ENSG00000149269:-:11:77358897:77392538

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000149269:-:11:77358897:77392538 ENSG00000149269 MSTRG.6033.5 - 11 77358898 77392538 615 CUGCUGCUGGUGGUGACAAUGUCAAAUAACGGCCUAGACAUUCAAGACAAACCCCCAGCCCCUCCGAUGAGAAAUACCAGCACUAUGAUUGGAGCCGGCAGCAAAGAUGCUGGAACCCUAAACCAUGGUUCUAAACCUCUGCCUCCAAACCCAGAGGAGAAGAAAAAGAAGGACCGAUUUUACCGAUCCAUUUUACCUGGAGAUAAAACAAAUAAAAAGAAAGAGAAAGAGCGGCCAGAGAUUUCUCUCCCUUCAGAUUUUGAACACACAAUUCAUGUCGGUUUUGAUGCUGUCACAGGGGAGUUUACGGGAAUGCCAGAGCAGUGGGCCCGCUUGCUUCAGACAUCAAAUAUCACUAAGUCGGAGCAGAAGAAAAACCCGCAGGCUGUUCUGGAUGUGUUGGAGUUUUACAACUCGAAGAAGACAUCCAACAGCCAGAAAUACAUGAGCUUUACAGAUAAGUCAGCUGAGGAUUACAAUUCUUCUAAUGCCUUGAAUGUGAAGGCUGUGUCUGAGACUCCUGCAGUGCCACCAGUUUCAGAAGAUGAGGAUGAUGAUGAUGAUGAUGCUACCCCACCACCAGUGAUUGCUCCACGCCCAGAGCACACAAAAUCUCUGCUGCUGGUGGUGACAAUGUCAAAUAACGGCCUAGACAUUCAAGACAA circ
ENSG00000149269:-:11:77358897:77392538 ENSG00000149269 MSTRG.6033.5 - 11 77358898 77392538 22 ACACAAAAUCUCUGCUGCUGGU bsj
ENSG00000149269:-:11:77358897:77392538 ENSG00000149269 MSTRG.6033.5 - 11 77392529 77392738 210 AUUUUUCAUUAGUGCUUGGCAUAUAGUAGGCAUUUACAUCAGUGAGUGUUAGCAAUAUCAUGGUGUGCAGUGGAAGGACUUGAGCUAGACCCUGAAGGAAGGGCUGUAUAAUUUUGAUUCUUUGCAAUUUUUUAACAUGUAUUUCCUUUUGGUCAAAAAUAAUAAAAGAGUUAUAUUGUUCUUAUUUCUGAUUCUAGUAGCUGCUGCUGG ie_up
ENSG00000149269:-:11:77358897:77392538 ENSG00000149269 MSTRG.6033.5 - 11 77358698 77358907 210 CACAAAAUCUGUGAGUCUUUGGGGACCUGGCCAGUUUUGUGAUUUAUUAGAGUAAGUGGGGAGAGGGAGGAGUUGGUGCUGAUACCUAGAAGUUUAAUAUUCUGGUAGGCGUCCUUAGAUUUUGGAGCUGGUGAAAUCACUGAACUACCUUGACUAAAGGUACUUUCUGUAUGAUUAAAGACAAAAAAUCAUGUGUUUAUUUAUCAUUGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 4 632 0.008130081 0.0009173461 3.147732 UUCAGA,UUUCAG UUCAGA,UUUCAG
PABPN1 6 1222 0.011382114 0.0017723764 2.683012 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM42 1 407 0.003252033 0.0005912752 2.459440 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
TUT1 2 678 0.004878049 0.0009840095 2.309560 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 2 688 0.004878049 0.0009985015 2.288468 AAGAAG AAGAAG
RBMY1A1 1 489 0.003252033 0.0007101099 2.195227 CAAGAC ACAAGA,CAAGAC
HNRNPAB 5 1782 0.009756098 0.0025839306 1.916737 AAGACA,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPL 16 5085 0.027642276 0.0073706513 1.907012 AAACAA,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,CACAAA,CACACA,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
PABPC3 3 1234 0.006504065 0.0017897669 1.861570 AAAAAC,AAAACA,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 3 1283 0.006504065 0.0018607779 1.805436 CAGUGA,CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
IGF2BP3 14 4815 0.024390244 0.0069793662 1.805136 AAAAAC,AAAACA,AAAAUC,AAAUAC,AACACA,AAUACA,AAUUCA,ACAAAC,ACACAC,ACAUUC,CACACA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
G3BP2 4 1644 0.008130081 0.0023839405 1.769922 AGGAUG,AGGAUU,GGAUGA,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC1 12 4443 0.021138211 0.0064402624 1.714662 AAAAAC,ACAAAC,ACAAAU,AGAAAA,CAAACC,CAAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
KHDRBS3 9 3429 0.016260163 0.0049707696 1.709801 AAAUAA,AAUAAA,AGAUAA,AUAAAA,GAUAAA,UAAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PABPC5 6 2400 0.011382114 0.0034795387 1.709801 AGAAAA,AGAAAG,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2A 19 6871 0.032520325 0.0099589296 1.707279 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,AGAGGA,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM46 12 4554 0.021138211 0.0066011240 1.679070 AUCAAA,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM6 2 1054 0.004878049 0.0015289102 1.673801 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
KHDRBS2 4 1858 0.008130081 0.0026940701 1.593482 AAUAAA,AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SRSF4 9 3740 0.016260163 0.0054214720 1.584585 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
EIF4B 2 1179 0.004878049 0.0017100607 1.512257 GUCGGA,GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
