ENSG00000155903:+:3:141512162:141540609

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000155903:+:3:141512162:141540609 ENSG00000155903 MSTRG.23817.1 + 3 141512163 141540609 394 GUGAAGCAAAAAAUUUAUUGCCAUAUCUUGGACCCCACAAAAUGAGAGAUUGUUUCUGUACCAUAAAUUUGGACCAGGAAGAAGUUUAUCGUACCCAAGUUGUGGAAAAAUCUUUAAGCCCAUUUUUCAGUGAAGAAUUUUACUUUGAGAUUCCAAGAACUUUCCAGUAUUUGUCUUUCUAUGUUUAUGAUAAGAAUGUUUUACAAAGAGAUCUCCGUAUAGGAAAAGUAGCCAUCAAAAAAGAAGACUUGUGUAAUCACAGUGGCAAAGAAACUUGGUUUUCAUUACAGCCUGUUGACUCCAAUUCAGAGGUUCAGGGUAAAGUUCACCUUGAAUUAAAACUGAAUGAACUGAUAACGGAGAAUGGAACUGUAUGCCAGCAGCUUGUUGUACAGUGAAGCAAAAAAUUUAUUGCCAUAUCUUGGACCCCACAAAAUGAGAGAU circ
ENSG00000155903:+:3:141512162:141540609 ENSG00000155903 MSTRG.23817.1 + 3 141512163 141540609 22 CUUGUUGUACAGUGAAGCAAAA bsj
ENSG00000155903:+:3:141512162:141540609 ENSG00000155903 MSTRG.23817.1 + 3 141511963 141512172 210 UCAAGCCACUUUACACACAGCCCCUCCCUUCAGUCUUAACAAUCUCCUUUAGACCAGCUUGAUCUUUCUGUAAUCACUAGUGUUUUUUUUUUUUUCUGUGCCACAUUAAUAUGUUCUUUCAGAUUGAAGUCAUCCUAUAUAAGGCUUAGUAUGAAGCAGUUGAUGAUAUUUAAUAACAAUUUUAAAUUUUAUGCCAACAGGUGAAGCAAA ie_up
ENSG00000155903:+:3:141512162:141540609 ENSG00000155903 MSTRG.23817.1 + 3 141540600 141540809 210 UUGUUGUACAGUAAGCAUUUUUUUUAACCAAAAUCAACUAGAAAUAAUUCUCCAUUUUGUAUUCUUUCGAUUUUAAGCCAACUCCUUGUUUUAACUUCAGAAACUUUUUUCAAAAAUGAAAUUCUGCUAUGUCAUUCCUUUUGUGAAGUUGAUUUUCAAUUUAAUUUUCUCAUAGUCUACUCAGGUUAUGGUGAGUCAUUAAUUUAUUCA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 2 632 0.007614213 0.0009173461 3.053157 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPA0 1 453 0.005076142 0.0006579386 2.947708 AAUUUA AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.007614213 0.0009985015 2.930858 AAGAAG AAGAAG
MATR3 2 739 0.007614213 0.0010724109 2.827837 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGHMBP2 2 813 0.007614213 0.0011796520 2.690334 AAAAAA AAAAAA
EIF4B 3 1179 0.010152284 0.0017100607 2.569685 CUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC4 3 1251 0.010152284 0.0018144033 2.484237 AAAAAA,AAAAAG AAAAAA,AAAAAG
ACO1 3 1283 0.010152284 0.0018607779 2.447827 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
PABPN1 2 1222 0.007614213 0.0017723764 2.103010 AAAAGA,AGAAGA AAAAGA,AGAAGA
SRP14 1 847 0.005076142 0.0012289250 2.046336 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ZFP36L2 2 1277 0.007614213 0.0018520827 2.039546 AUUUAU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM41 2 1318 0.007614213 0.0019115000 1.993990 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 5 2654 0.015228426 0.0038476365 1.984722 GAAUGA,GAAUGG,GAAUGU,GUUGUG,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPAB 3 1782 0.010152284 0.0025839306 1.974165 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
AGO2 3 1830 0.010152284 0.0026534924 1.935840 AAAAAA,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TRA2B 15 7329 0.040609137 0.0106226650 1.934659 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AGAAGA,AGGAAA,AGGAAG,AUAAGA,GAAGAA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF4 7 3740 0.020304569 0.0054214720 1.905048 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
CELF2 3 1886 0.010152284 0.0027346479 1.892377 UAUGUU,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPD 5 2837 0.015228426 0.0041128408 1.888560 AAAAAA,AAUUUA,AUUUAU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SNRPB2 1 991 0.005076142 0.0014376103 1.820060 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ZCRB1 2 1605 0.007614213 0.0023274215 1.709962 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 3 2152 0.010152284 0.0031201361 1.702124 AAAACU,AAGACU,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SYNCRIP 2 1634 0.007614213 0.0023694485 1.684144 AAAAAA AAAAAA,UUUUUU
