ENSG00000065526:+:1:15909323:15936266

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000065526:+:1:15909323:15936266 ENSG00000065526 MSTRG.376.9 + 1 15909321 15936266 9145 CAGUGAUUCCAGCAGUAGUUCAAGUGAUGAUUCUCCAGCUCGAUCAGUUCAGUCUGCAGCAGUCCCUGCACCCACUUCCCAGUUGCUUUCAUCUCUGGAAAAAGAUGAGCCCCGUAAAAGUUUUGGCAUCAAGGUCCAGAAUCUUCCAGUACGCUCUACAGAUACAAGCCUUAAAGAUGGCCUUUUCCAUGAAUUUAAGAAAUUUGGAAAAGUAACUUCAGUGCAGAUACAUGGAACUUCAGAAGAGAGGUAUGGUCUGGUAUUCUUUCGGCAGCAAGAGGACCAAGAAAAAGCCUUGACUGCAUCAAAAGGAAAACUUUUCUUUGGCAUGCAGAUUGAAGUAACAGCAUGGAUAGGUCCAGAAACAGAAAGUGAAAAUGAAUUUCGCCCCUUGGAUGAAAGGAUAGAUGAAUUUCACCCCAAAGCAACAAGAACUCUCUUUAUUGGCAACCUUGAAAAAACCACUACUUACCAUGACCUUCGCAACAUCUUCCAGCGCUUUGGAGAAAUUGUGGAUAUUGACAUUAAGAAAGUAAAUGGAGUUCCUCAGUAUGCGUUUCUGCAAUACUGUGAUAUUGCUAGCGUUUGUAAAGCUAUUAAGAAGAUGGAUGGGGAAUAUCUUGGAAAUAAUCGCCUCAAGCUGGGUUUUGGAAAGAGCAUGCCUACAAACUGCGUGUGGCUAGAUGGGCUUUCUUCGAAUGUGUCAGAUCAGUAUUUAACACGACAUUUCUGCCGAUAUGGGCCUGUGGUAAAGGUGGUGUUUGACCGCUUAAAAGGCAUGGCCCUGGUUCUCUACAAUGAAAUUGAAUAUGCACAAGCAGCUGUAAAAGAGACCAAAGGGAGGAAAAUCGGUGGGAAUAAAAUUAAGGUGGAUUUUGCAAAUCGGGAAAGUCAGCUGGCUUUUUAUCACUGCAUGGAGAAAUCUGGUCAAGACAUCAGAGACUUUUAUGAAAUGUUAGCCGAAAGAAGAGAGGAACGAAGGGCAUCCUACGACUAUAACCAAGAUCGUACAUAUUAUGAGAGUGUUCGAACUCCAGGCACUUAUCCUGAGGAUUCCAGGCGGGACUAUCCAGCUCGAGGGAGAGAGUUUUAUUCAGAAUGGGAAACUUACCAAGGAGACUACUAUGAAUCACGAUACUACGAUGAUCCUCGGGAAUACAGGGAUUACAGGAAUGAUCCUUAUGAACAAGAUAUUAGGGAAUAUAGUUACAGGCAAAGGGAACGAGAAAGAGAACGUGAAAGAUUUGAGUCUGACCGGGACAGAGACCAUGAGAGGAGGCCGAUUGAACGAAGUCAAAGUCCUGUUCACUUGCGACGUCCACAGAGUCCUGGAGCGUCUCCCUCUCAGGCAGAGAGGUUGCCGAGUGAUUCUGAGAGGAGGCUUUACAGCCGAUCCUCAGACCGGAGUGGAAGCUGUAGCUCACUCUCCCCUCCAAGAUAUGAGAAACUGGACAAGUCUCGUUUGGAGCGCUAUACAAAAAAUGAAAAGACAGAUAAAGAACGAACUUUUGAUCCGGAGAGAGUGGAGAGAGAGAGACGCUUAAUACGGAAGGAAAAAGUGGAAAAGGACAAAACUGACAAGCAGAAACGCAAAGGAAAGGUUCACUCCCCUAGUUCUCAGUCUUCAGAAACGGACCAAGAAAAUGAGCGAGAGCAAAGCCCUGAAAAGCCCAGGAGUUGUAAUAAACUGAGCAGAGAGAAAGCUGACAAAGAGGGAAUAGCGAAAAACCGCCUGGAACUCAUGCCUUGCGUGGUUUUGACUCGAGUGAAAGAGAAAGAGGGAAAGGUCAUUGACCACACUCCUGUGGAAAAGUUGAAAGCCAAGCUUGAUAAUGACACUGUCAAAUCUUCUGCCCUGGACCAGAAACUUCAGGUCUCUCAGACGGAGCCUGCAAAAUCUGACUUGUCUAAACUGGAAUCAGUUAGAAUGAAAGUACCAAAGGAAAAGGGGCUUUCAAGCCAUGUUGAAGUGGUGGAGAAGGAAGGCAGGCUUAAAGCCAGGAAGCACCUCAAGCCUGAGCAGCCUGCAGAUGGGGUAAGUGCUGUGGAUCUGGAGAAGCUGGAAGCCAGGAAAAGGCGCUUUGCAGAUUCCAAUUUAAAAGCAGAAAAGCAAAAACCAGAGGUCAAGAAAAGCAGUCCAGAGAUGGAGGAUGCUCGCGUGCUUUCAAAAAAGCAGCCUGACGUGUCCUCUAGAGAGGUCAUUCUGCUGAGGGAAGGAGAGGCUGAAAGAAAGCCUGUGAGGAAAGAAAUUCUUAAAAGAGAAUCUAAAAAAAUCAAACUGGACAGACUUAAUACUGUUGCCAGCCCCAAAGACUGUCAGGAGCUUGCCAGUAUUUCUGUUGGGUCUGGCUCAAGGCCCAGCUCAGACCUACAAGCAAGACUGGGAGAACUAGCAGGUGAAUCUGUGGAAAAUCAAGAAGUCCAAUCAAAAAAGCCCAUUCCCUCAAAACCACAGCUCAAACAGCUGCAGGUAUUAGAUGAUCAAGGACCAGAGAGAGAAGACGUUAGGAAAAACUAUUGCAGUCUUCGUGAUGAAACACCUGAACGUAAAUCAGGCCAAGAGAAAUCACAUUCAGUAAAUACUGAAGAAAAAAUUGGCAUUGACAUCGAUCACACGCAGAGUUACCGAAAACAAAUGGAACAGAGUCGUAGGAAACAGCAGAUGGAAAUGGAAAUAGCCAAGUCUGAGAAGUUUGGCAGUCCUAAAAAAGAUGUAGAUGAAUAUGAAAGACGUAGCCUCGUUCACGAGGUAGGCAAACCCCCUCAAGAUGUCACUGAUGACUCUCCUCCUAGCAAAAAGAAAAGGAUGGAUCAUGUCGAUUUUGAUAUCUGCACCAAGCGAGAACGGAAUUACAGAAGUUCACGCCAAAUCAGCGAAGAUUCUGAAAGGACUGGUGGUUCUCCCAGUGUCCGACAUGGUUCCUUCCAUGAAGAUGAGGAUCCCAUAGGCUCCCCUAGGCUACUGUCAGUAAAAGGGUCUCCUAAAGUAGAUGAAAAAGUCCUCCCCUAUUCUAACAUAACAGUCAGGGAAGAGUCUUUAAAAUUUAAUCCUUAUGAUUCUAGCAGGAGAGAACAGAUGGCAGAUAUGGCCAAAAUAAAACUAUCUGUCUUGAAUUCUGAAGAUGAACUAAAUCGUUGGGACUCUCAGAUGAAACAGGAUGCUGGCAGAUUUGAUGUGAGUUUCCCAAACAGCAUAAUUAAGAGAGAUAGCCUUCGAAAAAGGUCUGUACGAGAUCUGGAACCUGGUGAGGUGCCUUCUGAUUCUGACGAAGAUGGUGAACACAAAUCCCACUCACCCAGAGCCUCUGCAUUAUAUGAAAGUUCUCGAUUGUCUUUUUUAUUGAGGGACAGAGAAGACAAGCUACGUGAGCGAGAUGAAAGACUCUCUAGUUCUUUAGAAAGGAACAAAUUUUACUCUUUUGCAUUGGAUAAGACAAUCACACCAGACACUAAAGCUUUGCUUGAAAGAGCUAAAUCCCUCUCUUCAUCUCGUGAAGAAAAUUGGUCUUUUCUUGAUUGGGACUCCCGAUUUGCAAAUUUUCGAAACAACAAAGAUAAAGAAAAGGUUGACUCUGCUCCAAGACCUAUUCCAUCCUGGUACAUGAAAAAGAAGAAAAUUAGGACUGAUUCAGAAGGGAAAAUGGAUGAUAAGAAAGAGGACCAUAAAGAAGAAGAGCAAGAGAGGCAGGAAUUGUUUGCUUCUCGUUUUUUACACAGCUCAAUCUUUGAACAAGAUUCCAAGCGAUUGCAGCAUCUAGAGAGAAAAGAGGAAGAUUCUGACUUCAUUUCUGGUAGGAUCUAUGGGAAGCAGACAUCUGAGGGAGCAAACAGCACAACUGAUUCCAUUCAAGAACCAGUAGUUCUGUUCCAUAGCAGAUUUAUGGAGCUCACACGGAUGCAACAGAAAGAAAAAGAAAAAGACCAGAAACCCAAAGAGGUUGAGAAACAGGAAGAUACAGAGAAUCAUCCCAAGACCCCAGAAUCUGCUCCUGAGAAUAAAGAUUCAGAACUGAAAACUCCACCUUCCGUUGGGCCUCCAAGUGUCACAGUCGUAACUCUAGAAUCAGCCCCAUCAGCACUAGAGAAGACCACUGGUGACAAAACGGUAGAGGCGCCUUUGGUAACAGAAGAGAAGACUGUGGAGCCAGCUACCGUCUCAGAAGAAGCAAAGCCUGCAUCUGAACCUGCUCCUGCCCCUGUGGAACAGCUGGAACAAGUAGACCUGCCCCCAGGAGCAGACCCCGAUAAAGAAGCUGCCAUGAUGCCUGCGGGUGUUGAGGAAGGUUCAUCAGGUGACCAGCCGCCUUAUCUGGAUGCCAAGCCUCCAACUCCCGGGGCCUCGUUUUCCCAGGCAGAGAGCAACGUAGAUCCAGAGCCUGACAGUACCCAGCCACUUUCAAAACCAGCUCAGAAGUCUGAGGAAGCCAAUGAGCCAAAGGCCGAAAAGCCAGACGCCACUGCAGAUGCUGAGCCUGAUGCAAACCAGAAAGCCGAAGCUGCUCCUGAGUCUCAGCCCCCAGCUUCUGAAGAUUUAGAGGUUGAUCCUCCAGUUGCUGCAAAGGAUAAAAAGCCAAACAAAAGCAAGCGUUCAAAGACCCCUGUUCAGGCAGCUGCAGUGAGUAUCGUGGAGAAGCCCGUCACAAGGAAGAGUGAGAGGAUAGACCGGGAAAAACUCAAGCGGUCCAAUUCUCCUCGGGGAGAAGCACAGAAGCUUUUGGAAUUGAAGAUGGAGGCAGAGAAGAUUACAAGGACUGCUUCUAAAAACUCUGCUGCAGACCUUGAACAUCCCGAACCAAGUUUGCCUCUCAGCCGAACAAGGCGCCGGAAUGUAAGGAGCGUCUAUGCAACCAUGGGUGACCAUGAAAACCGCUCUCCUGUCAAAGAGCCCGUUGAGCAACCAAGAGUGACCAGAAAGAGAUUGGAGCGAGAGCUUCAGGAGGCUGCAGCGGUUCCCACCACCCCUCGGAGGGGAAGGCCUCCAAAGACACGCCGGCGAGCCGAUGAAGAGGAGGAGAACGAGGCCAAGGAACCUGCAGAAACACUCAAGCCACCUGAGGGAUGGCGGUCGCCAAGGUCCCAGAAAACUGCAGCUGGUGGUGGACCCCAAGGGAAAAAGGGAAAAAAUGAACCGAAGGUGGAUGCUACACGUCCUGAGGCCACCACUGAGGUGGGCCCCCAAAUAGGCGUGAAAGAGAGCUCCAUGGAACCCAAGGCUGCUGAGGAGGAGGCAGGGAGUGAACAGAAACGUGACAGAAAAGAUGCUGGCACAGACAAAAACCCCCCUGAAACCGCCCCUGUUGAAGUUGUAGAGAAAAAACCGGCCCCUGAAAAAAACUCCAAAUCAAAGAGAGGAAGAUCUCGAAACUCCAGGUUAGCAGUGGACAAAUCUGCAAGUCUGAAAAAUGUGGAUGCUGCUGUCAGUCCCAGGGGGGCUGCAGCACAGGCAGGGGAGAGGGAAUCUGGGGUGGUGGCAGUCUCCCCUGAGAAAAGUGAGAGUCCCCAAAAGGAGGAUGGUUUAUCAUCCCAGUUGAAAAGUGAUCCAGUUGAUCCAGACAAGGAACCAGAGAAAGAAGACGUGUCUGCCUCUGGGCCGUCCCCAGAAGCCACCCAGUUAGCCAAGCAGAUGGAGCUGGAGCAGGCCGUGGAACACAUCGCAAAGCUCGCUGAGGCCUCUGCCUCUGCUGCCUAUAAGGCAGAUGCACCAGAGGGCCUUGCCCCAGAGGACAGGGACAAGCCUGCACACCAAGCAAGUGAAACAGAGCUGGCUGCGGCCAUCGGCUCCAUCAUCAAUGACAUUUCUGGGGAGCCAGAAAACUUCCCAGCACCUCCACCUUAUCCUGGAGAAUCCCAGACAGAUCUGCAACCCCCCGCAGGUGCACAGGCGCUGCAGCCUUCUGAGGAAGGAAUGGAGACAGAUGAGGCUGUAUCUGGCAUCCUGGAAACUGAGGCUGCUACAGAAUCUUCUAGGCCUCCAGUCAAUGCUCCUGACCCCUCAGCCGGCCCAACAGAUACCAAGGAAGCCAGAGGAAAUAGCAGUGAAACCUCACACUCAGUGCCAGAAGCCAAAGGGUCUAAAGAAGUGGAAGUCACUCUUGUUCGGAAAGACAAAGGGCGCCAGAAAACAACCCGAUCACGCCGCAAGCGAAACACAAACAAGAAAGUGGUGGCUCCUGUAGAGAGCCAUGUCCCUGAAUCCAACCAAGCUCAAGGUGAGAGUCCUGCUGCAAAUGAGGGGACAACAGUACAGCACCCCGAAGCCCCACAGGAAGAAAAGCAGAGUGAGAAACCCCAUUCCACUCCUCCUCAGUCAUGUACUUCUGACCUAAGCAAGAUUCCCUCCACAGAGAAUUCGUCCCAAGAAAUCAGUGUUGAGGAAAGGACUCCAACCAAAGCAUCUGUGCCCCCAGACCUUCCCCCACCUCCCCAGCCAGCACCGGUGGAUGAGGAGCCUCAAGCCAGGUUCAGGGUGCAUUCCAUCAUUGAAAGUGACCCGGUGACCCCACCCAGCGAUCCAAGCAUCCCCAUACCCACACUGCCUUCUGUAACUGCAGCAAAGCUCUCACCUCCUGUCGCCUCUGGGGGGAUCCCACACCAGAGCCCCCCUACUAAGGUGACAGAGUGGAUCACAAGGCAGGAGGAGCCACGGGCUCAGUCUACUCCAUCUCCAGCUCUUCCCCCAGACACAAAGGCCUCUGAUGUUGACACCAGCUCCAGCACCCUGAGGAAGAUUCUCAUGGACCCCAAGUAUGUGUCUGCCACAAGUGUCACUUCCACAAGUGUCACCACAGCCAUUGCAGAGCCUGUCAGUGCUGCCCCUUGCCUACAUGAGGCCCCGCCCCCGCCAGUUGACUCUAAAAAGCCUUUAGAAGAAAAAACAGCACCUCCAGUGACAAACAACUCUGAGAUACAAGCCUCGGAGGUGCUGGUAGCUGCUGACAAGGAAAAGGUGGCUCCAGUCAUUGCUCCCAAAAUUACCUCUGUUAUUAGCCGGAUGCCUGUCAGCAUUGACCUGGAAAAUUCACAGAAGAUAACCUUGGCAAAACCAGCUCCUCAAACCCUCACUGGUCUGGUGAGCGCACUCACUGGCCUGGUGAACGUCUCCCUGGUCCCGGUGAAUGCCCUGAAAGGCCCCGUGAAGGGCUCAGUGACCACACUGAAAAGUUUGGUGAGCACCCCUGCUGGGCCCGUGAACGUCCUGAAAGGGCCUGUGAAUGUUCUUACGGGGCCAGUGAAUGUUCUCACCACUCCAGUGAACGCCACGGUGGGCACAGUGAAUGCCGCCCCAGGCACAGUCAAUGCCGCUGCGAGUGCAGUGAAUGCCACAGCAAGUGCAGUGACCGUCACAGCGGGUGCGGUUACUGCUGCAUCUGGUGGUGUAACGGCCACAACAGGCACGGUGACAAUGGCAGGGGCAGUGAUUGCGCCGUCAACAAAGUGCAAACAGAGAGCGAGUGCUAAUGAAAACAGUCGGUUCCACCCAGGGUCCAUGCCUGUGAUCGACGAUCGUCCGGCAGACGCGGGCUCAGGGGCGGGGCUGCGUGUGAACACUUCUGAAGGGGUUGUGCUCCUGAGUUACUCAGGGCAGAAGACCGAAGGCCCACAGCGGAUCAGCGCCAAGAUCAGCCAGAUCCCCCCGGCCAGUGCAAUGGACAUUGAAUUUCAGCAGUCAGUGUCCAAGUCCCAGGUCAAACCUGAUUCUGUCACAGCAUCGCAGCCUCCAUCCAAAGGCCCUCAAGCUCCUGCAGGCUAUGCGAACGUGGCCACCCAUUCCACGUUGGUACUGACCGCCCAGACAUAUAAUGCCUCUCCUGUGAUUUCGUCUGUGAAGGCCGAUAGGCCAUCCUUGGAGAAGCCCGAGCCCAUUCACCUCUCGGUGUCCACGCCUGUCACCCAGGGAGGCACAGUGAAGGUUCUCACCCAGGGGAUCAACACACCCCCUGUGCUGGUUCACAACCAGCUGGUCCUCACCCCAAGCAUUGUCACCACAAACAAGAAGCUUGCUGACCCCGUCACCCUUAAAAUCGAGACCAAGGUCCUUCAGCCGGCCAACCUGGGGUCCACGCUCACGCCCCACCACCCUCCUGCUCUGCCCAGCAAACUGCCUACAGAAGUCAACCAUGUCCCCUCGGGGCCCAGCAUCCCAGCAGAUCGAACUGUCUCCCAUUUGGCAGCUGCAAAGCUAGAUGCUCAUUCUCCUCGACCAAGUGGACCCGGGCCAUCCUCAUUCCCAAGGGCAAGCCACCCCAGCAGUACUGCAUCUACGGCGCUCUCCACCAACGCCACAGUCAUGCUGGCUGCAGGCAUCCCAGUGCCCCAGUUCAUCUCCAGCAUCCACCCAGAGCAGUCUGUCAUCAUGCCACCCCACAGCAUCACCCAGACUGUGUCCCUGAGCCACCUCUCCCAGGGCGAGGUGAGAAUGAACACUCCCACGCUGCCCAGUAUCACCUACAGCAUCCGGCCAGAAGCGCUUCACUCUCCUCGGGCUCCGCUGCAGCCCCAGCAAAUAGAGGUCAGGGCCCCACAGCGUGCCAGCACCCCGCAGCCAGCCCCAGCUGGUGUGCCUGCACUGGCCUCCCAGCACCCUCCCGAGGAGGAAGUGCAUUAUCACCUUCCUGUCGCUCGAGCCACAGCCCCUGUGCAGUCAGAGGUACUAGUCAUGCAGUCUGAGUACCGACUGCACCCCUAUACUGUGCCACGGGAUGUGAGGAUCAUGGUGCAUCCACAUGUGACGGCAGUCAGCGAGCAGCCCAGGGCCGCGGAUGGGGUGGUGAAGGUGCCACCAGCCAGCAAGGCCCCUCAGCAGCCAGGGAAGGAAGCUGCCAAGACACCAGAUGCCAAAGCUGCCCCCACCCCCACCCCUGCCCCCGUCCCUGUCCCUGUCCCCCUUCCUGCCCCUGCUCCUGCCCCUCAUGGUGAGGCCCGUAUCCUCACAGUUACCCCCAGUAACCAACUCCAGGGGCUGCCUCUGACCCCUCCUGUGGUGGUGACCCAUGGGGUGCAGAUUGUGCACUCCAGCGGGGAGCUGUUUCAAGAGUACCGGUACGGCGACAUCCGCACCUACCACCCCCCGGCCCAGCUCACACACACUCAGUUUCCCGCCGCUUCCUCUGUUGGCCUGCCUUCCCGGACCAAGACAGCUGCUCAGCAGUGAUUCCAGCAGUAGUUCAAGUGAUGAUUCUCCAGCUCGAUCAGUUC circ
ENSG00000065526:+:1:15909323:15936266 ENSG00000065526 MSTRG.376.9 + 1 15909321 15936266 22 CAGCUGCUCAGCAGUGAUUCCA bsj
ENSG00000065526:+:1:15909323:15936266 ENSG00000065526 MSTRG.376.9 + 1 15909121 15909330 210 AUUAUACUUUUGUGCUCCUGCAUAUUUAUUGUCUUCUGCCACCUCUGAAGGUAGAGUACGAGAUAGAUGUGUAGAAUGCAGGGCCUCCAGAAAUUCCAGUCUGAAAAUUUAGACCUAUUAGUUAUUUUAAGAAGUUUUCUAAUGCUGCUCAUUUUCUGUUUGUCUUUUCACUAAAGUUUGUUGUUGUUGCCUUUUUGCAGCAGUGAUUCC ie_up
