ENSG00000271793:-:6:85663673:85666147

1. Sequences

Rows: 4

Columns:

• Select all:
• id
• gene
• transcript
• strand
• chrom
• startGR
• endGR
• length
• seq
• type

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id	gene	transcript	strand	chrom	startGR	endGR	length	seq	type
ENSG00000271793:-:6:85663673:85666147	ENSG00000271793	ENST00000682106	-	6	85663674	85666147	197	UUAGUUGAAUCCAUGGACAUGAAACCCACAGAUAUAGAGGGUUGGCCCGGUGCAGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCCAAGGCGGGUGGAUCACCUGAGGUCAGAAGCUUGAGACCAGCCUGGCCAACAUGGGUACUGCUUUCUCUUGCUGCAGCUUGCUUCCUCCCUCAGGUAUGAAGUUAAGUUAGUUGAAUCCAUGGACAUGAAACCCACAGAUAUAGAGGGUUGGCCCGG	circ
ENSG00000271793:-:6:85663673:85666147	ENSG00000271793	ENST00000682106	-	6	85663674	85666147	22	AUGAAGUUAAGUUAGUUGAAUC	bsj
ENSG00000271793:-:6:85663673:85666147	ENSG00000271793	ENST00000682106	-	6	85666138	85666347	210	CUCCACUGCAGCUGCUGGGUGAUAGAGCAAGACCUGGUCUCUGGUCUCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACUAAUACAUACAAUGUAAAUGCUAUGUUGUAAAUAGUUGCUGUAUUUUUAUUUGUCAUUUCUUAUUGUUGUACUGUUAUUUUUAAUUGUUCUUUUCCUAAUAUUUUUGUUUUGCAGUUAGUUGAAU	ie_up
ENSG00000271793:-:6:85663673:85666147	ENSG00000271793	ENST00000682106	-	6	85663474	85663683	210	UGAAGUUAAGGUUAGUAUCUUCCUUGCUCCGUACUGCCACUUUUUUUUUUUUUUUUUUGAGACAGAGUCUCACUCUGUCACCCAGGCUGGAGGGCAGUGUCACAAUCUCGGCUCACUGCAACGUCCGGCUCCCAGGUUCAAGCGAUUCUUAUGCCUCAGCCUCCCUAGUAGCUGGGAUUACAGAUGCAUGUCACCACACCCAGCCAAUGU	ie_down

• Note:
  • id: unique identifier.
  • gene: represents the gene from which the circRNA arises.
  • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
  • strand: is the strand from which the gene is transcribed.
  • chrom: is the chromosome from which the circRNA is derived.
  • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
  • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
  • length: length of the extracted sequences.
  • seq: sequence used in the downstream analysis.
  • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.