ENSG00000196365:-:19:5705771:5714271

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000196365:-:19:5705771:5714271 ENSG00000196365 ENST00000360614 - 19 5705772 5714271 938 GUUAAAAAUAAGAAGUUGGUUGAGCUGCUGAGAAGGAAAGUUCGUCUCGCCCAGCCUUAUGUCGGCGUCUUUCUAAAGAGAGAUGACAGCAAUGAGUCGGAUGUGGUCGAGAGCCUGGAUGAAAUCUACCACACGGGGACGUUUGCCCAGAUCCAUGAGAUGCAGGACCUUGGGGACAAGCUGCGCAUGAUCGUCAUGGGACACAGAAGAGUCCAUAUCAGCAGACAGCUGGAGGUGGAGCCCGAGGAGCCGGAGGCGGAGAACAAGCACAAGCCCCGCAGGAAGUCAAAGCGGGGCAAGAAGGAGGCGGAGGACGAGCUGAGCGCCAGGCACCCGGCGGAGCUGGCGAUGGAGCCCACCCCUGAGCUCCCGGCUGAGGUGCUCAUGGUGGAGGUAGAGAACGUUGUCCACGAGGACUUCCAGGUCACGGAGGAGGUGAAAGCCCUGACUGCAGAGAUCGUGAAGACCAUCCGGGACAUCAUUGCCUUGAACCCUCUCUACAGGGAGUCAGUGCUGCAGAUGAUGCAGGCUGGCCAGCGGGUGGUGGACAACCCCAUCUACCUGAGCGACAUGGGCGCCGCGCUCACCGGGGCCGAGUCCCAUGAGCUGCAGGACGUCCUGGAAGAGACCAAUAUUCCUAAGCGGCUGUACAAGGCCCUCUCCCUGCUGAAGAAGGAAUUUGAACUGAGCAAGCUGCAGCAGCGCCUGGGGCGGGAGGUGGAGGAGAAGAUCAAGCAGACCCACCGUAAGUACCUGCUGCAGGAGCAGCUAAAGAUCAUCAAGAAGGAGCUGGGCCUGGAGAAGGACGACAAGGAUGCCAUCGAGGAGAAGUUCCGGGAGCGCCUGAAGGAGCUCGUGGUCCCCAAGCACGUCAUGGAUGUUGUGGACGAGGAGCUGAGCAAGCUGGGCCUGCUGGACAACCACUCCUCGGAGUUCAAGUUAAAAAUAAGAAGUUGGUUGAGCUGCUGAGAAGGAAAGUUCGUCUCGC circ
ENSG00000196365:-:19:5705771:5714271 ENSG00000196365 ENST00000360614 - 19 5705772 5714271 22 UCGGAGUUCAAGUUAAAAAUAA bsj
ENSG00000196365:-:19:5705771:5714271 ENSG00000196365 ENST00000360614 - 19 5714262 5714471 210 UUAGCCAGGUGUGGUGGUGCAUGCCUGUAAUCCCAGCUACUCAGGAGGCUGAGGCAGGAGAAUCCCUUGAACUCAGUGGGGGUGGAGGUUGCAGUGAGCUGAGAUCACGCCAUUACAUUCCAGCCAGGGCAACAGAAUGAGACUCUGUCUCAAAAAAAAAAUCUACUCUGCAUUUCACUUUGGGGUCAUUGUCAUGCUAGGUUAAAAAUA ie_up
ENSG00000196365:-:19:5705771:5714271 ENSG00000196365 ENST00000360614 - 19 5705572 5705781 210 CGGAGUUCAAGUGAGUGCCAGGCCCGGGGCGGCCCAGCCCUCAGGUGACCCCUCCUCAGCCCCCAUCUUAGGCAGGCCAGGGGACCCAGCGGGGAGCCCCGUGGCACCUUCUUGGUGUGGCAGGUGCGGGCUGGGAGGCAUCCAGCGAGUAUCAGCCCUGUUCUGGGCAGGACACAUCAUCACCAUCUCCAUUCUACAAGGAAAUCGAGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPM 8 999 0.009594883 0.0014492040 2.727005 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
ZC3H10 7 1053 0.008528785 0.0015274610 2.481205 CAGCGC,CCAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
PTBP2 1 267 0.002132196 0.0003883867 2.456775 CUCUCU CUCUCU
AGO1 3 548 0.004264392 0.0007956130 2.422201 AGGUAG,GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
FXR1 2 411 0.003198294 0.0005970720 2.421326 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
SRSF11 4 688 0.005330490 0.0009985015 2.416432 AAGAAG AAGAAG
HNRNPA3 12 2140 0.013859275 0.0031027457 2.159234 AAGGAG,AGGAGC,CAAGGA,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IGF2BP1 4 831 0.005330490 0.0012057377 2.144352 AAGCAC,CACCCG,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ANKHD1 1 339 0.002132196 0.0004927293 2.113473 GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
PPRC1 3 780 0.004264392 0.0011318283 1.913685 CCGCGC,GGCGCC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
SNRNP70 5 1237 0.006396588 0.0017941145 1.834031 AUCAAG,GAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IFIH1 3 904 0.004264392 0.0013115296 1.701090 GCCGCG,GGCCCU,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBFOX2 1 452 0.002132196 0.0006564894 1.699497 UGACUG UGACUG,UGCAUG
LIN28A 18 4315 0.020255864 0.0062547643 1.695312 AGGAGA,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGGA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBMX 18 4925 0.020255864 0.0071387787 1.504590 AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
FXR2 12 3434 0.013859275 0.0049780156 1.477209 AGACAG,GACAAG,GACGAG,GGACAA,GGACGA,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
