circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000163468:-:1:156310557:156310641
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000163468:-:1:156310557:156310641 | ENSG00000163468 | ENST00000368261 | - | 1 | 156310558 | 156310641 | 84 | ACGGGUACUUUGGUGGACAUGAAGGAACUGGGCAUAUGGGAGCCAUUGGCUGUGAAGCUGCAGACUUAUAAGACAGCAGUGGAGACGGGUACUUUGGUGGACAUGAAGGAACUGGGCAUAUGGGAGCCAUUGGC | circ |
| ENSG00000163468:-:1:156310557:156310641 | ENSG00000163468 | ENST00000368261 | - | 1 | 156310558 | 156310641 | 22 | CAGCAGUGGAGACGGGUACUUU | bsj |
| ENSG00000163468:-:1:156310557:156310641 | ENSG00000163468 | ENST00000368261 | - | 1 | 156310632 | 156310841 | 210 | GAAAUCUUUCUCUCCUUUUAGUCUUUGACUUGUUUGCUGUCAUUGCCAUUUUUCCCUGUCCCUUCCAUACUGGUCCAUUGUUUUUUACUUCAUUUCUUACCUGAUGUUUCCUGUUAACUUAUUUUCCCCUUUACUUCUUGCUUCAAUUGCAGGCCAAGCACACCCAGGAGAACUGUGAGACCUGGGGUGUAAAUGGUGAGACGGGUACUU | ie_up |
| ENSG00000163468:-:1:156310557:156310641 | ENSG00000163468 | ENST00000368261 | - | 1 | 156310358 | 156310567 | 210 | AGCAGUGGAGGUAAGGCACCCUAAGAUAUGUACACGCUGUUUUAAUUAAUUUAUUUAUUUAUCUAUUUAUUUAUUUUUGAGACGCAGUCUCAGUCACCCAGGCUGGAGUGCAGUGGUGUGAUCUCGGCUCACUGCAAUCUCCGCCUCCCGGGUUCAAGCAAUUCUUGUGCCUCAACCUCCCAAGUAGCUGGGGCUACAGGCAUGCACCAC | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPM | 2 | 999 | 0.03571429 | 0.001449204 | 4.623169 | AAGGAA,GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| ACO1 | 1 | 1283 | 0.02380952 | 0.001860778 | 3.677561 | CAGUGG | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| RBM41 | 1 | 1318 | 0.02380952 | 0.001911500 | 3.638762 | UACUUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| NONO | 1 | 1498 | 0.02380952 | 0.002172357 | 3.454206 | AGGAAC | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| ENOX1 | 3 | 3195 | 0.04761905 | 0.004631656 | 3.361939 | AAGACA,AGACAG,UGGACA | AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA |
| ZCRB1 | 1 | 1605 | 0.02380952 | 0.002327422 | 3.354734 | GACUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| FXR2 | 3 | 3434 | 0.04761905 | 0.004978016 | 3.257896 | AGACAG,AGACGG,GACGGG | AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG |
| HNRNPAB | 1 | 1782 | 0.02380952 | 0.002583931 | 3.203900 | AAGACA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| HNRNPA3 | 1 | 2140 | 0.02380952 | 0.003102746 | 2.939921 | GGAGCC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| RBM3 | 1 | 2152 | 0.02380952 | 0.003120136 | 2.931858 | GAGACG | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| RBMX | 3 | 4925 | 0.04761905 | 0.007138779 | 2.737790 | AAGGAA,GAAGGA,UAAGAC | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| QKI | 1 | 2805 | 0.02380952 | 0.004066466 | 2.549691 | ACUUAU | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| ZRANB2 | 1 | 3173 | 0.02380952 | 0.004599773 | 2.371904 | UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| HNRNPA2B1 | 4 | 8607 | 0.05952381 | 0.012474748 | 2.254456 | AAGGAA,AGGAAC,GAAGGA,GGAGCC | AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA |
