ENSG00000075223:-:7:80789305:80828745

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000075223:-:7:80789305:80828745 ENSG00000075223 ENST00000265361 - 7 80789306 80828745 1251 AACUUCGAGAAACCAAGACCUCUGAAUACUUCAGCCUUUCCCACCAUCCUUUAGACUACAGGAUUUUAUUAAUGGAUGAAGAUCAGGACCGGAUAUAUGUGGGAAGCAAAGAUCACAUUCUUUCCCUGAAUAUUAACAAUAUAAGUCAAGAAGCUUUGAGUGUUUUCUGGCCAGCAUCUACAAUCAAAGUUGAAGAAUGCAAAAUGGCUGGCAAAGAUCCCACACACGGCUGUGGGAACUUUGUCCGUGUAAUUCAGACUUUCAAUCGCACACAUUUGUAUGUCUGUGGGAGUGGCGCUUUCAGUCCUGUCUGUACUUACUUGAACAGAGGGAGGAGAUCAGAGGACCAAGUUUUCAUGAUUGACUCCAAGUGUGAAUCUGGAAAAGGACGCUGCUCUUUCAACCCCAACGUGAACACGGUGUCUGUUAUGAUCAAUGAGGAGCUUUUCUCUGGAAUGUAUAUAGAUUUCAUGGGGACAGAUGCUGCUAUUUUUCGAAGUUUAACCAAGAGGAAUGCGGUCAGAACUGAUCAACAUAAUUCCAAAUGGCUAAGUGAACCUAUGUUUGUAGAUGCACAUGUCAUCCCAGAUGGUACUGAUCCAAAUGAUGCUAAGGUGUACUUCUUCUUCAAAGAAAAACUGACUGACAAUAACAGGAGCACGAAACAGAUUCAUUCCAUGAUUGCUCGAAUAUGUCCUAAUGACACUGGUGGACUGCGUAGCCUUGUCAACAAGUGGACCACUUUCUUAAAGGCGAGGCUGGUGUGCUCGGUAACAGAUGAAGACGGCCCAGAAACACACUUUGAUGAAUUAGAGGAUGUGUUUCUGCUGGAAACUGAUAACCCGAGGACAACACUAGUGUAUGGCAUUUUUACAACAUCAAGCUCAGUUUUCAAAGGAUCAGCCGUGUGUGUGUAUCAUUUAUCUGAUAUACAGACUGUGUUUAAUGGGCCUUUUGCCCACAAAGAAGGGCCCAAUCAUCAGCUGAUUUCCUAUCAGGGCAGAAUUCCAUAUCCUCGCCCUGGAACUUGUCCAGGAGGAGCAUUUACACCCAAUAUGCGAACCACCAAGGAGUUCCCAGAUGAUGUUGUCACUUUUAUUCGGAACCAUCCUCUCAUGUACAAUUCCAUCUACCCAAUCCACAAAAGGCCUUUGAUUGUUCGUAUUGGCACUGACUACAAGUAUACAAAGAUAGCUGUGGAUCGAGUGAACGCUGCUGAUGGGAGAUACCAUGUCCUGUUUCUCGGAACAGAACUUCGAGAAACCAAGACCUCUGAAUACUUCAGCCUUUCCCACCAUCCU circ
ENSG00000075223:-:7:80789305:80828745 ENSG00000075223 ENST00000265361 - 7 80789306 80828745 22 UCUCGGAACAGAACUUCGAGAA bsj
ENSG00000075223:-:7:80789305:80828745 ENSG00000075223 ENST00000265361 - 7 80828736 80828945 210 GGUGACCAUCAUACCUUUGCCUCCCAAAGUGCUGAGAUUACAGGGAACUAGCCCAUAACUCUAUUUUAAAAUUAAUUUCUUACUGUAGAAGAAAAUGUACCUUGACAUUUUUUGGAAUAUUUGCAUAAUAGUUUUUAUUAAAAUAAUAGAAUUAUAGAACCAGGAUACUGUAUCUACACUUGUGCUGUUCACUCUUUCAGAACUUCGAGA ie_up
ENSG00000075223:-:7:80789305:80828745 ENSG00000075223 ENST00000265361 - 7 80789106 80789315 210 CUCGGAACAGGUAAAUAUUUGAGCCCAAGAUAUGCUUUAAUGUGUAGUAAAAGAAUGUACUAAAUAUAGGUAGUAGGUAAGGGCCAUGAUCUUGAAACUAGAAAAACUCCAAUAAUUACGUCUGUCUAGCCCUUAGUGAGAUAUUUAAUCUCUUUUUGCCUCAGUUUCACAUCUGUAAAAUGAAGCUAAUAAAGUAAAUUAUAGAGUUCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMS1 5 497 0.004796163 0.0007217036 2.732402 AUAUAC,AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
CELF5 10 1415 0.008792966 0.0020520728 2.099268 GUGUGU,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF2 13 1886 0.011191047 0.0027346479 2.032918 AUGUGU,GUAUGU,GUCUGU,GUGUGU,UAUGUG,UAUGUU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
AKAP1 2 426 0.002398082 0.0006188101 1.954312 AUAUAU,UAUAUA AUAUAU,UAUAUA
CELF4 11 1782 0.009592326 0.0025839306 1.892313 GGUGUG,GUGUGU,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 12 1967 0.010391687 0.0028520334 1.865367 GUGUGU,GUGUUU,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CNOT4 1 314 0.001598721 0.0004564992 1.808234 GACAGA GACAGA
CELF1 14 2391 0.011990408 0.0034664959 1.790331 CUGUCU,GUGUGU,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBM24 11 2357 0.009592326 0.0034172229 1.489056 AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
A1CF 7 1642 0.006394884 0.0023810421 1.425325 AGUAUA,AUAAUU,GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
