ENSG00000151292:+:5:123545416:123545841

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000151292:+:5:123545416:123545841 ENSG00000151292 MSTRG.26826.1 + 5 123545417 123545841 425 CUCUCUAUCAAUAUCAGCUCACAUCAUUGAAAAGAUAAUUUUGAAGACAUGUUUUGCUGAAAAGACACUAAGAAAAAUUUUACGAAUGGGAUGAACAUGCUCCAGUUAAUUGACUACCUACUGCAAUUUGAAUGUUAACAUUACCCAUCUGGUACAGUUACCUAGUGAUGUACCUAUUUUCACAAUACCCUGUUUCAGUGUGCUUGUCUUGAUUAAAGAAUUCAAAGUGGAGUACCGCAAACUUGAUAUGGAAAAUAAAAAGAAAGACAAGGACAAAUCAGAUGAUAGAAUGGCACGACCUAGUGGUCGAUCGGGACACAACACUCGAGGAACUGGGUCUUCAUCGUCUGGAGUUUUAAUGGUUGGACCUAACUUUAGAGUUGGAAAAAAAAUUGGAUGUGGCAAUUUUGGAGAAUUACGAUUAGCUCUCUAUCAAUAUCAGCUCACAUCAUUGAAAAGAUAAUUUUGAAGACAU circ
ENSG00000151292:+:5:123545416:123545841 ENSG00000151292 MSTRG.26826.1 + 5 123545417 123545841 22 AUUACGAUUAGCUCUCUAUCAA bsj
ENSG00000151292:+:5:123545416:123545841 ENSG00000151292 MSTRG.26826.1 + 5 123545217 123545426 210 GAUAUCUUUGUUUCGUAUCUUUGUUAUUAAGGUAUAUAAAUAAAGGGUAGUGGUUAAUUUAAAAGUAUACUGUGGUUUGAUUUCAAUGGGCAUCAAUAGAUAGCAGUAAUUCUUGCCUAAGCUUUUGUUAUGUUAUCUAAUUUCCCAGACAUAUAUUUUAAAAUUCUUAGUUGACUAAUUUCCUUUUCUUAAUAUUCUAGCUCUCUAUCA ie_up
ENSG00000151292:+:5:123545416:123545841 ENSG00000151292 MSTRG.26826.1 + 5 123545832 123546041 210 UUACGAUUAGGUAAGACUAUUUUGUUUAUUCCAUUAUGUUAGAAACAUUUUAAAAAUUGGAAGAUACUUUUUAAUGAAAAUGAUUUAGUUAUUUAAUUGUUUAGUUGUUUAAUGGUUGUGGUAAUUUUAAAGAAUAAAGAUGUUGGAAAUUUCUUUUGUAGUUGUAUUUUCAUGUGUAAGGAAUUCCCUAGUAUAGGAGUGUCUACUUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 1 267 0.004705882 0.0003883867 3.598900 CUCUCU CUCUCU
RBM25 1 268 0.004705882 0.0003898359 3.593527 AUCGGG AUCGGG,CGGGCA,UCGGGC
IGHMBP2 3 813 0.009411765 0.0011796520 2.996104 AAAAAA AAAAAA
RBM42 1 407 0.004705882 0.0005912752 2.992564 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPAB 7 1782 0.018823529 0.0025839306 2.864898 AAAGAC,AAGACA,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
EIF4B 4 1179 0.011764706 0.0017100607 2.782346 GUUGGA,UUGGAA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 4 1222 0.011764706 0.0017723764 2.730708 AAAAGA AAAAGA,AGAAGA
PABPC4 4 1251 0.011764706 0.0018144033 2.696898 AAAAAA,AAAAAG AAAAAA,AAAAAG
AGO2 5 1830 0.014117647 0.0026534924 2.411535 AAAAAA,AAAGUG,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
ERI1 1 632 0.004705882 0.0009173461 2.358927 UUUCAG UUCAGA,UUUCAG
TUT1 1 678 0.004705882 0.0009840095 2.257721 CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SART3 6 2634 0.016470588 0.0038186524 2.108757 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TARDBP 6 2654 0.016470588 0.0038476365 2.097848 GAAUGG,GAAUGU,GUUUUG,UGAAUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SYNCRIP 3 1634 0.009411765 0.0023694485 1.989914 AAAAAA AAAAAA,UUUUUU
A1CF 3 1642 0.009411765 0.0023810421 1.982872 AUAAUU,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SSB 2 1260 0.007058824 0.0018274462 1.949599 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PABPC1 9 4443 0.023529412 0.0064402624 1.869274 AAAAAA,ACAAAU,ACGAAU,AGAAAA,CAAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPU 3 1965 0.009411765 0.0028491350 1.723941 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
YBX2 2 1480 0.007058824 0.0021462711 1.717595 ACAACA,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NONO 2 1498 0.007058824 0.0021723567 1.700167 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ENOX1 5 3195 0.014117647 0.0046316558 1.607900 AAGACA,AGGACA,GUACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZCRB1 2 1605 0.007058824 0.0023274215 1.600695 GAAUUA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPD 4 2837 0.011764706 0.0041128408 1.516258 AAAAAA,UUAGAG AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
KHDRBS3 5 3429 0.014117647 0.0049707696 1.505959 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PABPC5 3 2400 0.009411765 0.0034795387 1.435569 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SNRNP70 1 1237 0.004705882 0.0017941145 1.391193 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
KHDRBS2 2 1858 0.007058824 0.0026940701 1.389640 AAUAAA,AUAAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ACO1 1 1283 0.004705882 0.0018607779 1.338559 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CSTF2 2 1967 0.007058824 0.0028520334 1.307437 GUUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TIAL1 14 10182 0.035294118 0.0147572438 1.258004 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,UAUUUU,UUCAGU,UUUCAG,UUUUAA,UUUUCA AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FXR2 4 3434 0.011764706 0.0049780156 1.240823 AGACAA,GACAAA,GACAAG,GGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
