ENSG00000138814:-:4:101195915:101196116

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000138814:-:4:101195915:101196116 ENSG00000138814 ENST00000394854 - 4 101195916 101196116 201 CUGUUCCAUUUCCUCCAAGUCACCGGCUUACAGCAAAAGAAGUGUUUGAUAAUGAUGGAAAACCUCGUGUGGAUAUCUUAAAGGCGCAUCUUAUGAAGGAGGGAAGGCUGGAAGAGAGUGUUGCAUUGAGAAUAAUAACAGAGGGUGCAUCAAUUCUUCGACAGGAAAAAAAUUUGCUGGAUAUUGAUGCGCCAGUCACUGCUGUUCCAUUUCCUCCAAGUCACCGGCUUACAGCAAAAGAAGUGUUUGAU circ
ENSG00000138814:-:4:101195915:101196116 ENSG00000138814 ENST00000394854 - 4 101195916 101196116 22 GCCAGUCACUGCUGUUCCAUUU bsj
ENSG00000138814:-:4:101195915:101196116 ENSG00000138814 ENST00000394854 - 4 101196107 101196316 210 GCAAUCACAUUAUAUCUAGAAUCAAAGGAAGGAUGCAGUUCUUAAUUUUUGAUAGAUAGCCCUUGAUCAUAUUUUAAUUCAGCCACUCUAAAAAUAUUAUAUUAGUUGGUUUGUGAUGAGGAUGGAUAUUUGGUGGUUAUUAUUGCAUUGUUUGUUGUUGAGUUUUGGCUAAUGUAAUAAUUAGACCUUUCUUCUUUCAGCUGUUCCAUU ie_up
ENSG00000138814:-:4:101195915:101196116 ENSG00000138814 ENST00000394854 - 4 101195716 101195925 210 CCAGUCACUGGUAAGUCCUGAGGAGGGAGGUUGCCCACUUGUAUACACAUUUUGUUGUUUAUAGCAUGAAAUCAAAAGUCCUAGUUACCAGUGAGUCUUCAAAUACCUUACCCAUCAUAAUCUUUUACUGUUGAAUCUAUACAUUAGAGUAGUAAGUAUAUUAUACAUAUAUACACAUAUUUUCAUGUGUUAAAUAUCUGUAAGAUUGCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 3 739 0.019900498 0.0010724109 4.213875 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM8A 2 611 0.014925373 0.0008869128 4.072831 AUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
IGHMBP2 2 813 0.014925373 0.0011796520 3.661334 AAAAAA AAAAAA
SRSF11 1 688 0.009950249 0.0009985015 3.316896 AAGAAG AAGAAG
CELF5 3 1415 0.019900498 0.0020520728 3.277651 GUGUGG,GUGUUG,GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPC3 2 1234 0.014925373 0.0017897669 3.059923 AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC4 2 1251 0.014925373 0.0018144033 3.040200 AAAAAA AAAAAA,AAAAAG
SSB 2 1260 0.014925373 0.0018274462 3.029866 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CELF4 3 1782 0.019900498 0.0025839306 2.945165 GUGUGG,GUGUUG,GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 3 1967 0.019900498 0.0028520334 2.802742 GUGUUG,GUGUUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPM 1 999 0.009950249 0.0014492040 2.779472 GAAGGA AAGGAA,GAAGGA,GGGGGG
SART3 4 2634 0.024875622 0.0038186524 2.703597 AAAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SYNCRIP 2 1634 0.014925373 0.0023694485 2.655144 AAAAAA AAAAAA,UUUUUU
RBM24 3 2357 0.019900498 0.0034172229 2.541908 AGAGUG,GAGUGU,GUGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
AGO2 2 1830 0.014925373 0.0026534924 2.491803 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPN1 1 1222 0.009950249 0.0017723764 2.489048 AAAAGA AAAAGA,AGAAGA
HNRNPU 2 1965 0.014925373 0.0028491350 2.389171 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBMX 6 4925 0.034825871 0.0071387787 2.286410 AAGAAG,AAGUGU,AGUGUU,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
RBM5 8 6879 0.044776119 0.0099705232 2.166988 AAAAAA,AAGGAG,AGGGAA,AGGGUG,GAAGGA,GAGGGA,GAGGGU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
CELF1 2 2391 0.014925373 0.0034664959 2.106217 GUGUUG,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ZCRB1 1 1605 0.009950249 0.0023274215 2.096000 GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PABPC1 4 4443 0.024875622 0.0064402624 1.949541 AAAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM46 4 4554 0.024875622 0.0066011240 1.913949 AAUGAU,AUCAAU,AUGAAG,AUGAUG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
