAUGGAGGUAACAGCCUGCCCUCCUGUUCAUCUUGACUUACUUGCCAAGUGCC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 2 286 0.0075 0.0004159215 4.172507 AACCUG AACCUG
PTBP2 1 267 0.0050 0.0003883867 3.686363 CUCUCU CUCUCU
RBM25 1 268 0.0050 0.0003898359 3.680989 UCGGGC AUCGGG,CGGGCA,UCGGGC
CNOT4 1 314 0.0050 0.0004564992 3.453244 GACAGA GACAGA
SRSF11 2 688 0.0075 0.0009985015 2.909054 AAGAAG AAGAAG
RBM14 1 478 0.0050 0.0006941687 2.848570 GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBMY1A1 1 489 0.0050 0.0007101099 2.815814 ACAAGA ACAAGA,CAAGAC
PPRC1 2 780 0.0075 0.0011318283 2.728235 CGGCGC,GGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
EIF4B 3 1179 0.0100 0.0017100607 2.547881 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TUT1 1 678 0.0050 0.0009840095 2.345184 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PUM2 4 1890 0.0125 0.0027404447 2.189446 GUACAU,UACAUC,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
IGF2BP1 1 831 0.0050 0.0012057377 2.052012 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
NOVA1 8 3872 0.0225 0.0056127669 2.003141 AUCAAC,AUCAUC,AUUCAU,CAUUCA,UCAGUC,UCAUUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RBM41 2 1318 0.0075 0.0019115000 1.972185 AUACAU,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
CELF1 4 2391 0.0125 0.0034664959 1.850378 GUGUUG,GUUGUG,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
YBX2 2 1480 0.0075 0.0021462711 1.805058 ACAACU,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NELFE 5 3028 0.0150 0.0043896388 1.772788 CUCUCU,CUCUGG,GUCUCU,UCUCUC,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM6 1 1054 0.0050 0.0015289102 1.709424 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SRSF3 30 16536 0.0775 0.0239654858 1.693238 ACAUCA,ACAUUC,ACUUCA,ACUUCG,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUUCAU,CACAUC,CAUCAA,CAUCAU,CAUCGA,CAUUCA,CCACCA,CUUCAA,CUUCAU,GACUUC,UACAUC,UACUUC,UCAUCC,UCAUCG,UCGACU,UUCAAC,UUCAUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
SRSF4 6 3740 0.0175 0.0054214720 1.690598 AAGAAG,AGAAGA,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ESRP2 3 2150 0.0100 0.0031172377 1.681660 GGGAAG,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
G3BP2 2 1644 0.0075 0.0023839405 1.653542 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPAB 2 1782 0.0075 0.0025839306 1.537323 AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC5 3 2400 0.0100 0.0034795387 1.523032 AGAAAA,AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPN1 1 1222 0.0050 0.0017723764 1.496243 AGAAGA AAAAGA,AGAAGA
SNRNP70 1 1237 0.0050 0.0017941145 1.478656 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF2 2 1886 0.0075 0.0027346479 1.455536 UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ENOX1 4 3195 0.0125 0.0046316558 1.432328 AAUACA,AGACAG,CAGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
FXR2 4 3434 0.0125 0.0049780156 1.328285 AGACAA,AGACAG,GACAGA,GGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
IGF2BP3 6 4815 0.0175 0.0069793662 1.326187 AAAUAC,AAUACA,ACAAUC,ACAUUC,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBMX 6 4925 0.0175 0.0071387787 1.293606 AAGAAG,AAGUGU,AGAAGG,AGUGUU,AUCCCC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF5 1 1415 0.0050 0.0020520728 1.284846 GUGUUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM3 2 2152 0.0075 0.0031201361 1.265282 AAUACG,AUACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PUM1 7 5823 0.0200 0.0084401638 1.244657 GAAUUG,GUACAU,UAAUGU,UACAUC,UGUAAA,UGUACA,UGUCCA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TRA2B 9 7329 0.0250 0.0106226650 1.234782 AAAGAA,AAGAAC,AAGAAG,AGAAGA,AGAAGG,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
