ENSG00000204764:+:5:170892386:171170203

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000204764:+:5:170892386:171170203 ENSG00000204764 ENST00000389118 + 5 170892387 171170203 1646 GAAACUACAUUCUGAAUUACGUGGCAUCACAGCCCAAGCUGGCUCCCUUUGUCAUCCAAGCUCUUAUUCAAGUCAUUGCUAAAAUCACUAAGUUGGGGUGGUUUGAGGUUCAGAAAGACCAAUUUGUCUUCAGAGAAAUUAUUGCUGAUGUGAAGAAGUUUCUCCAGGGUACUGUGGAACACUGCAUAAUAGGAGUAAUAAUCCUUUCUGAAUUGACUCAGGAAAUGAACCUGGUUGAUUAUUCUAGACCUUCAGCAAAACACAGGAAAAUAGCUACCUCAUUUCGUGAUACUUCUCUCAAAGACGUUUUAGUGCUAGCAUGCUCUCUUUUAAAAGAGGUGUUUGCCAAACCUUUAAAUCUUCAGGAUCAAUGUCAGCAAAAUCUGGUAAUGCAGGUCUUGAAACUGGUCCUUAACUGCCUUAACUUUGACUUCAUUGGCAGUUCAGCAGAUGAAUCUGCAGAUGAUCUUUGCACGGUGCAGAUUCCAACAACUUGGAGAACAAUUUUCCUGGAACCAGAAACAUUGGAUCUUUUCUUCAAUUUGUAUCAUUCACUUCCACCACUACUAUCUCAGUUAGCACUUUCAUGUUUAGUUCAGUUUGCUUCGACAAGAAGGUCCUUAUUUAACAGUCCUGAACGUGCCAAGUACCUUGGUAAUUUAAUUAAGGGAGUAAAAAGGAUACUUGAAAACCCUCAGGGUUUGUCUGAUCCAGGUAAUUAUCAUGAAUUUUGUCGAUUUUUGGCUCGUUUAAAGACAAAUUAUCAGCUGGGAGAAUUAGUUAUGGUGAAGGAAUAUCCUGAAGUUAUUAGAUUGAUUGCUAAUUUUACCAUUACUAGCCUACAGCACUGGGAAUUUGCUCCUAACAGUGUUCAUUAUUUAUUAACUCUGUGGCAAAGGAUGGUAGCAUCUGUUCCUUUUGUGAAAUCAACUGAACCCCACCUAUUAGACACUUAUGCACCAGAAAUCACGAAGGCCUUUAUCACUUCUCGGUUGGACUCUGUUGCCAUAGUUGUGAGAGAUCACUUAGAUGAUCCACUGGAUGAUACUGCCACUGUGUUUCAGCAGUUGGAGCAGUUGUGCACGGUCAGCAGAUGUGAAUAUGAAAAGACAUGUGCUCUUCUUGUGCAGUUAUUCGACCAAAAUGCACAGAAUUACCAAAAACUUCUGCAUCCAUAUUCUGGUGUAACUGUGGACAUCACCAUUCAGGAAGGACGUCUUGCAUGGCUGGUAUACUUAGUUGGGACAGUUGUAGGAGGAAGAUUAACAUAUACCAGUACAGAUGAGCAUGAUGCUAUGGAUGGAGAAUUAUCCUGUCGAGUUUUUCAGCUUAUAUCUUUAAUGGAUACCGGAUUGCCUCGAUGUUGUAAUGAGAAAAUAGAGCUUGCAAUUCUGUGGUUCUUGGAUCAGUUUCGUAAAACAUAUGUUGGUGAUCAACUUCAAAGAACCUCAAAGAAGACAGACAUCUUCCUGUGAAGGGCUUGUGGCAAACCUAUCCAACUCGGGUUUCUUCUUCCUUGAGAACGAUCUGAUUCAUCAUCAUCUGAACCAGGGAUCACAGUCUAAGGUCCAGGUAUAUGCUCGUAUGUCAGAAGUCUUAGGAAUAACAGAUGACAACCACGUUCUAGAGACGUUCAUGACAAAAAUGAAACUACAUUCUGAAUUACGUGGCAUCACAGCCCAAGCUGGCUCCCUUU circ
ENSG00000204764:+:5:170892386:171170203 ENSG00000204764 ENST00000389118 + 5 170892387 171170203 22 AUGACAAAAAUGAAACUACAUU bsj
ENSG00000204764:+:5:170892386:171170203 ENSG00000204764 ENST00000389118 + 5 170892187 170892396 210 UUGUUACAUAGGUAUACAUGUGCCAUGGUGUUUUGCUGUACCUAUCAACCCGUCAUCUAGGUUUUAAGCCCUGCAUGCAUUAGGUAUUUGUCCUAAUGCUCUCCCUCCCCUUCCCCCACCCCCACCUCUCUUUCUUCAUAUGAUUCACACUAUGUUGUUUCUGAAAAGUCCAGAUGACCCAUGGAGUGUUUUCUUUGUAGGAAACUACAU ie_up
ENSG00000204764:+:5:170892386:171170203 ENSG00000204764 ENST00000389118 + 5 171170194 171170403 210 UGACAAAAAUGUGAGUUCUUGUUUUGGUCUUUAAUUUUUCUUUUGUUGUUGUUUUAAAUGUAAUAGAUCUUUUUAUUGUAUUUAAACCUUUUUAUAUAUUAAUUUUUAAAUAAAAGACUUAAAAUUAUGCUUUGUUAGAAUGUUAGCAUUGUUCUUAAUUGAAACUUAAUUUCACAUAUUGAAAAGUCACCAUCCAAAGGACAUUGUAAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001215067 0.0001130379 3.426157 GCAUAA GCAUAA
ANKHD1 4 339 0.003037667 0.0004927293 2.624096 AGACGU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ESRP1 1 156 0.001215067 0.0002275250 2.416939 AGGGAU AGGGAU
ERI1 4 632 0.003037667 0.0009173461 1.727426 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPAB 13 1782 0.008505468 0.0025839306 1.718823 AAAGAC,AAGACA,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PTBP2 1 267 0.001215067 0.0003883867 1.645470 CUCUCU CUCUCU
RBM42 2 407 0.001822600 0.0005912752 1.624096 AACUAC,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 2 411 0.001822600 0.0005970720 1.610021 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
NXF1 1 286 0.001215067 0.0004159215 1.546652 AACCUG AACCUG
RBM6 6 1054 0.004252734 0.0015289102 1.475887 AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CNOT4 1 314 0.001215067 0.0004564992 1.412351 GACAGA GACAGA