| HNRNPC | 1 | 3471 | 0.02380952 | 0.005031636 | 2.242439 | GGGUAC | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| FUS | 1 | 3648 | 0.02380952 | 0.005288145 | 2.170705 | UGGUGG | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| TRA2B | 3 | 7329 | 0.04761905 | 0.010622665 | 2.164393 | AAGGAA,AUAAGA,GAAGGA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| SAMD4A | 1 | 3992 | 0.02380952 | 0.005786671 | 2.040733 | CGGGUA | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| LIN28A | 1 | 4315 | 0.02380952 | 0.006254764 | 1.928511 | UGGAGA | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| SRSF9 | 8 | 20254 | 0.10714286 | 0.029353626 | 1.867925 | AGGAAC,GAAGGA,GGAGCC,GGGAGC,GGUGGA,UGAAGC,UGAAGG,UGGUGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| FMR1 | 8 | 20291 | 0.10714286 | 0.029407247 | 1.865292 | AAGGAA,ACUGGG,CUGGGC,GAAGGA,GGCAUA,GGGCAU,UGGCUG | AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU |
| RBM46 | 1 | 4554 | 0.02380952 | 0.006601124 | 1.850755 | AUGAAG | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| RBM5 | 2 | 6879 | 0.03571429 | 0.009970523 | 1.840760 | AAGGAA,GAAGGA | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| SF1 | 1 | 4931 | 0.02380952 | 0.007147474 | 1.736033 | ACUUAU | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
| SFPQ | 8 | 24050 | 0.10714286 | 0.034854804 | 1.620106 | AAGGAA,ACUGGG,AGGAAC,GAAGGA,UGAAGC,UGGAGA,UGGUGG,UUGGUG | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| ELAVL1 | 1 | 5554 | 0.02380952 | 0.008050328 | 1.564419 | UUUGGU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| YTHDC1 | 1 | 5576 | 0.02380952 | 0.008082210 | 1.558717 | GGGUAC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| SRSF10 | 3 | 13860 | 0.04761905 | 0.020087416 | 1.245247 | AAGACA,AAGGAA,GAGACG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SNRPA | 1 | 7380 | 0.02380952 | 0.010696574 | 1.154390 | AGCAGU | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| FXR2 | 2 | 29 | 0.13636364 | 0.001964894 | 6.116864 | AGACGG,GACGGG | AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA |
| RBM3 | 1 | 20 | 0.09090909 | 0.001375426 | 6.046474 | GAGACG | AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU |
| LIN28A | 1 | 35 | 0.09090909 | 0.002357873 | 5.268867 | UGGAGA | AGGAGA,AGGAGU,CGGAGG,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG,UGGAGU |
| SFPQ | 1 | 153 | 0.09090909 | 0.010086455 | 3.172005 | UGGAGA | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| SRSF10 | 1 | 160 | 0.09090909 | 0.010544931 | 3.107875 | GAGACG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF1 | 4 | 625 | 0.22727273 | 0.041000786 | 2.470701 | GACGGG,GAGACG,GGAGAC,UGGAGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 0.031438302 | 1.531901 | UGGAGA | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| ZFP36L2 | 18 | 774 | 0.045238095 | 0.0039046755 | 3.534264 | AUUUAU,UAUUUA,UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| IGF2BP1 | 2 | 173 | 0.007142857 | 0.0008766626 | 3.026408 | AAGCAC,GCACCC | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| HNRNPA0 | 2 | 200 | 0.007142857 | 0.0010126965 | 2.818299 | AAUUUA,AGAUAU | AAUUUA,AGAUAU,AGUAGG |
| HNRNPD | 20 | 1488 | 0.050000000 | 0.0075020153 | 2.736578 | AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAUUU,UUUAUU | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| SNRPB2 | 3 | 288 | 0.009523810 | 0.0014560661 | 2.709463 | AUUGCA,UGCAGU,UUGCAG | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| SSB | 5 | 505 | 0.014285714 | 0.0025493753 | 2.486358 | CUGUUU,GCUGUU,UGCUGU,UGUUUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
