ENSG00000075151:-:1:20941490:21111383

1. Sequences

Rows: 4

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• id
• gene
• transcript
• strand
• chrom
• startGR
• endGR
• length
• seq
• type

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id	gene	transcript	strand	chrom	startGR	endGR	length	seq	type
ENSG00000075151:-:1:20941490:21111383	ENSG00000075151	MSTRG.488.20	-	1	20941491	21111383	1941	CAAUCCCACAGAGUAUUGAUGAGGAAACUGAAGUUUGGAGCGAUCACAUCAUUUUCCCAAGAAUUCCUAGAGGACCUGUGCAACAACCUCUUGAGGAUCGAAUCUUCACUCCCGCUGUCUCAGCAGUCUACAGCACGGUAACACAAGUGGCAAGACAGCCGGGAACCCCUACCCCAUCCCCUUAUUCAGCACAUGAAAUAAACAAGGGGCAUCCAAAUCUUGCGGCAACGCCCCCGGGACAUGCAUCGUCCCCUGGACUCUCUCAAACCCCUUAUCCCUCUGGACAGAAUGCAGGUCCAACCACGCUGGUAUACCCUCAAACCCCUCAGACAAUGAAUUCACAACCUCAAACCCGUUCUCCGCCCAGCAGAACAGUGCCAAUACAUUGCACAGACAACUGGAAGAGGAGGAAGGUUUUGGAACAGACUCCCGUUUACAGGUCCUUGGCUGGAAGAGGCUGGAUAAAAUACUGCAUUUUUUUCCAGAGGCCUCAAAUACAGCCUCCUAGAGCUACCAUCCCGAACAGCAGUCCUUCCAUUCGUCCUGGUGCACAGACACCCACUGCAGUGUACCAGGCUAAUCAGCACAUCAUGAUGGUUAACCAUCUGCCCAUGCCGUACCCAGUGCCCCAGGGGCCUCAGUACUGUAUACCACAGUACCGUCAUAGUGGCCCUCCUUAUGUUGGGCCCCCCCAACAAUAUCCAGUUCAACCACCGGGGCCAGGUCCUUUUUAUCCUGGACCAGGACCUGGGGACUUCCCCAAUGCUUAUGGAACGCCUUUUUACCCAAGUCAGCCGGUGUAUCAGUCAGCACCUAUCAUAGUGCCUACGCAGCAACAGCCGCCUCCAGCCAAGAGAGAGAAAAAAACUAUAAGAAUUCGGGAUCCAAACCAGGGAGGUAAAGACAUAACAGAGGAGAUUAUGUCUGGAGGUGGCAGCAGAAAUCCUACUCCACCCAUAGGAAGACCCACGUCCACACCUACUCCUCCUCAGCAGCUGCCCAGCCAGGUCCCCGAGCACAGCCCUGUGGUUUAUGGGACUGUGGAGAGCGCUCAUCUUGCUGCCAGCACCCCUGUCACUGCAGCUAGCGACCAGAAGCAAGAGGAGAAGCCAAAACCAGAUCCAGUGUUAAAGUCUCCUUCCCCAGUCCUUAGGCUAGUCCUCAGUGGAGAGAAGAAAGAACAAGAAGGCCAGACAUCUGAAACUACUGCAAUAGUAUCCAUAGCAGAGCUUCCUCUGCCUCCAUCACCUACCACUGUUUCUUCUGUUGCUCGAAGUACAAUUGCAGCCCCCACCUCUUCUGCUCUUAGUAGCCAACCAAUAUUCACCACUGCUAUAGAUGACAGAUGUGAACUCUCAUCCCCAAGAGAAGACACAAUUCCUAUACCCAGCCUCACAUCUUGCACAGAAACAUCAGACCCUUUACCAACAAAUGAAAAUGAUGAUGAUAUAUGCAAGAAACCCUGUAGUGUAGCACCUAAUGAUAUUCCACUGGUUUCUAGUACUAACCUAAUUAAUGAAAUAAAUGGAGUUAGCGAAAAAUUAUCAGCCACGGAGAGCAUUGUGGAAAUAGUAAAACAGGAAGUAUUGCCAUUGACUCUUGAAUUGGAGAUUCUCGAAAAUCCCCCAGAAGAAAUGAAACUGGAGUGUAUCCCAGCUCCCAUCACCCCUUCCACAGUUCCUUCCUUUCCUCCAACUCCUCCAACUCCUCCAGCUUCUCCUCCUCACACUCCAGUCAUUGUUCCUGCUGCUGCCACUACUGUUAGUUCUCCGAGUGCUGCCAUCACAGUCCAGAGAGUCCUAGAGGAGGACGAGAGCAUAAGAACUUGCCUUAGUGAAGAUGCAAAAGAGAUUCAGAACAAAAUAGAGGUAGAAGCAGAUGGGCAAACAGAAGAGAUUUUGGAUUCUCAAAACUUAAAUUCAAGAAGGAGCCCUGUCCCAGCAAUCCCACAGAGUAUUGAUGAGGAAACUGAAGUUUGGAGCGAUCACAUC	circ
ENSG00000075151:-:1:20941490:21111383	ENSG00000075151	MSTRG.488.20	-	1	20941491	21111383	22	CCCUGUCCCAGCAAUCCCACAG	bsj
ENSG00000075151:-:1:20941490:21111383	ENSG00000075151	MSTRG.488.20	-	1	21111374	21111583	210	AAGCUCUAAAGAAUGAAGUUAGGAGAUCCGUUGGUGCUCUUAAUUAGGAAUCUGGGAGAGAUGUCUUAAAGGCUGUGUCACCUGGAUAGUCCACGGAAAGGAAAACUCAUGAUCUUUAUGGAAGAGCUAUGUAUAAUAAUGAAAUACUGCUUAGUAUGUGCUAAGCCCAUCAUAAGCCUUAUUUUGCUAAUUCUUUCCAGCAAUCCCACA	ie_up
ENSG00000075151:-:1:20941490:21111383	ENSG00000075151	MSTRG.488.20	-	1	20941291	20941500	210	CCUGUCCCAGGUAAGCCAUUCUGCCAUUAAUCUCGUGCUUGCUGAACAUGAAGAAGAGGCAGUGUUUGAGUUAUUUUUUAAUUGGCUACUUUCCUUGACUUCCAGAAACAUCGAAUGAAUGCUGAAAUUCCUAGUCUGGUUUCUUCAGUGGUGUGUUUGUGUUUUAGUACAACCUGCAAAAGAGUUACUCCAUUGUCUAAAAAUGCAAAU	ie_down

• Note:
  • id: unique identifier.
  • gene: represents the gene from which the circRNA arises.
  • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
  • strand: is the strand from which the gene is transcribed.
  • chrom: is the chromosome from which the circRNA is derived.
  • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
  • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
  • length: length of the extracted sequences.
  • seq: sequence used in the downstream analysis.
  • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.