ENSG00000196739:+:9:114162714:114183075

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000196739:+:9:114162714:114183075 ENSG00000196739 ENST00000356083 + 9 114162715 114183075 1954 GGGGUUUCUCUUCUCCUGGAUCUUAGUCUCGUUUGCCUGUCACCUGGCCUCCACCCAAGGAGCUCCUGAAGAUGUGGACAUCCUCCAGCGGCUGGGCCUCAGCUGGACGAAGGCCGGGAGCCCUGCACCCCCGGGAGUCAUUCCUUUCCAGUCGGGCUUCAUCUUUACGCAGCGGGCCCGGCUCCAGGCUCCCACGGGCACCGUCAUUCCUGCCGCCUUGGGCACAGAGCUGGCACUGGUGCUGAGCCUCUGCUCCCACCGGGUGAACCAUGCCUUCCUCUUCGCUGUCCGCAGCCAGAAACGCAAGCUGCAGCUGGGCCUGCAGUUCCUCCCCGGCAAGACGGUCGUCCACCUCGGGUCCCGGCGCUCAGUGGCCUUCGACCUCGACAUGCACGACGGGCGCUGGCACCACCUGGCCCUCGAGCUCCGAGGCCGCACAGUCACUCUGGUGACUGCCUGCGGGCAGCGCCGGGUGCCUGUCCUGCUGCCUUUCCACAGGGACCCUGCACUCGACCCUGGGGGCUCCUUCCUCUUUGGGAAGAUGAACCCGCAUGCAGUCCAGUUUGAAGGUGCUCUCUGCCAGUUCAGUAUCUACCCUGUGACGCAGGUCGCUCACAAUUACUGUACCCACCUGAGGAAGCAGUGUGGACAGGCUGACACGUACCAGUCCCCACUGGGACCUCUCUUCUCCCAAGACUCUGGCAGACCUUUUACCUUCCAGUCCGACCUCGCCCUGCUAGGCCUGGAGAACUUGACCACUGCCACACCAGCCCUGGGGUCACUGCCAGCAGGCAGGGGACCCAGGGGGACUGUGGCACCCGCCACGCCCACCAAGCCCCAAAGGACUAGCCCCACAAACCCUCACCAGCAUAUGGCGGUGGGAGGCCCAGCCCAAACCCCGCUGCUACCUGCCAAGCUGUCAGCCAGUAACGCACUUGAUCCCAUGCUCCCAGCCUCUGUUGGCGGCUCUACCAGAACGCCUCGCCCUGCGGCCGCUCAACCAUCACAGAAGAUCACAGCCACCAAAAUCCCCAAAAGCCUCCCUACCAAGCCUUCGGCCCCUUCUACUUCAAUUGUGCCCAUCAAAAGCCCCCAUCCUACCCAGAAAACAGCUCCAUCUUCAUUUACAAAGUCAGCCCUACCCACUCAGAAGCAAGUGCCACCUACUUCCCGUCCAGUUCCUGCCAGAGUCUCCCGUCCCGCAGAGAAGCCCAUCCAGAGGAACCCGGGAAUGCCCAGGCCCCCACCGCCCAGCACCCGGCCCCUACCUCCUACCACCAGCUCCUCUAAAAAACCCAUUCCCACACUAGCUCGGACUGAGGCCAAGAUAACCAGCCAUGCCAGUAAGCCGGCCUCUGCCCGCACCAGCACCCACAAACCUCCCCCAUUUACUGCUUUAUCCUCAUCUCCUGCCCCUACUCCUGGUUCUACCAGGAGUACUCGGCCACCAGCCACGAUGGUACCUCCAACUUCGGGCACCAGCACUCCCAGAACAGCACCUGCCGUCCCCACUCCUGGCUCAGCUCCCACUGGAAGCAAGAAGCCCAUUGGAUCGGAAGCCUCAAAGAAAGCCGGACCCAAGAGCAGCCCCCGGAAGCCUGUCCCCCUCAGACCUGGGAAGGCAGCCAGGGAUGUCCCCUUGAGCGAUCUGACAACCAGGCCUAGCCCCAGACAGCCCCAGCCCAGUCAGCAGACCACCCCGGCCCUGGUAUUGGCCCCGGCGCAAUUCCUGUCCUCCAGCCCCCGGCCCACGAGCAGUGGCUAUUCGAUCUUCCACCUGGCAGGAUCUACGCCUUUCCCUCUGCUGAUGGGGCCUCCGGGACCCAAGGGAGACUGUGGCUUGCCGGGUCCCCCUGGGCUACCUGGGCUACCUGGAAUCCCUGGUGCACGUGGGCCUCGGGGUCCUCCUGGGCCUUAUGGAAAUCCAGGUCUCCCCGGCCCUCCUGGAGCCAAAGGGGUUUCUCUUCUCCUGGAUCUUAGUCUCGUUUGCCUGUCACCUGGCCU circ
ENSG00000196739:+:9:114162714:114183075 ENSG00000196739 ENST00000356083 + 9 114162715 114183075 22 CUGGAGCCAAAGGGGUUUCUCU bsj
ENSG00000196739:+:9:114162714:114183075 ENSG00000196739 ENST00000356083 + 9 114162515 114162724 210 ACUGAGAGGCUGUGCCUGGAGGCCGGGAAGAGUGGGCUGCUGCUCUGAUGGGGUCCUAGAGCCUGUACCUGGCCUCCUGCCUCCCGUGGGCAGGACUGGGGUGAGACUGGGACUGGUUUCCACUCCCAGCUUCCCCAGCCGGAUCCGGGUGUGAGGGGUGGAAGCUGAUGCCGCCUCUGCUUGUGUCUCCUGGUCUCUAGGGGGUUUCUC ie_up
ENSG00000196739:+:9:114162714:114183075 ENSG00000196739 ENST00000356083 + 9 114183066 114183275 210 UGGAGCCAAAGUGAGUAUUUGCUGGAGAUGUGGCCAUGGAGUGGGUGCUGGGGUUGGAGCCAUGUUUGCAGUGCUUCCCAGGGGUGCCUGGUGGGAGGGCUUCAGGGGAACUGAGGGGGAUUCCCGCCUAAGCCAGGGGCACCCUCUGGGCCCCUUUCCAGGGCUGGGCCCUGUGCCUGGUCCGGAGACACAGUGCUUCCGUCUGGGAGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 5 268 0.003070624 0.0003898359 2.977593 CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
ESRP1 1 156 0.001023541 0.0002275250 2.169472 AGGGAU AGGGAU
IGF2BP1 9 831 0.005117707 0.0012057377 2.085582 AGCACC,CACCCG,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PTBP2 2 267 0.001535312 0.0003883867 1.982966 CUCUCU CUCUCU
SUPV3L1 1 199 0.001023541 0.0002898408 1.820237 CCGCCC CCGCCC
