ENSG00000181163:+:5:171391304:171400210

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000181163:+:5:171391304:171400210 ENSG00000181163 ENST00000676625 + 5 171391305 171400210 444 GUCAGUUUAGGGGCUGGUGCAAAGGAUGAGUUGCACAUUGUUGAAGCAGAGGCAAUGAAUUACGAAGGCAGUCCAAUUAAAGUAACACUGGCAACUUUGAAAAUGUCUGUACAGCCAACGGUUUCCCUUGGGGGCUUUGAAAUAACACCACCAGUGGUCUUAAGGUUGAAGUGUGGUUCAGGGCCAGUGCAUAUUAGUGGACAGCACUUAGUAGCUGUGGAGGAAGAUGCAGAGUCAGAAGAUGAAGAGGAGGAGGAUGUGAAACUCUUAAGUAUAUCUGGAAAGCGGUCUGCCCCUGGAGGUGGUAGCAAGGUUCCACAGAAAAAAGUAAAACUUGCUGCUGAUGAAGAUGAUGACGAUGAUGAUGAAGAGGAUGAUGAUGAAGAUGAUGAUGAUGAUGAUUUUGAUGAUGAGGAAGCUGAAGAAAAAGCGCCAGUGAAGAAAGUCAGUUUAGGGGCUGGUGCAAAGGAUGAGUUGCACAUUGUUGAAGCAGA circ
ENSG00000181163:+:5:171391304:171400210 ENSG00000181163 ENST00000676625 + 5 171391305 171400210 22 CAGUGAAGAAAGUCAGUUUAGG bsj
ENSG00000181163:+:5:171391304:171400210 ENSG00000181163 ENST00000676625 + 5 171391105 171391314 210 AGGUGUGUGUAGUAGGCUAUACCAUCUAGGUUUGUAUAAGCACAUUCUUAUGAUUGUACAAAGAUGAAAUUGUCUAACAACACAUUUCUCAGAACCUAGCCCUGUGGUUAAGUGACGCAUGGCUGCAUAUAACAUUUAGUGGGGGGGUGUAAAAUAGGUGGAACUCAAAAGUUGAAGUAGUAUUUUUUUUUUGUUCACAGGUCAGUUUAG ie_up
ENSG00000181163:+:5:171391304:171400210 ENSG00000181163 ENST00000676625 + 5 171400201 171400410 210 AGUGAAGAAAGUGAGUAGAUACAAUGCUACAAGGUUGUUAAACUAACAAUAGAAAUGGUGAUUUUUUAGUGCUAUUUGCUUGUUUUGUAGUUAAGGGAAGCUGGUGUGGGAGAUCAUCUCAUACUGAAAAUUAGUCCUGAGGAGGAUUACAGAAAACUUAAGAGUGGGGAAUGGUCUGUUUUCUUUAUCCAUGUGGCCCUCCACCCAGUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM46 32 4554 0.074324324 0.0066011240 3.493051 AAUGAA,AUGAAG,AUGAAU,AUGAUG,AUGAUU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPA1L2 1 314 0.004504505 0.0004564992 3.302684 UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ANKHD1 1 339 0.004504505 0.0004927293 3.192501 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
FXR1 1 411 0.004504505 0.0005970720 2.915392 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
G3BP2 5 1644 0.013513514 0.0023839405 2.502983 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
NONO 4 1498 0.011261261 0.0021723567 2.374035 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC4 3 1251 0.009009009 0.0018144033 2.311873 AAAAAA,AAAAAG AAAAAA,AAAAAG
ACO1 3 1283 0.009009009 0.0018607779 2.275463 CAGUGA,CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
MSI1 6 2770 0.015765766 0.0040157442 1.973056 AGGAAG,AGGAGG,AGGUGG,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PABPC5 5 2400 0.013513514 0.0034795387 1.957435 AGAAAA,AGAAAG,GAAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2A 16 6871 0.038288288 0.0099589296 1.942841 AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
IGHMBP2 1 813 0.004504505 0.0011796520 1.933007 AAAAAA AAAAAA
SRSF4 8 3740 0.020270270 0.0054214720 1.902609 AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SART3 5 2634 0.013513514 0.0038186524 1.823267 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ZCRB1 2 1605 0.006756757 0.0023274215 1.537598 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
DAZAP1 10 5964 0.024774775 0.0086445016 1.519017 AAAAAA,AGGAAG,AGGAUG,AGGUUG,AGUAAA,AGUAUA,AGUUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
AGO2 2 1830 0.006756757 0.0026534924 1.348438 AAAAAA,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPN1 1 1222 0.004504505 0.0017723764 1.345683 AGAAGA AAAAGA,AGAAGA
RBMX 7 4925 0.018018018 0.0071387787 1.335691 AAGUAA,AAGUGU,AGGAAG,AGUAAC,GUAACA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PUM2 2 1890 0.006756757 0.0027404447 1.301921 GUAUAU,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ENOX1 4 3195 0.011261261 0.0046316558 1.281768 GGACAG,GUACAG,UGGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBMS3 1 1283 0.004504505 0.0018607779 1.275463 UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SRSF5 12 8869 0.029279279 0.0128544391 1.187613 AGAAGA,AGGAAG,CACAGA,GAAGAA,GAGGAA,GGAAGA,UACAGC,UGCAGA,UGCAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
CELF5 1 1415 0.004504505 0.0020520728 1.134287 GUGUGG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM3 2 2152 0.006756757 0.0031201361 1.114722 AAAACU,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
LIN28A 5 4315 0.013513514 0.0062547643 1.111375 GGAGGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