ZCRB1 9 1605 0.006075334 0.0023274215 1.384231 AAUUAA,AUUUAA,GAAUUA,GAUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TUT1 3 678 0.002430134 0.0009840095 1.304292 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 3 688 0.002430134 0.0009985015 1.283199 AAGAAG AAGAAG
RBFOX1 5 1077 0.003645200 0.0015622419 1.222380 AGCAUG,GCAUGA,GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ZFP36L2 6 1277 0.004252734 0.0018520827 1.199242 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
EIF4B 5 1179 0.003645200 0.0017100607 1.091951 CUUGGA,GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
MSI1 13 2770 0.008505468 0.0040157442 1.082723 AGGAAG,AGGAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGUUA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PABPC3 5 1234 0.003645200 0.0017897669 1.026226 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 5 1237 0.003645200 0.0017941145 1.022726 AAUCAA,AUUCAA,GAUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM46 2 14 0.13636364 0.0009824469 7.116864 AAUGAA,AUGAAA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
SRSF9 1 134 0.09090909 0.0088420225 3.361976 AUGAAA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ZNF638 9 646 0.023809524 0.0032597743 2.868695 GUUCUU,GUUGUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
SSB 5 505 0.014285714 0.0025493753 2.486358 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 ACCCGU AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
A1CF 5 598 0.014285714 0.0030179363 2.242939 UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAACUA,AAGACU,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
CELF2 7 881 0.019047619 0.0044437727 2.099754 GUUGUU,UAUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CSTF2 8 1022 0.021428571 0.0051541717 2.055723 GUGUUU,GUUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 8 1034 0.021428571 0.0052146312 2.038899 GAAUGU,GUUGUU,GUUUUG,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 AAAGAC,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM41 3 502 0.009523810 0.0025342604 1.909974 AUACAU,UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 ACUUAA,AUUUAA,GACUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PUM1 12 2172 0.030952381 0.0109482064 1.499356 AAUGUU,AUUGUA,GUAAUA,GUCCAG,UAAAUA,UACAUA,UAUAUA,UGUAAU,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 3 764 0.009523810 0.0038542926 1.305073 UAAAUA,UACAUA,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ELAVL2 50 9826 0.121428571 0.0495112858 1.294279 AAUUUU,AUUUAA,AUUUUU,CUUUAA,CUUUCU,CUUUUU,GUUUUA,GUUUUC,UAAUUU,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UCUUUU,UGUAUU,UUAAUU,UUAUAU,UUAUUG,UUCUUU,UUGUAU,UUUAAG,UUUAAU,UUUAUA,UUUAUU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF4 3 776 0.009523810 0.0039147521 1.282618 GGUGUU,GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PPIE 46 9262 0.111904762 0.0466696896 1.261714 AAAAAU,AAAAUU,AAAUAA,AAAUUA,AAUAAA,AAUUAU,AAUUUU,AUAAAA,AUAUAU,AUAUUA,AUUAAU,AUUUAA,AUUUUU,UAAAAU,UAAAUA,UAAUUU,UAUAUA,UAUAUU,UAUUAA,UAUUUA,UUAAAA,UUAAAU,UUAAUU,UUAUAU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,UUUUUA,UUUUUC AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACUA,CACACU,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TIAL1 23 5597 0.057142857 0.0282043531 1.018655 AAUUUU,AUUUUU,CUUUUG,CUUUUU,GUUUUC,UUAAAU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUU,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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