ENSG00000075151:-:1:20941490:21111383

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000075151:-:1:20941490:21111383 ENSG00000075151 MSTRG.488.20 - 1 20941491 21111383 1941 CAAUCCCACAGAGUAUUGAUGAGGAAACUGAAGUUUGGAGCGAUCACAUCAUUUUCCCAAGAAUUCCUAGAGGACCUGUGCAACAACCUCUUGAGGAUCGAAUCUUCACUCCCGCUGUCUCAGCAGUCUACAGCACGGUAACACAAGUGGCAAGACAGCCGGGAACCCCUACCCCAUCCCCUUAUUCAGCACAUGAAAUAAACAAGGGGCAUCCAAAUCUUGCGGCAACGCCCCCGGGACAUGCAUCGUCCCCUGGACUCUCUCAAACCCCUUAUCCCUCUGGACAGAAUGCAGGUCCAACCACGCUGGUAUACCCUCAAACCCCUCAGACAAUGAAUUCACAACCUCAAACCCGUUCUCCGCCCAGCAGAACAGUGCCAAUACAUUGCACAGACAACUGGAAGAGGAGGAAGGUUUUGGAACAGACUCCCGUUUACAGGUCCUUGGCUGGAAGAGGCUGGAUAAAAUACUGCAUUUUUUUCCAGAGGCCUCAAAUACAGCCUCCUAGAGCUACCAUCCCGAACAGCAGUCCUUCCAUUCGUCCUGGUGCACAGACACCCACUGCAGUGUACCAGGCUAAUCAGCACAUCAUGAUGGUUAACCAUCUGCCCAUGCCGUACCCAGUGCCCCAGGGGCCUCAGUACUGUAUACCACAGUACCGUCAUAGUGGCCCUCCUUAUGUUGGGCCCCCCCAACAAUAUCCAGUUCAACCACCGGGGCCAGGUCCUUUUUAUCCUGGACCAGGACCUGGGGACUUCCCCAAUGCUUAUGGAACGCCUUUUUACCCAAGUCAGCCGGUGUAUCAGUCAGCACCUAUCAUAGUGCCUACGCAGCAACAGCCGCCUCCAGCCAAGAGAGAGAAAAAAACUAUAAGAAUUCGGGAUCCAAACCAGGGAGGUAAAGACAUAACAGAGGAGAUUAUGUCUGGAGGUGGCAGCAGAAAUCCUACUCCACCCAUAGGAAGACCCACGUCCACACCUACUCCUCCUCAGCAGCUGCCCAGCCAGGUCCCCGAGCACAGCCCUGUGGUUUAUGGGACUGUGGAGAGCGCUCAUCUUGCUGCCAGCACCCCUGUCACUGCAGCUAGCGACCAGAAGCAAGAGGAGAAGCCAAAACCAGAUCCAGUGUUAAAGUCUCCUUCCCCAGUCCUUAGGCUAGUCCUCAGUGGAGAGAAGAAAGAACAAGAAGGCCAGACAUCUGAAACUACUGCAAUAGUAUCCAUAGCAGAGCUUCCUCUGCCUCCAUCACCUACCACUGUUUCUUCUGUUGCUCGAAGUACAAUUGCAGCCCCCACCUCUUCUGCUCUUAGUAGCCAACCAAUAUUCACCACUGCUAUAGAUGACAGAUGUGAACUCUCAUCCCCAAGAGAAGACACAAUUCCUAUACCCAGCCUCACAUCUUGCACAGAAACAUCAGACCCUUUACCAACAAAUGAAAAUGAUGAUGAUAUAUGCAAGAAACCCUGUAGUGUAGCACCUAAUGAUAUUCCACUGGUUUCUAGUACUAACCUAAUUAAUGAAAUAAAUGGAGUUAGCGAAAAAUUAUCAGCCACGGAGAGCAUUGUGGAAAUAGUAAAACAGGAAGUAUUGCCAUUGACUCUUGAAUUGGAGAUUCUCGAAAAUCCCCCAGAAGAAAUGAAACUGGAGUGUAUCCCAGCUCCCAUCACCCCUUCCACAGUUCCUUCCUUUCCUCCAACUCCUCCAACUCCUCCAGCUUCUCCUCCUCACACUCCAGUCAUUGUUCCUGCUGCUGCCACUACUGUUAGUUCUCCGAGUGCUGCCAUCACAGUCCAGAGAGUCCUAGAGGAGGACGAGAGCAUAAGAACUUGCCUUAGUGAAGAUGCAAAAGAGAUUCAGAACAAAAUAGAGGUAGAAGCAGAUGGGCAAACAGAAGAGAUUUUGGAUUCUCAAAACUUAAAUUCAAGAAGGAGCCCUGUCCCAGCAAUCCCACAGAGUAUUGAUGAGGAAACUGAAGUUUGGAGCGAUCACAUC circ
ENSG00000075151:-:1:20941490:21111383 ENSG00000075151 MSTRG.488.20 - 1 20941491 21111383 22 CCCUGUCCCAGCAAUCCCACAG bsj
ENSG00000075151:-:1:20941490:21111383 ENSG00000075151 MSTRG.488.20 - 1 21111374 21111583 210 AAGCUCUAAAGAAUGAAGUUAGGAGAUCCGUUGGUGCUCUUAAUUAGGAAUCUGGGAGAGAUGUCUUAAAGGCUGUGUCACCUGGAUAGUCCACGGAAAGGAAAACUCAUGAUCUUUAUGGAAGAGCUAUGUAUAAUAAUGAAAUACUGCUUAGUAUGUGCUAAGCCCAUCAUAAGCCUUAUUUUGCUAAUUCUUUCCAGCAAUCCCACA ie_up
ENSG00000075151:-:1:20941490:21111383 ENSG00000075151 MSTRG.488.20 - 1 20941291 20941500 210 CCUGUCCCAGGUAAGCCAUUCUGCCAUUAAUCUCGUGCUUGCUGAACAUGAAGAAGAGGCAGUGUUUGAGUUAUUUUUUAAUUGGCUACUUUCCUUGACUUCCAGAAACAUCGAAUGAAUGCUGAAAUUCCUAGUCUGGUUUCUUCAGUGGUGUGUUUGUGUUUUAGUACAACCUGCAAAAGAGUUACUCCAUUGUCUAAAAAUGCAAAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001030397 0.0001130379 3.188321 GCAUAA GCAUAA
MATR3 7 739 0.004121587 0.0010724109 1.942342 AAUCUU,AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SUPV3L1 1 199 0.001030397 0.0002898408 1.829867 CCGCCC CCGCCC