PABPC1 5 4443 0.013513514 0.0064402624 1.069211 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SFPQ 30 24050 0.069819820 0.0348548043 1.002279 AAGAGG,AGAGGA,CUGGAG,GAAGAA,GAAGAG,GAAGCA,GAGGAA,GGAAGA,GGAGGA,GGUCUG,GUGGUU,UAGGGG,UAGUGG,UCUGGA,UGAAGC,UGAUUU,UGGAGG,UGGUCU,UUAGUG,UUGAAG,UUGAUG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC5 2 18 0.13636364 0.001244433 6.775827 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2A 1 54 0.09090909 0.003602305 4.657432 AGAAAG AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZFP36 1 126 0.09090909 0.008318051 3.450107 AGAAAG AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM28 7 340 0.019047619 0.0017180572 3.470761 AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 GGGGGG AAGGAA,GAAGGA,GGGGGG
PABPC5 6 596 0.016666667 0.0030078597 2.470156 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAAC,ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBM6 1 191 0.004761905 0.0009673519 2.299426 UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CPEB4 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
DDX19B 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
EIF4A3 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
CELF4 6 776 0.016666667 0.0039147521 2.089973 GGUGUG,GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPU 8 1136 0.021428571 0.0057285369 1.903297 GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM24 6 888 0.016666667 0.0044790407 1.895704 AGAGUG,GAGUGG,GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PUM2 5 764 0.014285714 0.0038542926 1.890035 GUAGAU,UAGAUA,UGUAAA,UGUACA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
TARDBP 7 1034 0.019047619 0.0052146312 1.868974 GAAUGG,GUGUGU,GUUGUU,GUUUUG,UGUGUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
NOVA2 10 1434 0.026190476 0.0072299476 1.856985 AGAUCA,AUCAUC,GGGGGG,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
CELF5 4 669 0.011904762 0.0033756550 1.818299 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MSI1 6 961 0.016666667 0.0048468360 1.781850 AGGAGG,AGGUGG,AGUAGG,UAGGUG,UAGUAG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPCL1 9 1381 0.023809524 0.0069629182 1.773775 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
FUS 11 1711 0.028571429 0.0086255542 1.727884 GGGGGG,GGGUGU,UGGUGA,UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 AUCAUC,GGGGGG,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUGUGU,GUUUUG,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ESRP2 4 731 0.011904762 0.0036880290 1.690617 GGGAAG,GGGAAU,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CELF2 5 881 0.014285714 0.0044437727 1.684716 GUCUGU,GUGUGU,GUUGUU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SYNCRIP 6 1041 0.016666667 0.0052498992 1.666604 UUUUUU AAAAAA,UUUUUU
KHDRBS2 6 1051 0.016666667 0.0053002821 1.652825 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPC 12 2006 0.030952381 0.0101118501 1.614003 AUUUUU,GGGGGG,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
CELF6 6 1196 0.016666667 0.0060308343 1.466536 GUGGGG,GUGUGG,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
DAZAP1 15 2878 0.038095238 0.0145052398 1.393037 AGGUUG,AGUAGG,AGUUAA,AGUUUA,GGGGGG,UAGGUU,UAGUAU,UAGUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUAAC,CUAACA,CUCAUA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SF1 6 1294 0.016666667 0.0065245869 1.353007 ACUAAC,CUAACA,UAACAA,UACUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 UAUUUU,UGAUUU,UGUUUU,UUGUUU,UUUAGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPH3 11 2496 0.028571429 0.0125806127 1.183371 AAGGGA,AGGGAA,AUGUGG,GGAAUG,GGAGGA,GGGAAG,GGGAAU,GGGGGG,GGGUGU,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGU,GUUGUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AAUUGU,AUUGUA,GUAGAU,UAGAUA,UGUAAA,UGUACA,UGUAUA,UUGUAC,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AUGAAA,AUGAUU,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUGU,GUUUGU,UGUGUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 ACUAAC,AGAAAA,CUAACA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 ACUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPH2 13 3198 0.033333333 0.0161174929 1.048338 AAGGGA,AGGGAA,AUGUGG,GGAAUG,GGAGGA,GGGAAG,GGGAAU,GGGGAA,GGGGGG,GGGUGU,UGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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