ENSG00000125266:-:13:106512528:106512812

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000125266:-:13:106512528:106512812 ENSG00000125266 ENST00000646441 - 13 106512529 106512812 284 AUUUCUACCUGGACAAGGACUGGUACUAUACCCACAGAUAGGAGACAAAUUGGAUAUUAUUUGCCCCAAAGUGGACUCUAAAACUGUUGGCCAGUAUGAAUAUUAUAAAGUUUAUAUGGUUGAUAAAGACCAAGCAGACAGAUGCACUAUUAAGAAGGAAAAUACCCCUCUCCUCAACUGUGCCAAACCAGACCAAGAUAUCAAAUUCACCAUCAAGUUUCAAGAAUUCAGCCCUAACCUCUGGGGUCUAGAAUUUCAGAAGAACAAAGAUUAUUACAUUAUAUAUUUCUACCUGGACAAGGACUGGUACUAUACCCACAGAUAGGAGACAAAU circ
ENSG00000125266:-:13:106512528:106512812 ENSG00000125266 ENST00000646441 - 13 106512529 106512812 22 UUACAUUAUAUAUUUCUACCUG bsj
ENSG00000125266:-:13:106512528:106512812 ENSG00000125266 ENST00000646441 - 13 106512803 106513012 210 GUCUUUCCUUUUUCUUUUAAAGCUUAAUUCCAAAAUACAUUCAUCCCAUAUUGAUCUGAAGUAAGAGACUUUUGAUAAAUUAAAGUGUGAAUCUGAAAAUGUGUAGUUUGGGAUUAUGGGCAUUGCCUGGCUAUCUUGUAACUGUCAUUAAUACUGUUAAUUUUUAUCAACUCAAUGGCUUUUUUUUCUUAUGCUUUUAGAUUUCUACCU ie_up
ENSG00000125266:-:13:106512528:106512812 ENSG00000125266 ENST00000646441 - 13 106512329 106512538 210 UACAUUAUAUGUAAGUAUAAUUUUAUUCAUUUAUUUUAUAGAAAUUAAGAUAAGCUAUAUAGGUUUGUAUCAAUUUUUUGUUUCCUUAAAAUUAUUGUGACAAAUAAUUUGAUGAAAAUCUAUGUGGAAAAAUUGUCCCCCCCCCCUUUUUUUUUUUCAAAGAAAACUUCAUUGAAUUUGGGACCCUGUGCUACCAGUAUUCAUUAAGUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 2 426 0.010563380 0.0006188101 4.093431 AUAUAU,UAUAUA AUAUAU,UAUAUA
CNOT4 1 314 0.007042254 0.0004564992 3.947353 GACAGA GACAGA
ERI1 2 632 0.010563380 0.0009173461 3.525462 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPA0 1 453 0.007042254 0.0006579386 3.420012 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 1 497 0.007042254 0.0007217036 3.286559 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPAB 5 1782 0.021126761 0.0025839306 3.031432 AAAGAC,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPM 2 999 0.010563380 0.0014492040 2.865739 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TUT1 1 678 0.007042254 0.0009840095 2.839293 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 1 688 0.007042254 0.0009985015 2.818201 AAGAAG AAGAAG
SNRNP70 2 1237 0.010563380 0.0017941145 2.557728 AUCAAG,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS3 2 1283 0.010563380 0.0018607779 2.505094 AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM41 2 1318 0.010563380 0.0019115000 2.466294 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
FXR2 6 3434 0.024647887 0.0049780156 2.307821 AGACAA,AGACAG,GACAAA,GACAAG,GACAGA,GGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
AGO2 2 1830 0.010563380 0.0026534924 1.993107 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPN1 1 1222 0.007042254 0.0017723764 1.990352 AGAAGA AAAAGA,AGAAGA
ZFP36L2 1 1277 0.007042254 0.0018520827 1.926889 UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
TRA2B 10 7329 0.038732394 0.0106226650 1.866395 AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGAAGG,AGGAAA,GAAGAA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
KHDRBS3 4 3429 0.017605634 0.0049707696 1.824496 AUAAAG,GAUAAA,UAAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PPIE 22 18315 0.080985915 0.0265436196 1.609306 AAAAUA,AAUAUU,AUAUAU,AUAUUA,AUAUUU,AUUAUA,AUUAUU,UAUAAA,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ENOX1 3 3195 0.014084507 0.0046316558 1.604509 AGACAG,CAGACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBMX 5 4925 0.021126761 0.0071387787 1.565322 AAGAAG,AAGGAA,AGAAGG,AUCAAA,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
A1CF 1 1642 0.007042254 0.0023810421 1.564444 CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZNF638 1 1773 0.007042254 0.0025708878 1.453771 UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
KHDRBS2 1 1858 0.007042254 0.0026940701 1.386250 GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SRSF4 3 3740 0.014084507 0.0054214720 1.377353 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