TRA2A 8 6871 0.0225 0.0099589296 1.175862 AAAGAA,AAGAAA,AAGAAG,AGAAGA,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM4 3 3065 0.0100 0.0044432593 1.170310 CGCGGU,CUUCCU,GCGCGG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ZCRB1 1 1605 0.0050 0.0023274215 1.103196 GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF5 10 8869 0.0275 0.0128544391 1.097165 AAGAAG,AGAAGA,CACAUC,CGCAUC,GAAGAA,GGAAGA,UAAAGG,UACAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
A1CF 1 1642 0.0050 0.0023810421 1.070335 AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP1 16 14282 0.0425 0.0206989801 1.037903 ACACGC,ACCCAC,ACCCCC,ACGCAC,CACCGG,CACGCA,CCACCC,CCACCG,CCAUCG,CCCACC,CCCAUC,CCCCCA,CCCCUA,UACGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
SRSF6 25 21880 0.0650 0.0317100317 1.035500 AACCUG,AAGAAG,ACCGGG,ACCUGG,AGAAGA,AUCAAC,CAACCU,CAGCAC,CCUCAC,CCUGGC,CUCACG,CUCUGG,GAAGAA,GCACCU,GGAAGA,UCAACC,UCAUCC,UCUCUC,UCUCUG AACCUG,AAGAAG,ACCGGG,ACCGUC,ACCUGG,AGAAGA,AGCACC,AGCGGA,AGGAAG,AUCAAC,AUCCUG,AUCGUA,CAACCU,CACACG,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CAUCCU,CCACAC,CCACAG,CCACUC,CCACUG,CCCGGC,CCUCAC,CCUCAG,CCUCUC,CCUCUG,CCUGGC,CGCGUC,CUACAC,CUACAG,CUACUC,CUACUG,CUCACG,CUCAGG,CUCAUC,CUCUCG,CUCUGG,CUUCAC,CUUCAG,CUUCUC,CUUCUG,GAAGAA,GACGUC,GAGGAA,GAUCAA,GCACCU,GCAGCA,GCCGGA,GCCGUC,GCUCAU,GGAAGA,UACACG,UACAGG,UACGUC,UACUCG,UACUGG,UCAACC,UCACAC,UCACAG,UCACUC,UCACUG,UCAUCC,UCCGGA,UCCUGG,UCUCAC,UCUCAG,UCUCUC,UCUCUG,UGCGGA,UGCGGC,UGCGUA,UGCGUC,UGCGUG,UGUGGA,UUACAC,UUACAG,UUACUC,UUACUG,UUCACG,UUCAGG,UUCUCG,UUCUGG,UUUCAC,UUUCAG,UUUCUC,UUUCUG
HNRNPA2B1 9 8607 0.0250 0.0124747476 1.002917 AAGAAG,AGGGGC,CAAGAA,CCAAGA,GAAGCC,GCCAAG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PCBP2 1 26 0.09090909 0.001768405 5.683904 CCCUUA AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,AUUAAA,CCAUUC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CUCCCU,CUUCCA,UAACCC,UUAGAG,UUAGGA,UUAGGG
PCBP1 1 35 0.09090909 0.002357873 5.268867 CCCUUA AAAAAA,AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,ACCCUC,AUUAAA,CAAACC,CAUACC,CCAACC,CCACCC,CCAUAC,CCAUUC,CCCACC,CCCCAC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,UUAGAG,UUAGGA,UUAGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM14 1 53 0.004761905 0.0002720677 4.129501 CGCGCC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBM8A 1 84 0.004761905 0.0004282547 3.474998 CGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PPRC1 2 127 0.007142857 0.0006449012 3.469351 CGCGCC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAACUA,GAGACG,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
AGO1 1 283 0.004761905 0.0014308746 1.734641 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
MBNL1 21 3258 0.052380952 0.0164197904 1.673607 CCUGCU,CGCUUU,CUCGCU,CUGCCC,CUGCUC,CUGCUG,CUUGCU,GCGCUU,GCUGCU,GCUUUU,UCGCUA,UCUCGC,UCUGCU,UGCUGC,UGCUGU,UUGCCA,UUGCUC,UUGCUG ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUCAGU,GAUCAG,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
LIN28A 5 900 0.014285714 0.0045395002 1.653968 GGAGGG,UGGAGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GACUGC,GCCUGC,GGCUAC,GGGUGC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,UAUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 AGUGUG,GAGUGU,GUGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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