ENSG00000065526:+:1:15909323:15936266 ENSG00000065526 MSTRG.376.9 + 1 15936257 15936466 210 AGCUGCUCAGGUGAGCCAGCCAGGUAUCUCCCCACUGUCUGUUGGGCAUGUGCUUGUGGGGCUCAGCAGGCUUUUAAGCCAAGAUGUGUGAAAGAAAUCAGGGGCCAGGUGUGGUGGCUUAUGCCUGUAAUCCCAGCACUGUGGGAGGCCCAGAUGGGAGGACUGCUUAAGCCCGGGAGUUCGAGACCAGCCUGGGCAACAUGGCAAAAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 8 314 0.0009841443 0.0004564992 1.108257 GACAGA GACAGA
SART3 70 2634 0.0077638054 0.0038186524 1.023700 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRPA 1 39 0.09090909 0.002619859 5.116864 AGCAGU AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,GAGCAG,GAUACC,GCAGUA,GGAGAU,GGGUAU,GUAGGC,GUAGUG,UAUGCU,UCCUGC,UGCACG,UUCCUG,UUGCAC
SRSF2 2 479 0.13636364 0.031438302 2.116864 AGCAGU,GCAGUG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
CELF2 8 881 0.021428571 0.0044437727 2.269679 AUGUGU,GUCUGU,GUUGUU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
ZNF638 5 646 0.014285714 0.0032597743 2.131729 GUUGUU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM28 2 340 0.007142857 0.0017180572 2.055723 GUGUAG,UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CELF1 8 1097 0.021428571 0.0055320435 1.953651 CUGUCU,GUUUGU,UGUCUG,UGUGUG,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF6 7 1196 0.019047619 0.0060308343 1.659181 GUGGGG,GUGGUG,GUGUGG,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GUUGUU,UGUGUG,UUGUGC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
YTHDC1 6 1254 0.016666667 0.0063230552 1.398272 GAAUGC,GACUGC,GAGUAC,UAAUGC,UCCUGC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
CELF4 3 776 0.009523810 0.0039147521 1.282618 GGUGUG,GUGUGG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MBNL1 15 3258 0.038095238 0.0164197904 1.214175 CUGCCA,CUGCUC,CUGCUU,CUUGUG,GCUGCU,GCUUGU,GCUUUU,GGCUUU,GUGCUC,GUGCUU,UGCUGC,UUGCCU,UUGUGC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 GUGUGA,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GCUUAA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 GUGCUU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AAGAAA,AAGAAG,GAAAGA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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