QKI 2 2805 0.010563380 0.0040664663 1.377224 CUAACC,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PUM2 1 1890 0.007042254 0.0027404447 1.361627 UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPD 2 2837 0.010563380 0.0041128408 1.360864 AGAUAU,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPA2B1 8 8607 0.031690141 0.0124747476 1.345023 AAGAAG,AAGGAA,AGAUAU,CAAGAA,CAAGGA,CCAAGA,GAAGGA,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
IGF2BP3 4 4815 0.017605634 0.0069793662 1.334869 AAAUAC,AAAUUC,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PCBP1 12 13384 0.045774648 0.0193975949 1.238671 AAACCA,AAAUUC,AAUUCA,ACAUUA,AUUCAC,CAAACC,CCAAAC,CCCCAA,CCCUCU,CCUAAC,CUAACC AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPA3 1 2140 0.007042254 0.0031027457 1.182492 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 1 2152 0.007042254 0.0031201361 1.174428 AAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PABPC1 3 4443 0.014084507 0.0064402624 1.128918 ACAAAU,CAAACC,CUAACC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM46 3 4554 0.014084507 0.0066011240 1.093325 AUCAAA,AUCAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PUM1 4 5823 0.017605634 0.0084401638 1.060694 AAUAUU,AGAAUU,UAUAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
DAZAP1 4 5964 0.017605634 0.0086445016 1.026182 AGAUAU,AGGAAA,AGUAUG,AGUUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
PABPC5 1 2400 0.007042254 0.0034795387 1.017141 GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP2 6 8408 0.024647887 0.0121863560 1.016197 AAAUAC,AAAUUC,AAUUCA,CCAAAC,GAAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 2 2 0.13636364 0.0001964894 9.438792 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 1 2 0.09090909 0.0001964894 8.853829 UAUAUA GAUAUA,UAUAUA
RBMS3 2 5 0.13636364 0.0003929788 8.438792 AUAUAU,UAUAUA AAUAUA,AUAUAU,UAUAGA,UAUAUA
PUM2 1 7 0.09090909 0.0005239717 7.438792 UAUAUA GUAAAU,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA
ELAVL2 3 28 0.18181818 0.0018993974 6.580811 AUAUUU,UAUAUA,UAUAUU AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUUG,CUUUCU,GAUUUU,GUAUUG,GUUUUU,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UGUAUU,UUAAGU,UUACUU,UUAGUU,UUAUUG,UUUACU,UUUAGU,UUUCUU,UUUUAG
PUM1 1 16 0.09090909 0.0011134399 6.351329 UAUAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAUAA,CAGAAU,GUAAAU,GUCCAG,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA,UUAAUG
KHSRP 2 35 0.13636364 0.0023578727 5.853829 AUAUUU,UAUAUU ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
PPIE 4 61 0.22727273 0.0040607807 5.806524 AUAUAU,AUAUUU,UAUAUA,UAUAUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUUAA,UAAAAA,UAAAUA,UAAAUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAAU,UUAUUA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NOVA1 23 1428 0.057142857 0.007199718 2.988561 AUCAAC,AUUCAU,CAUUCA,CCCCCC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
CPEB4 10 691 0.026190476 0.003486497 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.003486497 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.003486497 2.909192 UUUUUU UUUUUU
HNRNPU 15 1136 0.038095238 0.005728537 2.733372 CCCCCC,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBMS1 2 217 0.007142857 0.001098347 2.701167 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RALY 14 1117 0.035714286 0.005632809 2.664575 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
U2AF2 13 1071 0.033333333 0.005401048 2.625654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
TUT1 2 230 0.007142857 0.001163845 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPCL1 16 1381 0.040476190 0.006962918 2.539310 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 17 1487 0.042857143 0.007496977 2.515155 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
A1CF 6 598 0.016666667 0.003017936 2.465331 AGUAUA,AUAAUU,CAGUAU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
KHDRBS2 11 1051 0.028571429 0.005300282 2.430432 GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SYNCRIP 10 1041 0.026190476 0.005249899 2.318681 UUUUUU AAAAAA,UUUUUU
HNRNPC 20 2006 0.050000000 0.010111850 2.305881 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PABPC5 5 596 0.014285714 0.003007860 2.247764 AGAAAA,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ELAVL3 17 1928 0.042857143 0.009718863 2.140676 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