CELF1 3 2391 0.010152284 0.0034664959 1.550254 GUUGUG,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SSB 1 1260 0.005076142 0.0018274462 1.473904 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZRANB2 4 3173 0.012690355 0.0045997733 1.464098 GAGGUU,GGGUAA,GGUAAA,GUAAAG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
HNRNPU 2 1965 0.007614213 0.0028491350 1.418171 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
SART3 3 2634 0.010152284 0.0038186524 1.410669 AAAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
KHDRBS1 5 4064 0.015228426 0.0058910141 1.370179 CAAAAU,UAAAAC,UUAAAA,UUUUAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
TRA2A 9 6871 0.025380711 0.0099589296 1.349670 AAAGAA,AAGAAA,AAGAAG,AGAAGA,AGGAAG,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ELAVL3 3 2867 0.010152284 0.0041563169 1.288427 AUUUAU,AUUUUA,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
TIAL1 13 10182 0.035532995 0.0147572438 1.267736 AAAUUU,AAUUUU,AUUUUA,AUUUUU,GUUUUC,UAAAUU,UUCAGU,UUUAUU,UUUCAG,UUUUCA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
U2AF2 1 1477 0.005076142 0.0021419234 1.244826 UUUUUC UUUUCC,UUUUUC,UUUUUU
DAZAP1 7 5964 0.020304569 0.0086445016 1.231950 AAAAAA,AAUUUA,AGGAAA,AGGAAG,AGUUUA,UAGGAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
CPEB2 2 2261 0.007614213 0.0032780993 1.215835 AUUUUU,CAUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ELAVL2 23 18468 0.060913706 0.0267653478 1.186400 AAUUUA,AAUUUG,AAUUUU,AUUUAU,AUUUUA,AUUUUU,CAUUUU,CUUUAA,CUUUCU,GUUUUA,GUUUUC,UACUUU,UAUGUU,UAUUUG,UUACUU,UUAUUG,UUCAUU,UUUAAG,UUUACU,UUUAUG,UUUAUU,UUUCAU,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 1 1553 0.005076142 0.0022520629 1.172485 UUUUUC UUUUUC,UUUUUG,UUUUUU
ELAVL1 6 5554 0.017766497 0.0080503280 1.142040 AUUUAU,UGGUUU,UGUUUU,UUGGUU,UUGUUU,UUUAUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
RBMX 5 4925 0.015228426 0.0071387787 1.093018 AAGAAG,AGGAAG,AUCAAA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
A1CF 1 1642 0.005076142 0.0023810421 1.092139 CAGUAU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ACO1 1 8 0.09090909 0.0005894682 7.268867 CAGUGA CAGUGA,CAGUGC,CAGUGG
ENOX1 1 26 0.09090909 0.0017684045 5.683904 GUACAG AAGACA,AGACAG,AGGACA,AGUACA,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,UAGACA,UGGACA
HNRNPA1 1 119 0.09090909 0.0078595756 3.531901 AGUGAA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF1 1 625 0.09090909 0.0410007860 1.148773 ACAGUG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CPEB4 12 691 0.030952381 0.003486497 3.150200 UUUUUU UUUUUU
DDX19B 12 691 0.030952381 0.003486497 3.150200 UUUUUU UUUUUU
EIF4A3 12 691 0.030952381 0.003486497 3.150200 UUUUUU UUUUUU
ERI1 3 228 0.009523810 0.001153769 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPA0 2 200 0.007142857 0.001012696 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
U2AF2 14 1071 0.035714286 0.005401048 2.725190 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 14 1117 0.035714286 0.005632809 2.664575 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 12 1041 0.030952381 0.005249899 2.559689 UUUUUU AAAAAA,UUUUUU
KHDRBS2 12 1051 0.030952381 0.005300282 2.545909 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CPEB2 17 1487 0.042857143 0.007496977 2.515155 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
NOVA2 16 1434 0.040476190 0.007229948 2.485016 AGUCAU,AUCAAC,GAGUCA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPU 12 1136 0.030952381 0.005728537 2.433812 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
NOVA1 15 1428 0.038095238 0.007199718 2.403598 AUCAAC,UCAGUC,UCAUUC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPCL1 14 1381 0.035714286 0.006962918 2.358737 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