G3BP1 123 14282 0.063459570 0.0206989801 1.616278 ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCGC,ACGCAC,ACGCAG,ACGCCC,AGGCAG,AGGCCC,AGGCCG,CACAGG,CACCCG,CACCGG,CACGCC,CAGGCA,CAGGCC,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUCC,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGGCA,CCGGCC,CCUCCG,CCUCGG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCGGC,UACGCA,UACGCC,UAGGCC,UCCGCA,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
IFIH1 5 904 0.003070624 0.0013115296 1.227282 GGCCCU,GGCCGC CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
HNRNPK 59 9304 0.030706244 0.0134848428 1.187193 AAAAAA,ACCCAA,ACCCAU,ACCCCC,ACCCGC,CAAACC,CCAAAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCUA AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
RBMY1A1 2 489 0.001535312 0.0007101099 1.112418 CAAGAC ACAAGA,CAAGAC
SAMD4A 23 3992 0.012282497 0.0057866714 1.085798 CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,GCGGGC,GCUGGA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
ANKHD1 1 339 0.001023541 0.0004927293 1.054702 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ZC3H10 5 1053 0.003070624 0.0015274610 1.007397 CAGCGC,CCAGCG,GAGCGA,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA2B1 1 49 0.09090909 0.003274823 4.794936 AAGGGG AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
RBM5 1 56 0.09090909 0.003733298 4.605902 AAGGGG AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPH2 1 80 0.09090909 0.005305214 4.098942 AAGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPF 1 90 0.09090909 0.005960178 3.930997 AAGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 AAGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SRSF10 2 160 0.13636364 0.010544931 3.692837 AAAGGG,AAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
AGO2 5 677 0.014285714 0.0034159613 2.064210 AAAGUG,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
LIN28A 6 900 0.016666667 0.0045395002 1.876360 CGGAGA,GGAGAU,GGAGGG,UGGAGA,UGGAGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
SAMD4A 5 790 0.014285714 0.0039852882 1.841817 CGGGAA,CUGGCC,CUGGUC,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPH2 19 3198 0.047619048 0.0161174929 1.562911 AGGGGA,AUGUGG,CAGGAC,CUGGGG,GAGGGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAA,GGGGGA,GGGUGU,UGGGGU,UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
MBNL1 19 3258 0.047619048 0.0164197904 1.536103 AUGCCG,CUGCCU,CUGCUC,CUGCUG,CUGCUU,CUUGUG,GCUGCU,GCUUGU,GUGCUG,GUGCUU,UCUGCU,UGCUGC,UGCUUC,UGUCUC,UUGCUG,UUUGCU ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
RBM24 4 888 0.011904762 0.0044790407 1.410277 AGAGUG,GAGUGG,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
YTHDC1 6 1254 0.016666667 0.0063230552 1.398272 GGCUGC,GGGUGC,UCCUGC,UGAUGC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
HNRNPH1 18 3406 0.045238095 0.0171654575 1.398030 AGGGGA,AUGUGG,CAGGAC,CUGGGG,GAGGGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAA,GGGUGU,UGGGGU,UGGGUG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAG,GGGGAA,GGGGAU GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPF 17 3360 0.042857143 0.0169336961 1.339639 AGGGGA,AUGGGG,AUGUGG,CUGGGG,GAGGGG,GAUGGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAA,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH3 11 2496 0.028571429 0.0125806127 1.183371 AGGGGA,AUGUGG,GAGGGG,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGUGU,UGGGUG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUCUGG,CUGGUU,GGUCUC,GUCUCU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SFPQ 30 7087 0.073809524 0.0357114067 1.047422 ACUGGG,AGGGGG,CUGGAG,CUGGGA,GAAGAG,GACUGG,GAGAGG,GGAAGA,GGACUG,GGAGGG,GGGGAU,GGGGGA,GUCUGG,UAGGGG,UGAUGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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