ENSG00000138802:+:4:109462900:109473186

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000138802:+:4:109462900:109473186 ENSG00000138802 ENST00000504968 + 4 109462901 109473186 927 GUCCAGCCCAGAAUCAAAUGCAGGUUCCAUCUGGAUAUGGAUUGCAUCAUCAAAACUAUAUUGCUCCCUCAGGACAUUACUCUCAAGGACCUGGGAAAAUGACCUCAUUGCCAUUGGAUACCCAGUGUGGUGAUUACUACUCUGCUCUCUAUACAGUACCAACACAAAAUGUGACUCCUAACACAGUGAACCAGCAACCAGGAGCACAGCAGUUGUACAGCAGGGGUCCUCCUGCCCCUCAUAUUGUGGGAUCCACUCUAGGAUCUUUCCAAGGUGCUGCAUCGUCAGCAUCCCAUUUGCAUACGAGUGCCUCCCAACCAUACUCCUCUUUUGUGAAUCACUACAAUAGUCCAGCCAUGUACUCUGCCAGCUCUUCUGUUGCGUCUCAGGGAUUUCCCUCUACUUGUGGUCAUUAUGCUAUGUCAACUGUUUCUAAUGCCGCGUAUCCUAGUGUUUCAUAUCCCUCUCUGCCUGCUGGUGAUACAUAUGGGCAAAUGUUUACCUCACAGAAUGCUCCGACUGUUAGGCCAGUUAAAGAUAAUUCAUUCUCUGGUCAAAAUACAGCUAUCAGCCAUCCAUCGCCACUUCCACCUCUACCAUCACAACAGCACCACCAGCAGCAAAGUCUUUCAGGAUACAGUACUCUAACGUGGUCAUCUCCAGGCCUUCCAUCGACUCAAGACAAUCUCAUCCGAAACCACACAGGAUCCCUGGCUGUAGCGAACAACAACCCAACCAUUACUGUUGCAGAUUCUUUAUCCUGUCCUGUUAUGCAAAAUGUUCAGCCUCCCAAGUCCAGCCCAGUGGUAUCCACUGUUUUAUCAGGAUCCUCAGGAUCCUCAUCAACAAGAACACCUCCCACUGCAAAUCACCCAGUUGAGCCUGUGACCUCAGUUACACAGCCAUCAGAGCUAUUACAACAAAAAGGUCCAGCCCAGAAUCAAAUGCAGGUUCCAUCUGGAUAUGGAUUGCAUCAU circ
ENSG00000138802:+:4:109462900:109473186 ENSG00000138802 ENST00000504968 + 4 109462901 109473186 22 ACAACAAAAAGGUCCAGCCCAG bsj
ENSG00000138802:+:4:109462900:109473186 ENSG00000138802 ENST00000504968 + 4 109462701 109462910 210 AGGGUGUGAAUAACAGGAGGUGGGGAUCAUUGGGGGCCAUGUUGGAGGCAGGCUACCAUAAUGGGUCUAUAACAGUGUAUACCUUUUGUAAUAAGUUGGGAUUAUGGAAAAGAAAGUUAAUUGCUUCAAUAUUUAAAUGGGGGCUAUUUUUAAAAAUUAGUUAUCUCUUUACAAAUACCUGUAAAUACUUGCUUUUUCAGGUCCAGCCCA ie_up
ENSG00000138802:+:4:109462900:109473186 ENSG00000138802 ENST00000504968 + 4 109473177 109473386 210 CAACAAAAAGGUAUUUGAGAUAUUUAUUAUUGUAUAUGCACACAGACACACAUACGUAUUUAUAGAAGAUAUGAAAAAAAGUUACUUAUAAUCUCAAUCCAAACACAACUUUUGGAAUAUUAACUUACAGUGUCUCAUAUAUGUUUUACAUAAUUACAUACCAUUUUGUAUUUUGCUUUUCUUUUUAUUACACAUAGUUCUUCAUAUAUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.002157497 0.0002275250 3.245262 AGGGAU AGGGAU
PTBP2 2 267 0.003236246 0.0003883867 3.058756 CUCUCU CUCUCU
RBMY1A1 2 489 0.003236246 0.0007101099 2.188207 ACAAGA,CAAGAC ACAAGA,CAAGAC
YBX2 5 1480 0.006472492 0.0021462711 1.592489 AACAAC,ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SNRPB2 3 991 0.004314995 0.0014376103 1.585686 AUUGCA,UAUUGC,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
SRP14 2 847 0.003236246 0.0012289250 1.396924 CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
QKI 8 2805 0.009708738 0.0040664663 1.255508 CUAACA,CUAACG,CUACUC,CUCAUA,UCAUAU,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SSB 3 1260 0.004314995 0.0018274462 1.239530 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ERI1 1 632 0.002157497 0.0009173461 1.233821 UUUCAG UUCAGA,UUUCAG
ENOX1 9 3195 0.010787487 0.0046316558 1.219759 AAGACA,AAUACA,AGGACA,AUACAG,GUACAG,UAUACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ACO1 3 1283 0.004314995 0.0018607779 1.213453 CAGUGA,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
YBX1 21 7119 0.023732470 0.0103183321 1.201652 AACCAC,ACCACA,ACCACC,AUCAUC,CAACCA,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAC,CCACCA,CCAGCA,GCCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
TUT1 1 678 0.002157497 0.0009840095 1.132615 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM6 2 1054 0.003236246 0.0015289102 1.081818 CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZRANB2 1 45 0.09090909 0.003012837 4.915230 AAAGGU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