ELAVL3 18 1928 0.045238095 0.009718863 2.218679 AUUUAU,AUUUUA,UAUUUA,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RC3H1 5 631 0.014285714 0.003184200 2.165570 CCCUUC,UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBMS1 1 217 0.004761905 0.001098347 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.001118501 2.089973 UAUAUA AUAUAU,UAUAUA
HNRNPC 17 2006 0.042857143 0.010111850 2.083489 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 16 1945 0.040476190 0.009804514 2.045555 AUUUAA,CAAAAU,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
KHDRBS3 13 1646 0.033333333 0.008298065 2.006119 AAAUAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
FUS 13 1711 0.033333333 0.008625554 1.950277 UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SNRNP70 1 253 0.004761905 0.001279726 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
QKI 6 904 0.016666667 0.004559653 1.869970 ACACAC,CUACUC,CUCAUA,UAAUCA,UACUCA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TIAL1 42 5597 0.102380952 0.028204353 1.859958 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CUUUUG,CUUUUU,GUUUUU,UAAAUU,UUAAAU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 35 5140 0.085714286 0.025901854 1.726480 AUUUUC,AUUUUG,AUUUUU,CUCCUU,CUUUUG,CUUUUU,GUUUUA,GUUUUU,UCCUUU,UCUCCU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 19 2916 0.047619048 0.014696695 1.696047 AUUUAU,UAUUUA,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
A1CF 3 598 0.009523810 0.003017936 1.657976 AUAAUU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
DAZAP1 18 2878 0.045238095 0.014505240 1.640964 AAUUUA,AGGUUA,AGUAAG,AGUAUG,UAGUAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL2 62 9826 0.150000000 0.049511286 1.599133 AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUCU,CUUUUU,GAUUUU,GUUUUA,GUUUUU,UAAUUU,UAUAUA,UAUGUU,UAUUUA,UGAUUU,UGUAUU,UUAAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUAUG,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM46 6 1091 0.016666667 0.005501814 1.598986 AAUCAA,AAUGAA,AUGAAA,AUGAAG,AUGAUA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ELAVL1 20 3309 0.050000000 0.016676743 1.584091 AUUUAU,UAUUUA,UGAUUU,UGUUUU,UUGAUU,UUGUUU,UUUAUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ZNF638 3 646 0.009523810 0.003259774 1.546767 GUUCUU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PPIE 55 9262 0.133333333 0.046669690 1.514480 AAAAAU,AAAUAA,AAAUUU,AAUAAU,AAUUUA,AAUUUU,AUAAUU,AUAUAA,AUAUUU,AUUAAU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAUU,UAAUAA,UAAUAU,UAAUUU,UAUAUA,UAUUUA,UUAAAU,UUAAUA,UUAAUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ZCRB1 3 666 0.009523810 0.003360540 1.502846 AUUUAA,GGCUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SSB 2 505 0.007142857 0.002549375 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PCBP2 22 4164 0.054761905 0.020984482 1.383850 AAAUUC,AACCAA,ACAUUA,ACCAAA,CAUUAA,CCCUCC,CCCUUC,CCUCCC,CUCCCU,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
RBMS3 2 562 0.007142857 0.002836558 1.332360 CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
IGF2BP3 6 1348 0.016666667 0.006796655 1.294069 AAAAUC,AAAUCA,AAAUUC,ACAAUC,ACACAC,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ZFP36L2 3 774 0.009523810 0.003904676 1.286336 AUUUAU,UAUUUA,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC5 2 596 0.007142857 0.003007860 1.247764 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PCBP1 22 4891 0.054761905 0.024647320 1.151742 AAAUUC,AACCAA,ACAUUA,ACCAAA,CAUUAA,CAUUCC,CCCUCC,CCCUUC,CCUCCC,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPK 14 3244 0.035714286 0.016349254 1.127276 GCCCCU,UCCCUU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
RBMX 5 1316 0.014285714 0.006635429 1.106311 ACCAAA,AGUGUU,UAACAA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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