ENSG00000121073_ENSG00000121104:-:17:49716164:49717714

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000121073_ENSG00000121104:-:17:49716164:49717714 ENSG00000121073_ENSG00000121104 MSTRG.14643.15 - 17 49716165 49717714 353 AUCCUUGAUAUCCCUGAUGGGCACCGGGCCCCAGCUCCUCCCCAGAGUGGCAGCUGUGAUCAUCCCCUCCUCCUCCUGGAGCCUGGCAACCUUGCCAGCUCUCCUUCCAUGUCCUUGGCAUCUCCCCAGCCUUGUGGCCUGGCCAGUCAUGAGGAACAUCGGGGUGCCGCCGAGGAGCUGGCAUCCACCCCCAACGACAAAGCCUCCUCUCCAGGACACCCAGCCUUUCUUGAAGAUGGCAGCCCAUCUCCAGUCCUUGCCUUUGCUGCCUCCCCUCGACCUAAUCAUAGCUACAUCUUCAAACGGGAGCCCCCAGAAGGCUGUGAGAAAGUGCGUGUGUUUGAAGAAGCCACAUCCUUGAUAUCCCUGAUGGGCACCGGGCCCCAGCUCCUCCCCAGAGUGG circ
ENSG00000121073_ENSG00000121104:-:17:49716164:49717714 ENSG00000121073_ENSG00000121104 MSTRG.14643.15 - 17 49716165 49717714 22 GAAGAAGCCACAUCCUUGAUAU bsj
ENSG00000121073_ENSG00000121104:-:17:49716164:49717714 ENSG00000121073_ENSG00000121104 MSTRG.14643.15 - 17 49717705 49717914 210 GUGCUAUGGAAGAAACAGGAGGGAGUUUCUUCUAGAUUGAAGGGUGGCCAGGGAAAUAAAUCGCUGGAGGAAAUGGUGUUCUGUGGUUGUGUGUCAUGGAUAGAGAAUGACAGCAGCAAGGGAAAUACCCUUGGGGUCACUGUGCUGCUGCAGGCCUGAAAUACUCAGGGCUGACAGUCUUUACCGUCCUUCCCCGUUAGAUCCUUGAUA ie_up
ENSG00000121073_ENSG00000121104:-:17:49716164:49717714 ENSG00000121073_ENSG00000121104 MSTRG.14643.15 - 17 49715965 49716174 210 AAGAAGCCACGUGAGUACACCAAGUGGACAGGGUGUGGGAGGGGAGGGUGGGCCUACAUUCUCCCACCUUCUUCAGUCUUGGACUCUCUCUUGUCAUAGAGGUGUUGUCAACUUUAGAUGAUAAGUAUUGCCAGCUUUCCAUGAUCAAACGUGUUGACAUUACCUACUCUGAGCACUUAAAUCUUUGCUUAUCAUUAUCUCCAUAGAAAC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 268 0.005665722 0.0003898359 3.861321 AUCGGG AUCGGG,CGGGCA,UCGGGC
FXR1 1 411 0.005665722 0.0005970720 3.246283 ACGACA ACGACA,ACGACG,AUGACA,AUGACG
SRSF11 1 688 0.005665722 0.0009985015 2.504423 AAGAAG AAGAAG
CELF5 3 1415 0.011331445 0.0020520728 2.465178 GUGUGU,GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
MATR3 1 739 0.005665722 0.0010724109 2.401402 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 3 1480 0.011331445 0.0021462711 2.400428 AACAUC,ACAUCG,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CSTF2 4 1967 0.014164306 0.0028520334 2.312197 GUGUGU,GUGUUU,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF4 3 1782 0.011331445 0.0025839306 2.132693 GUGUGU,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
NONO 2 1498 0.008498584 0.0021723567 1.967961 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM6 1 1054 0.005665722 0.0015289102 1.889756 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA3 3 2140 0.011331445 0.0031027457 1.868714 AGGAGC,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
QKI 4 2805 0.014164306 0.0040664663 1.800412 AAUCAU,AUCAUA,CUAAUC,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM24 3 2357 0.011331445 0.0034172229 1.729436 AGAGUG,GAGUGG,GUGUGU AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
HNRNPAB 2 1782 0.008498584 0.0025839306 1.717655 ACAAAG,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF1 3 2391 0.011331445 0.0034664959 1.708782 GUGUGU,UGUGUU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
AGO2 2 1830 0.008498584 0.0026534924 1.679330 AAAGUG,AAGUGC AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PCBP2 16 11045 0.048158640 0.0160079069 1.589010 CCCCCA,CCCUCC,CCUCCC,CCUCCU,CCUUCC,CUCCCC,CUUCCA,UCCCCA AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
SAMD4A 5 3992 0.016997167 0.0057866714 1.554489 CGGGCC,CUGGCA,CUGGCC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
CELF6 3 2997 0.011331445 0.0043447134 1.382999 UGUGAG,UGUGAU,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBM4 3 3065 0.011331445 0.0044432593 1.350642 CCUUCC,UCCUUC,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
PABPC5 2 2400 0.008498584 0.0034795387 1.288326 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 1 1642 0.005665722 0.0023810421 1.250667 UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP1 16 14282 0.048158640 0.0206989801 1.218235 ACCCCC,CACCGG,CAUCGG,CCACCC,CCCAUC,CCCCAG,CCCCCA,CCCCUC,CCCUCC,CCCUCG,CCGCCG ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