FXR1 1 411 0.001598721 0.0005970720 1.420941 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
ERI1 2 632 0.002398082 0.0009173461 1.386343 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBMS3 5 1283 0.004796163 0.0018607779 1.365975 AAUAUA,AUAUAG,AUAUAU,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM46 20 4554 0.016786571 0.0066011240 1.346524 AAUCAA,AAUCAU,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUU,AUGAAG,AUGAAU,AUGAUG,AUGAUU,GAUCAA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPAB 7 1782 0.006394884 0.0025839306 1.307351 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
TUT1 2 678 0.002398082 0.0009840095 1.285137 AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBFOX2 1 452 0.001598721 0.0006564894 1.284075 UGACUG UGACUG,UGCAUG
SRSF11 2 688 0.002398082 0.0009985015 1.264044 AAGAAG AAGAAG
RBMY1A1 1 489 0.001598721 0.0007101099 1.170804 CAAGAC ACAAGA,CAAGAC
SNRNP70 4 1237 0.003996803 0.0017941145 1.155574 AAUCAA,AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
TARDBP 9 2654 0.007993605 0.0038476365 1.054874 GAAUGU,GUGAAU,GUGUGU,UGUGUG,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PUM2 6 1890 0.005595524 0.0027404447 1.029863 GUAGAU,GUAUAU,UAUAUA,UGUACA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF1 2 625 0.1363636 0.04100079 1.733736 ACAGAA,CAGAAC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
HNRNPA0 3 200 0.009523810 0.0010126965 3.233337 AGAUAU,AGUAGG AAUUUA,AGAUAU,AGUAGG
EIF4B 3 226 0.009523810 0.0011436921 3.057840 CUCGGA,UCGGAA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
AGO1 4 283 0.011904762 0.0014308746 3.056570 AGGUAG,GGUAGU,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM28 4 340 0.011904762 0.0017180572 2.792689 AGUAGG,GUGUAG,UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAAACU,AAACUA,GAAACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAAAU,UAAAUA,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TUT1 1 230 0.004761905 0.0011638452 2.032640 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAGUG,AAGUGC,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
MSI1 6 961 0.016666667 0.0048468360 1.781850 AGGUAG,AGUAGG,UAGGUA,UAGUAA,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,AGAAUU,GUAAAU,UAAAUA,UAAUGU,UGUAAA,UGUAGA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 AAUUAA,AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PPIE 53 9262 0.128571429 0.0466696896 1.462012 AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AUAAUA,AUAAUU,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUUAA,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUUA,UAAUUU,UAUUAA,UAUUUA,UAUUUU,UUAAAA,UUAAUU,UUAUUA,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
DAZAP1 14 2878 0.035714286 0.0145052398 1.299927 AGAUAU,AGGAUA,AGGUAA,AGGUAG,AGUAAA,AGUAGG,UAGGUA,UAGUAA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAAUAA,AAUAAA,AUAAAG,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 AAAAAC,AGAAAA,CUAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AGAAGA,AUAAAG,CACAUC,GAAGAA,UACGUC,UGCAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AAGAAA,AGAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AGGGAA,AGGUAA,AGGUAG,GGUAAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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