FUS 3 3648 0.019900498 0.0052881452 1.911971 AAAAAA,GGGUGC AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPD 2 2837 0.014925373 0.0041128408 1.859560 AAAAAA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
NOVA1 3 3872 0.019900498 0.0056127669 1.826020 AGUCAC,CAGUCA AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SAMD4A 3 3992 0.019900498 0.0057866714 1.781999 CUGGAA,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
CELF6 2 2997 0.014925373 0.0043447134 1.780434 GUGUGG,GUGUUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
ZRANB2 2 3173 0.014925373 0.0045997733 1.698132 AGGGAA,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPA3 1 2140 0.009950249 0.0031027457 1.681187 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 1 2150 0.009950249 0.0031172377 1.674464 GGGAAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPC 2 3471 0.014925373 0.0050316361 1.568668 GGAUAU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TRA2B 5 7329 0.029850746 0.0106226650 1.490621 AAAGAA,AAGAAG,AGGAAA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF4 2 3740 0.014925373 0.0054214720 1.461010 AAGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SRSF5 6 8869 0.034825871 0.0128544391 1.437893 AAGAAG,CGCAUC,GGAAGA,UAAAGG,UACAGC,UGCAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SRSF9 14 20254 0.074626866 0.0293536261 1.346156 AGGAAA,CUGGAU,GAAGGA,GAAGGC,GAUGGA,GGAAAA,GGAAGG,GGGUGC,GGUGCA,UGAAGG,UGAGAA,UGAUGC,UGAUGG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
MSI1 1 2770 0.009950249 0.0040157442 1.309065 AGGAGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
DAZAP1 3 5964 0.019900498 0.0086445016 1.202950 AAAAAA,AGGAAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
HNRNPH3 4 7688 0.024875622 0.0111429292 1.158604 AGGGAA,GGAAGG,GGAGGG,GGGAAG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
SRSF10 8 13860 0.044776119 0.0200874160 1.156438 AAAAGA,AAAGAA,AAGAAG,AAGAGA,AAGGAG,AGAGAG,AGAGGG,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPH2 5 9711 0.029850746 0.0140746688 1.084666 AAGGCG,AGGGAA,GGAAGG,GGAGGG,GGGAAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
SRSF3 9 16536 0.049751244 0.0239654858 1.053774 CAUCAA,CCUCGU,CUCCAA,CUUCGA,UACAGC,UCGACA,UCUUCG,UUCGAC,UUCUUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
ELAVL4 2 5105 0.014925373 0.0073996354 1.012241 AAAAAA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SSB 2 5 0.13636364 0.0003929788 8.438792 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU
HNRNPLL 1 9 0.09090909 0.0006549646 7.116864 CACUGC ACAAAC,ACACCA,ACAUAC,ACGACA,CACCAC,CAGACG,CAUACA,GACGAC
MBNL1 2 36 0.13636364 0.0024233691 5.814301 CUGCUG,UGCUGU AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUG,CCUGCU,CGCUGC,CGCUGU,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUU,CUUGCU,GCUUGC,GCUUGU,GGCUUU,GUGCUG,UGCGGC,UGCUGC,UGCUGU,UGCUUU,UUGCCU,UUGCUC,UUGCUG,UUGCUU,UUGUGC
SRSF2 2 479 0.13636364 0.0314383023 2.116864 GCUGUU,UGCUGU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRPB2 4 288 0.011904762 0.001456066 3.031391 AUUGCA,UAUUGC,UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMS1 2 217 0.007142857 0.001098347 2.701167 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 2 221 0.007142857 0.001118501 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPM 2 222 0.007142857 0.001123539 2.668451 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