HNRNPK 10 9304 0.031161473 0.0134848428 1.208425 ACCCCC,CAUCCC,CCCCAA,CCCCCA,GCCCCC,UCCCCA,UCCCCU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
SRSF4 3 3740 0.011331445 0.0054214720 1.063575 AAGAAG,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
CELF2 1 1886 0.005665722 0.0027346479 1.050905 GUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PUM2 1 1890 0.005665722 0.0027404447 1.047850 UACAUC GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF5 1 44 0.09090909 0.002947341 4.946939 CACAUC AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF3 1 61 0.09090909 0.004060781 4.484596 CACAUC AACGAU,ACCACC,ACUACG,AGAGAU,CACAAC,CACAUC,CACCAC,CAGAGA,CAUCAC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CUACAG,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUUAU,GACUUC,GAGAUU,UACAGC,UCAGAG,UCUCCA,UCUUCA,UCUUCC,UGUCAA,UUCGAC,UUCUCC,UUCUUC
SRSF6 1 68 0.09090909 0.004519256 4.330267 CAUCCU AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PTBP2 2 146 0.007142857 0.0007406288 3.269679 CUCUCU CUCUCU
TUT1 3 230 0.009523810 0.0011638452 3.032640 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
EIF4B 2 226 0.007142857 0.0011436921 2.642803 CUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF4 8 776 0.021428571 0.0039147521 2.452543 GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 CCCGUU AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 GUAUUG,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGG,GUGUGU,GUGUUG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SRSF4 4 558 0.011904762 0.0028164047 2.079612 AAGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF1 7 1097 0.019047619 0.0055320435 1.783726 GUGUGU,GUGUUG,GUUGUG,UGUGUG,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
FXR2 4 730 0.011904762 0.0036829907 1.692589 GACAGG,GGACAG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPH3 16 2496 0.040476190 0.0125806127 1.685871 AAGGGA,AGGGAA,AGGGGA,GAAGGG,GAGGGG,GGAGGA,GGAGGG,GGGAGG,GGGCUG,GGGGAG,GGGUGU,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
LIN28A 5 900 0.014285714 0.0045395002 1.653968 GGAGGA,GGAGGG,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CCUUCU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUGU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF6 6 1196 0.016666667 0.0060308343 1.466536 GUGUGG,GUGUUG,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUGUGU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPH2 17 3198 0.042857143 0.0161174929 1.410908 AAGGGA,AGGGAA,AGGGGA,GAAGGG,GAGGGG,GGAGGA,GGAGGG,GGGAGG,GGGCUG,GGGGAG,GGGUGU,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH1 18 3406 0.045238095 0.0171654575 1.398030 AAGGGA,AGGGAA,AGGGGA,GAAGGG,GAGGAA,GAGGGG,GGAGGA,GGAGGG,GGGAGG,GGGCUG,GGGGAG,GGGUGU,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AUCAAA,AUCAUU,AUGAUA,GAUCAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAA,GGGGAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPF 17 3360 0.042857143 0.0169336961 1.339639 AAGGGA,AGGGAA,AGGGGA,GAAGGG,GAGGAA,GAGGGG,GGAGGA,GGAGGG,GGGAGG,GGGCUG,GGGGAG,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGUACA,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBM5 11 2359 0.028571429 0.0118903668 1.264780 AGGGAA,AGGGAG,AGGGUG,CAAGGG,GAAGGG,GAGGGA,GAGGGU,UCUUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUGU,GUGUUG,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GAAUGA,GUGUGU,GUUGUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUUCC,CCUUCU,CUUCUU,UCCUUC CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
RBM24 3 888 0.009523810 0.0044790407 1.088349 GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAAA,AAGAAG,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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