LIN28A 5 4315 0.014117647 0.0062547643 1.174472 GGAGAA,GGAGUA,UGGAGA,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
PPIE 24 18315 0.058823529 0.0265436196 1.148028 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUUU,AAUAAA,AAUUUU,AUAAAA,AUAAUU,AUUAAA,AUUUUA,UAAAAA,UAAUUU,UAUUUU,UUAAUU,UUUAAU,UUUUAA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RBM46 5 4554 0.014117647 0.0066011240 1.096716 AUCAAU,AUCAUU,AUGAUA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SRSF10 17 13860 0.042352941 0.0200874160 1.076170 AAAAGA,AAAGAA,AAAGAC,AAGAAA,AAGACA,AGACAA,GAAAGA,GACAAA,GAGGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPDL 10 8759 0.025882353 0.0126950266 1.027705 AAUACC,ACAUUA,ACUAAG,ACUGCA,ACUUUA,AUUAGC,CUAACU,CUUUAG,GAUUAG,GGAGUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPDL 1 35 0.09090909 0.002357873 5.268867 AUUAGC AACAGC,AAUACC,AAUUUA,ACACCA,ACAGCA,ACCAGA,AGAUAU,AGUAGG,AUCUGA,AUUAGC,AUUAGG,CACGCA,CCAGAC,CUAAGC,CUAAGU,CUAGAU,CUAGGA,CUAGGC,CUUUAG,GAACUA,GAUUAG,GCACUA,GCUAGU,UGCGCA,UUAGCC,UUAGGC,UUUAGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
EIF4B 3 226 0.009523810 0.0011436921 3.057840 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
TUT1 2 230 0.007142857 0.0011638452 2.617602 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
A1CF 5 598 0.014285714 0.0030179363 2.242939 AGUAUA,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
RBM41 3 502 0.009523810 0.0025342604 1.909974 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AUUUAA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAGACU,AGACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
MSI1 6 961 0.016666667 0.0048468360 1.781850 UAGGAG,UAGGUA,UAGUUA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ELAVL1 23 3309 0.057142857 0.0166767432 1.776736 UAUUUA,UAUUUU,UGAUUU,UGGUUU,UUAGUU,UUAUUU,UUGAUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAU,CAUAUA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO1 1 283 0.004761905 0.0014308746 1.734641 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAUAU,UAAAUA,UAGAUA,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,AAUUGU,GUAUAU,UAAAUA,UAAUAU,UAGAUA,UAUAUA,UUAAUG,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ELAVL2 61 9826 0.147619048 0.0495112858 1.576050 AAUUUA,AAUUUU,AUACUU,AUAUUU,AUUUAA,AUUUAG,AUUUUA,AUUUUC,AUUUUG,CAUUUU,CUUUUU,GAUUUA,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUUA,UAUUUU,UCUUUU,UGAUUU,UGUAUU,UUAAUU,UUAGUU,UUAUGU,UUAUUU,UUCUUU,UUGAUU,UUGUAU,UUUAAU,UUUAGU,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUUA AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUGU,GUUGUU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PPIE 56 9262 0.135714286 0.0466696896 1.540015 AAAAAU,AAAAUU,AAAUAA,AAAUUU,AAUAAA,AAUAUU,AAUUUA,AAUUUU,AUAAAU,AUAUAA,AUAUAU,AUAUUU,AUUUAA,AUUUUA,UAAAAA,UAAAAU,UAAAUA,UAAUAU,UAAUUU,UAUAAA,UAUAUA,UAUAUU,UAUUAA,UAUUUA,UAUUUU,UUAAAA,UUAAUA,UUAAUU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF2 4 881 0.011904762 0.0044437727 1.421682 AUGUGU,GUUGUU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUAAU,AUCUAA,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUGAA,AAUGAU,AUCAAU,AUGAAA,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SFPQ 34 7087 0.083333333 0.0357114067 1.222509 AAGGAA,GGAAGA,GGUAAG,GUAAGA,GUAAUU,GUAGUG,GUAGUU,GUGGUU,UAAGGA,UAAUGG,UAAUUG,UAAUUU,UAGUGG,UAGUUG,UGAUUU,UGGAAG,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUU,UUGAUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
TIAL1 26 5597 0.064285714 0.0282043531 1.188580 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUG,CUUUUC,CUUUUG,CUUUUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUCA,UUUUUA AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 13 2916 0.033333333 0.0146966949 1.181474 AUCUAA,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 AAAUAA,AAUAAA,AUAAAG,UAAAUA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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