| SNRNP70 | 2 | 253 | 0.007142857 | 0.0012797259 | 2.480666 | GUUCAA,UUCAAG | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| ELAVL3 | 21 | 1928 | 0.052380952 | 0.0097188634 | 2.430183 | AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| MATR3 | 1 | 216 | 0.004761905 | 0.0010933091 | 2.122837 | AAUCUU | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| ACO1 | 2 | 325 | 0.007142857 | 0.0016424829 | 2.120623 | CAGUGG | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| ELAVL1 | 27 | 3309 | 0.066666667 | 0.0166767432 | 1.999128 | AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUUUG,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| ELAVL4 | 23 | 2916 | 0.057142857 | 0.0146966949 | 1.959081 | AUUUAU,UAUCUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| HNRNPLL | 5 | 748 | 0.014285714 | 0.0037736800 | 1.920529 | ACUGCA,CACACC,CACCAC,CACUGC,GCACAC | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| AGO1 | 1 | 283 | 0.004761905 | 0.0014308746 | 1.734641 | GAGGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBFOX1 | 1 | 287 | 0.004761905 | 0.0014510278 | 1.714464 | GCAUGC | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| A1CF | 3 | 598 | 0.009523810 | 0.0030179363 | 1.657976 | UAAUUA,UUAAUU | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| RBM41 | 2 | 502 | 0.007142857 | 0.0025342604 | 1.494937 | UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | GCCAAG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| SNRPA | 10 | 1947 | 0.026190476 | 0.0098145909 | 1.416042 | AGCAGU,AGGAGA,AUGCAC,AUUGCA,GUUUCC,UACCUG,UGCACC,UUACCU,UUCCUG,UUUCCU | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
| LIN28A | 4 | 900 | 0.011904762 | 0.0045395002 | 1.390933 | AGGAGA,GGAGAA,UGGAGG,UGGAGU | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| RBM3 | 2 | 541 | 0.007142857 | 0.0027307537 | 1.387202 | GAGACG | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| KHSRP | 30 | 5764 | 0.073809524 | 0.0290457477 | 1.345480 | AUUUAU,CACCCU,CCCCUU,CCCUUC,CCGCCU,CCUUCC,CGCCUC,CUCCUU,GCCUCC,UAUUUA,UAUUUU,UGCCUC,UGCUUC,UUAUUU,UUUAUU | ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU |
| PUM2 | 3 | 764 | 0.009523810 | 0.0038542926 | 1.305073 | GUAAAU,UGUAAA,UGUACA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| SAMD4A | 3 | 790 | 0.009523810 | 0.0039852882 | 1.256855 | CGGGUA,CUGGUC,GCUGGA | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| ELAVL2 | 47 | 9826 | 0.114285714 | 0.0495112858 | 1.206816 | AAUUUA,AUUUAU,AUUUUC,AUUUUU,CAUUUU,CUUUCU,CUUUUA,GUUUUA,GUUUUU,UAAUUU,UAUUUA,UAUUUU,UCAUUU,UUAAUU,UUACUU,UUAUUU,UUCAUU,UUUAAU,UUUACU,UUUAGU,UUUAUU,UUUCUU,UUUUAA,UUUUAG,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| TIA1 | 24 | 5140 | 0.059523810 | 0.0259018541 | 1.200411 | AUUUUC,AUUUUU,CUCCUU,CUUUUA,GUUUUA,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUUAUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| RC3H1 | 2 | 631 | 0.007142857 | 0.0031841999 | 1.165570 | CCCUUC,UCCCUU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| U2AF2 | 4 | 1071 | 0.011904762 | 0.0054010480 | 1.140228 | UUUUCC,UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| RBM4 | 4 | 1094 | 0.011904762 | 0.0055169287 | 1.109602 | CCUUCC,CUUCUU,UUCUUG | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.