IGF2BP2 20 8408 0.034146341 0.0121863560 1.486464 AAAAAC,AAAACA,AAAAUC,AAAUAC,AACACA,AAUACA,AAUUCA,ACAAAC,ACACAC,ACAUUC,CAACUC,CAAUUC,CACACA,CAUUCA,CCAAAC,GAACAC,GCACAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
SNRNP70 2 1237 0.004878049 0.0017941145 1.443032 AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC4 2 1251 0.004878049 0.0018144033 1.426809 AAAAAG AAAAAA,AAAAAG
SSB 2 1260 0.004878049 0.0018274462 1.416475 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SART3 5 2634 0.009756098 0.0038186524 1.353241 AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBM41 2 1318 0.004878049 0.0019115000 1.351599 AUACAU,UACAUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ZNF638 3 1773 0.006504065 0.0025708878 1.339075 GGUUCU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
KHDRBS1 8 4064 0.014634146 0.0058910141 1.312751 AUAAAA,CAAAAU,UAAAAA,UAAAAC,UUUUAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
TRA2B 15 7329 0.026016260 0.0106226650 1.292268 AAAGAA,AAGAAG,AGAAGA,AGAAGG,GAAAGA,GAAGAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
CELF5 2 1415 0.004878049 0.0020520728 1.249222 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 3 1967 0.006504065 0.0028520334 1.189351 GUGUUG,GUUUUG,UGUGUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
YBX2 2 1480 0.004878049 0.0021462711 1.184472 ACAACU,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SNRPB2 1 991 0.003252033 0.0014376103 1.177669 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPM 1 999 0.003252033 0.0014492040 1.166081 GAAGGA AAGGAA,GAAGGA,GGGGGG
HNRNPLL 6 3534 0.011382114 0.0051229360 1.151726 ACAAAC,ACACAC,CACACA,CACCAC,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ENOX1 5 3195 0.009756098 0.0046316558 1.074776 AAGACA,AAUACA,CAGACA,UAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SRSF10 25 13860 0.042276423 0.0200874160 1.073561 AAAAGA,AAAGAA,AAAGAG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AGACAA,AGAGAA,AGAGGA,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAG,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NELFE 1 8 0.09090909 0.0005894682 7.268867 UCUCUG CUCUGG,CUGGCU,CUGGUU,UCUGGC,UCUGGU
MBNL1 1 36 0.09090909 0.0024233691 5.229338 UCUGCU AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUG,CCUGCU,CGCUGC,CGCUGU,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUU,CUUGCU,GCUUGC,GCUUGU,GGCUUU,GUGCUG,UGCGGC,UGCUGC,UGCUGU,UGCUUU,UUGCCU,UUGCUC,UUGCUG,UUGCUU,UUGUGC
SRSF6 1 68 0.09090909 0.0045192560 4.330267 UCUCUG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPM 3 222 0.009523810 0.0011235389 3.083489 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
HNRNPAB 4 351 0.011904762 0.0017734784 2.746885 AAAGAC,AAGACA,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
ZFP36L2 7 774 0.019047619 0.0039046755 2.286336 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPD 10 1488 0.026190476 0.0075020153 1.803692 AAAAAA,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
MSI1 6 961 0.016666667 0.0048468360 1.781850 AGGAAG,AGUAAG,AGUAGG,AGUUGG,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBMX 8 1316 0.021428571 0.0066354293 1.691274 AAGGAA,AGGAAG,AGUGUU,GAAGGA,GGAAGG,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUCUU,GUUGGU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 GAUUAA,GAUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAAAA,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAU,AUCAUG,AUCAUU,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AUAUAG,CAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
CELF4 3 776 0.009523810 0.0039147521 1.282618 GGUGUG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SAMD4A 3 790 0.009523810 0.0039852882 1.256855 CUGGCC,CUGGUA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGGAA,AGGAAG,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUAU,UAUUUA,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SF1 5 1294 0.014285714 0.0065245869 1.130615 AGUAAG,CACUGA,GACUAA,UGCUGA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home