TRA2B 25 7329 0.027718550 0.0106226650 1.383706 AAGAAG,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAGAA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRP14 2 847 0.003198294 0.0012289250 1.379906 CGCCUG CCUGUA,CGCCUG,CUGUAG,GCCUGU
SRSF9 66 20254 0.071428571 0.0293536261 1.282963 AGGAAA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGGA,GAUGCA,GAUGCC,GAUGGA,GGAAAG,GGACAA,GGAGAA,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGGAGC,GGGAGG,GGGUGG,GGUGGA,UGAAAG,UGAAGG,UGACAG,UGAGAA,UGAGCA,UGAGCG,UGAUGC,UGGAGC,UGGAGG,UGGUGG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
RBM8A 1 611 0.002132196 0.0008869128 1.265476 CGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
HNRNPA2B1 27 8607 0.029850746 0.0124747476 1.258756 AAGAAG,AAGGAA,AAGGAG,AGGAGC,CAAGAA,CAAGGA,GAAGGA,GGAGCC,GGGGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
MSI1 7 2770 0.008528785 0.0040157442 1.086673 AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUUGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ZNF638 4 1773 0.005330490 0.0025708878 1.052002 CGUUGU,GUUCGU,GUUGGU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBFOX1 2 1077 0.003198294 0.0015622419 1.033685 GCAUGA,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SAMD4A 10 3992 0.011727079 0.0057866714 1.019038 CGGGAC,CUGGAA,CUGGAC,CUGGCC,GCGGGA,GCGGGU,GCUGGA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRNP70 1 7 0.09090909 0.0005239717 7.438792 UUCAAG AAUCAA,AUUCAA,GUUCAA,UUCAAG
DAZAP1 1 36 0.09090909 0.0024233691 5.229338 AGUUAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
SRSF1 1 625 0.09090909 0.0410007860 1.148773 UUCAAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZC3H10 3 140 0.009523810 0.0007103990 3.744837 CAGCGA,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
IGHMBP2 5 350 0.014285714 0.0017684401 3.014024 AAAAAA AAAAAA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
PABPC4 5 462 0.014285714 0.0023327287 2.614483 AAAAAA AAAAAA,AAAAAG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
AGO2 5 677 0.014285714 0.0034159613 2.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CAAGGA,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
QKI 5 904 0.014285714 0.0045596534 1.647577 AUCUAC,CUACUC,UACUCA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CELF4 4 776 0.011904762 0.0039147521 1.604546 GGUGUG,GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
CELF6 6 1196 0.016666667 0.0060308343 1.466536 GUGGGG,GUGGUG,GUGUGG,UGUGGU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
SYNCRIP 5 1041 0.014285714 0.0052498992 1.444212 AAAAAA AAAAAA,UUUUUU
NOVA2 7 1434 0.019047619 0.0072299476 1.397554 AGAUCA,AGGCAU,AUCACC,AUCAUC,GAGGCA,GAUCAC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 AGGAGA,CGGAGU,GGAGAA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPU 5 1136 0.014285714 0.0057285369 1.318335 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
FUS 8 1711 0.021428571 0.0086255542 1.312847 AAAAAA,GGGUGG,UGGUGG,UGGUGU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZRANB2 6 1360 0.016666667 0.0068571141 1.281292 AGGUUA,GAGGUU,GGUGGU,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCUUCU,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
YBX1 5 1321 0.014285714 0.0066606207 1.100845 ACAUCA,AUCAUC,CAUCAU,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
RBM24 3 888 0.009523810 0.0044790407 1.088349 GUGUGG,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
G3BP1 14 3431 0.035714286 0.0172914148 1.046445 ACCCCU,AGGCAG,AGGCCC,CACGCC,CAGGCC,CCAGGC,CCCAUC,CCCCCA,CCCCUC,CCCUCC,CGGCCC,UAGGCA ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home