SNRNP70 2 253 0.007142857 0.001279726 2.480666 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
A1CF 6 598 0.016666667 0.003017936 2.465331 AGUAUA,AUAAUU,UAAUUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZNF638 6 646 0.016666667 0.003259774 2.354122 GUUCUU,GUUGGU,GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBMS3 5 562 0.014285714 0.002836558 2.332360 AUAUAU,CAUAUA,UAUAGC,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBFOX1 2 287 0.007142857 0.001451028 2.299426 AGCAUG,GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
MATR3 1 216 0.004761905 0.001093309 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PUM2 6 764 0.016666667 0.003854293 2.112428 GUAUAU,UAAAUA,UACAUA,UAGAUA,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBM28 2 340 0.007142857 0.001718057 2.055723 AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 1 228 0.004761905 0.001153769 2.045185 UUUCAG UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.001163845 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
MSI1 7 961 0.019047619 0.004846836 1.974496 AGGAAG,AGGAGG,AGUAAG,AGUUGG,UAGUAA,UAGUUA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
RBM46 8 1091 0.021428571 0.005501814 1.961556 AAUCAA,AUCAAA,AUCAUA,AUGAAA,GAUCAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
G3BP2 3 490 0.009523810 0.002473801 1.944809 AGGAUG,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM41 3 502 0.009523810 0.002534260 1.909974 AUACAU,UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO1 1 283 0.004761905 0.001430875 1.734641 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CELF2 5 881 0.014285714 0.004443773 1.684716 AUGUGU,GUUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ENOX1 4 756 0.011904762 0.003813986 1.642167 UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
CELF1 6 1097 0.016666667 0.005532044 1.591081 GUUUGU,UGUGUU,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ACO1 1 325 0.004761905 0.001642483 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMX 7 1316 0.019047619 0.006635429 1.521349 AAGGAA,AGGAAG,AUCAAA,GAAGGA,GGAAGG,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PUM1 12 2172 0.030952381 0.010948206 1.499356 AAUAUU,CUUGUA,GUAAUA,GUAUAU,UAAAUA,UAAUGU,UACAUA,UAGAUA,UAUAUA,UGUAAU,UGUAUA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPAB 1 351 0.004761905 0.001773478 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PPIE 43 9262 0.104761905 0.046669690 1.166556 AAAAAU,AAAAUA,AAAUAU,AAUAAU,AAUAUU,AAUUUU,AUAAUU,AUAUAU,AUAUUA,AUAUUU,AUUAUA,AUUAUU,AUUUUA,AUUUUU,UAAAAA,UAAAUA,UAAUAA,UAAUUA,UAAUUU,UAUAUA,UAUAUU,UAUUAU,UAUUUU,UUAAAU,UUAAUU,UUAUAU,UUAUUA,UUUAAU,UUUAUA,UUUUAA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
QKI 3 904 0.009523810 0.004559653 1.062615 AUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ELAVL2 41 9826 0.100000000 0.049511286 1.014171 AAUUUU,AUAUUU,AUUAUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUCU,CUUUUA,UAAUUU,UAGUUA,UAUAUA,UAUAUU,UAUUAU,UAUUUG,UAUUUU,UCUUUU,UUAAUU,UUAGUU,UUAUAC,UUAUAU,UUAUUG,UUCUUU,UUGUAU,UUUAAU,UUUACU,UUUAUA,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUUG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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