MATR3 1 216 0.004761905 0.001093309 2.122837 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
KHDRBS3 14 1646 0.035714286 0.008298065 2.105654 AAAUAA,AGAUAA,AUUAAA,GAUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
AKAP1 1 221 0.004761905 0.001118501 2.089973 UAUAUA AUAUAU,UAUAUA
RBMS3 4 562 0.011904762 0.002836558 2.069326 AUAUAG,CUAUAU,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM28 2 340 0.007142857 0.001718057 2.055723 GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 2 351 0.007142857 0.001773478 2.009919 CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NOVA2 11 1434 0.028571429 0.007229948 1.982516 AUCAAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RBM41 3 502 0.009523810 0.002534260 1.909974 AUACAU,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL4 22 2916 0.054761905 0.014696695 1.897681 AUUUAU,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL1 24 3309 0.059523810 0.016676743 1.835629 AUUUAU,CCCCCC,UAGUUU,UAUUUU,UUAUUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZCRB1 4 666 0.011904762 0.003360540 1.824774 AAUUAA,GCUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 3 541 0.009523810 0.002730754 1.802240 AAAACU,AAUACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PCBP2 29 4164 0.071428571 0.020984482 1.767178 AAAUUA,AAUUAA,AAUUCC,ACAUUA,AUUAAA,AUUCCA,CAUUAA,CCCCCC,CCCCCU,CCUUAA,CUUAAA,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
KHDRBS1 13 1945 0.033333333 0.009804514 1.765448 CAAAAU,GAAAAC,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
TIAL1 39 5597 0.095238095 0.028204353 1.755621 AAUUUU,AUUUUA,AUUUUU,CUUUUA,CUUUUG,CUUUUU,UAAAUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 34 5140 0.083333333 0.025901854 1.685838 AUUUUU,CUUUUA,CUUUUG,CUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 64 9826 0.154761905 0.049511286 1.644221 AAUUUG,AAUUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUU,CUUUUA,CUUUUU,UAAUUU,UAUAUA,UAUUGA,UAUUGU,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UUAAGU,UUAAUU,UUAUAU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGUAU,UUUAUA,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 60 9262 0.145238095 0.046669690 1.637862 AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUA,AAUAAU,AAUUAA,AAUUAU,AAUUUU,AUAAAU,AUAAUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUUU,UAUAAU,UAUAUA,UAUUUU,UUAAAA,UUAAUA,UUAAUU,UUAUAU,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPK 20 3244 0.050000000 0.016349254 1.612703 CAUCCC,CCCCCC,CCCCCU,CCCCUU,UCCCAU,UCCCCC,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
ZFP36L2 4 774 0.011904762 0.003904676 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC3 1 310 0.004761905 0.001566909 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
FUS 10 1711 0.026190476 0.008625554 1.602353 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
PCBP1 30 4891 0.073809524 0.024647320 1.582376 AAAUUA,AAUUAA,AAUUCC,ACAUUA,AUUAAA,AUUCCA,CAUCCC,CAUUAA,CCCCCC,CCUUAA,CUUAAA,CUUUCC,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
DAZAP1 15 2878 0.038095238 0.014505240 1.393037 AGUAAG,AGUAUA,AGUUUG,UAGGUU,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
PTBP1 41 8003 0.100000000 0.040326481 1.310201 ACUUUU,AUUUUU,CCCCCC,CCUUUU,CUAUCU,CUUUCC,CUUUUU,GUCUUU,UAUUUU,UCCCCC,UCUUUC,UCUUUU,UUAUUU,UUCCUU,UUCUUU,UUUCUU,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
IGF2BP3 6 1348 0.016666667 0.006796655 1.294069 AAAAUC,AAAUAC,AACUCA,AAUACA,ACAUUC,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
SART3 3 777 0.009523810 0.003919790 1.280762 AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA1 28 6340 0.069047619 0.031947803 1.111875 AUAGAA,AUUUAU,CAAAGA,CCCCCC,GUAAGU,UAAGUA,UAGAUU,UUAGAU,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
PABPC1 5 1321 0.014285714 0.006660621 1.100845 ACAAAU,AGAAAA,CAAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
AGO2 2 677 0.007142857 0.003415961 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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