ZFP36 1 126 0.09090909 0.008318051 3.450107 AAAAGG AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF1 1 625 0.09090909 0.041000786 1.148773 GGUCCA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 3 221 0.009523810 0.0011185006 3.089973 AUAUAU,UAUAUA AUAUAU,UAUAUA
TUT1 3 230 0.009523810 0.0011638452 3.032640 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AGAUAU AAUUUA,AGAUAU,AGUAGG
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PUM2 9 764 0.023809524 0.0038542926 2.627001 GUAAAU,GUAUAU,UAAAUA,UACAUA,UAUAUA,UGUAAA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AUAUAU,CAUAUA,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM41 5 502 0.014285714 0.0025342604 2.494937 AUACUU,UACUUG,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PABPC4 4 462 0.011904762 0.0023327287 2.351448 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPLL 7 748 0.019047619 0.0037736800 2.335567 ACACAC,ACAUAC,CAAACA,CACACA,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ZFP36L2 7 774 0.019047619 0.0039046755 2.286336 AUUUAU,UAUUUA,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPL 13 1419 0.033333333 0.0071543732 2.220068 AAACAC,AAAUAC,AACAAA,AACACA,ACACAA,ACACAC,ACAUAA,ACAUAC,CACAAC,CACACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 CCUGUA CCUGUA,CGCCUG,CUGUAG,GCCUGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
IGHMBP2 2 350 0.007142857 0.0017684401 2.014024 AAAAAA AAAAAA
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,UAAUUA,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGF2BP3 10 1348 0.026190476 0.0067966546 1.946146 AAACAC,AAAUAC,AACACA,ACACAC,ACAUAC,CAAACA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPD 11 1488 0.028571429 0.0075020153 1.929223 AAAAAA,AGAUAU,AUUUAU,UAUUUA,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PUM1 16 2172 0.040476190 0.0109482064 1.886379 AAUAUU,ACAUAA,AUUGUA,GUAAAU,GUAAUA,GUAUAU,GUCCAG,UAAAUA,UACAUA,UAUAUA,UGUAAA,UGUAAU,UGUAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
QKI 6 904 0.016666667 0.0045596534 1.869970 ACACAC,ACUUAU,AUUAAC,CUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ELAVL4 18 2916 0.045238095 0.0146966949 1.622046 AAAAAA,AUUUAU,UAUUUA,UAUUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
IGF2BP2 12 2163 0.030952381 0.0109028617 1.505344 AAACAC,AAAUAC,AACACA,ACACAC,ACAUAC,CAAACA,CACACA,CCAAAC,GCACAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAA,ACAAAU,CAAACA,CAAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGAGG,AGGUGG,AGUUGG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,UAUUUA,UAUUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SART3 3 777 0.009523810 0.0039197904 1.280762 AAAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PPIE 46 9262 0.111904762 0.0466696896 1.261714 AAAAAA,AAAAAU,AAAAUU,AAAUUA,AAUAUU,AUAAUU,AUAUAU,AUAUUA,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAUA,UAAUAA,UAAUUA,UAUAAU,UAUAUA,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUU,UUAUAA,UUAUUA,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SRSF5 7 1578 0.019047619 0.0079554615 1.259593 AGAAGA,CACAGA,CACAUA,UACAUA,UACGUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ELAVL2 45 9826 0.109523810 0.0495112858 1.145415 AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUUU,GUUUUA,UAAGUU,UAGUUA,UAUAUA,UAUGUU,UAUUAU,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCUUUU,UGUAUU,UUAAUU,UUACUU,UUAGUU,UUAUUG,UUCUUU,UUGUAU,UUUAUA,UUUAUU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AAGAAA,AGAAAG,AGAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUG,AUUUUU,CUUUUC,CUUUUG,CUUUUU,GUUUUA,UAUUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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