IGF2BP1 7 831 0.004121587 0.0012057377 1.773284 ACCCGU,AGCACC,CCCGUU,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
CNOT4 2 314 0.001545595 0.0004564992 1.759478 GACAGA GACAGA
SNRPB2 7 991 0.004121587 0.0014376103 1.519527 AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM6 7 1054 0.004121587 0.0015289102 1.430696 AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PTBP2 1 267 0.001030397 0.0003883867 1.407634 CUCUCU CUCUCU
TUT1 4 678 0.002575992 0.0009840095 1.388384 AAAUAC,AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
AGO1 3 548 0.002060793 0.0007956130 1.373061 AGGUAG,GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBMY1A1 2 489 0.001545595 0.0007101099 1.122048 ACAAGA,CAAGAC ACAAGA,CAAGAC
YBX2 8 1480 0.004636785 0.0021462711 1.111293 AACAAC,AACAUC,ACAACU,ACAUCA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
YBX1 2 19 0.13636364 0.001309929 6.701826 CAGCAA,CCAGCA AACCAC,ACACCA,ACAUCU,ACCACC,CACCAC,CAGCAA,CCACCA,CCAGCA,CCUGCG,CUGCGG,GAUCUG,GCCUGC,UCCAGC,UGCGGU
IGF2BP2 1 34 0.09090909 0.002292376 5.309509 GCAAUC AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAAAC,CAAUAC,CAAUCA,CAAUUC,CACUCA,CAUACA,CAUUCA,CCAUAC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC
SRSF1 2 625 0.13636364 0.041000786 1.733736 CCAGCA,CCCAGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA,AGAAGA AAAAGA,AGAAGA
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAUC,ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CELF5 6 669 0.016666667 0.0033756550 2.303726 GUGUGU,GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 7 776 0.019047619 0.0039147521 2.282618 GGUGUG,GUGUGU,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 9 1022 0.023809524 0.0051541717 2.207726 GUGUGU,GUGUUU,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
SRSF4 4 558 0.011904762 0.0028164047 2.079612 AAGAAG,AGAAGA,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
A1CF 4 598 0.011904762 0.0030179363 1.979904 UAAUUA,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM46 8 1091 0.021428571 0.0055018138 1.961556 AAUGAA,AUCAUA,AUGAAA,AUGAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF1 7 1097 0.019047619 0.0055320435 1.783726 GUGUGU,GUUUGU,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAAGAA,AAGAAG,AAGAGG,AGAAGA,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PABPC3 1 310 0.004761905 0.0015669085 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GAAUGA,GUGUGU,UGAAUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUAUGU,GUGUGU,UAUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
YTHDC1 6 1254 0.016666667 0.0063230552 1.398272 GAAUGC,GGCUAC,UACUGC,UAGUAC,UCGUGC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TRA2B 7 1447 0.019047619 0.0072954454 1.384543 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
YBX1 6 1321 0.016666667 0.0066606207 1.323237 AACAUC,ACAUCG,CAGCAA,CAUCAU,CCAGCA,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 CGUUGG,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,AGAAGA,CACGGA,GAAGAA,GGAAGA,UAAAGG AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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