ENSG00000124541:+:6:43024984:43029190

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000124541:+:6:43024984:43029190 ENSG00000124541 MSTRG.28286.2 + 6 43024985 43029190 660 GCACAUCUAACAUGUCAUUUGAGGAGCUGUUGGAAUUGCAGAGCCAAGUGGGGACUAAGACGUACAAACAAUUGGUAGCUGGAAAUAGUCCUAAGAAACAAGCUUCUAGACCACCUAUCCAAAAUGCAUGUGUUGCAGAUAAGCACAGGCCUCUGGAAAUGUCAGCCAAGAUCCGAGUACCAUUUUUACGUCAGGUUGUUCCCAUUAGUAAAAAGGUAGCCCGGGACCCUCGCUUUGAUGAUCUGUCAGGGGAAUAUAAUCCUGAGGUGUUUGACAAAACAUACCAAUUCUUGAAUGACAUCCGAGCGAAAGAGAAAGAGCUAACAUUUGCAGAAUGCUAACCAUGAUACUCAUUUUCCAAUGUGGAGCUUGUGAAAAAACAGUUGAAGAAGCACCUUUCAGGAGAGGAGCAUGAGAAACUGCAGCAACUGCUUCAGCGAAUGGAGCAGCAAGAAAUGGCACAGCAGGAACGAAAGCAACAGCAGGAGCUGCACCUGGCCCUGAAGCAAGAACGUCGGGCUCAGGCCCAGCAGGGCCAUCGGCCAUACUUCCUGAAAAAAUCUGAGCAGCGCCAGUUGGCACUAGCUGAGAAGUUCAAGGAGCUGAAACGCAGCAAGAAAUUGGAGAACUUCUUGAGUCGAAAGAGGCGACGAAAUGCAGGCACAUCUAACAUGUCAUUUGAGGAGCUGUUGGAAUUGCAGAGCCAAGUG circ
ENSG00000124541:+:6:43024984:43029190 ENSG00000124541 MSTRG.28286.2 + 6 43024985 43029190 22 ACGAAAUGCAGGCACAUCUAAC bsj
ENSG00000124541:+:6:43024984:43029190 ENSG00000124541 MSTRG.28286.2 + 6 43024785 43024994 210 UCCUUAGCAAGAUGAGGCCCCAGGUUGCUGAAAUAGUUGGAGAGUUUAACACUAUCACAGCCUCUGCUGCCUAGGACUUCUAAUAAUGAUUGGUCUGAUGGGGUAUUAGGAUUAGCUAGCUAAGGAAUGGGGAUGGGAAGAUGUCUUUUCUGCAGUGGGACAUGCUGAGCUGAGUUGUAUGUCCCUCCCCACUUCCACAGGCACAUCUAA ie_up
ENSG00000124541:+:6:43024984:43029190 ENSG00000124541 MSTRG.28286.2 + 6 43029181 43029390 210 CGAAAUGCAGGCAAGGACAGGAGACAUCUCCCUUUGAGCAAAGAGUAAUAAGGAACUAUCCUCUGCUCUGCCACUGCCCCAGGGAGACAUGGAUCUGUGAGGACAGAUUUGGCCACGGCUGGUUUCCGUUCAAGGGCAAGGAUCACAGCUGCCCUUGAAUCUCAUUGCCUCAGAGAAGACUAGAGGGCUCUUGGACUAUCCCUAGGGCUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 3 339 0.006060606 0.0004927293 3.620595 AGACGU,GACGAA,GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM25 1 268 0.003030303 0.0003898359 2.958523 UCGGGC AUCGGG,CGGGCA,UCGGGC
ZC3H10 5 1053 0.009090909 0.0015274610 2.573289 CAGCGA,CAGCGC,CGAGCG,GAGCGA,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
AGO1 2 548 0.004545455 0.0007956130 2.514286 AGGUAG,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 4 991 0.007575758 0.0014376103 2.397717 AUUGCA,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM42 1 407 0.003030303 0.0005912752 2.357560 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 1 411 0.003030303 0.0005970720 2.343485 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGF2BP1 3 831 0.006060606 0.0012057377 2.329546 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBFOX1 4 1077 0.007575758 0.0015622419 2.277772 AGCAUG,GCAUGA,GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBFOX2 1 452 0.003030303 0.0006564894 2.206618 UGCAUG UGACUG,UGCAUG
HNRNPA3 8 2140 0.013636364 0.0031027457 2.135842 AAGGAG,AGGAGC,CAAGGA,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IGHMBP2 2 813 0.004545455 0.0011796520 1.946063 AAAAAA AAAAAA
EIF4B 3 1179 0.006060606 0.0017100607 1.825415 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC3 3 1234 0.006060606 0.0017897669 1.759690 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC4 3 1251 0.006060606 0.0018144033 1.739967 AAAAAA,AAAAAG AAAAAA,AAAAAG
ERI1 1 632 0.003030303 0.0009173461 1.723924 UUUCAG UUCAGA,UUUCAG
TUT1 1 678 0.003030303 0.0009840095 1.622718 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF11 1 688 0.003030303 0.0009985015 1.601626 AAGAAG AAGAAG
RBM6 2 1054 0.004545455 0.0015289102 1.571921 AUCCAA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
CELF5 3 1415 0.006060606 0.0020520728 1.562380 GUGUUG,GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 4 1782 0.007575758 0.0025839306 1.551823 GGUGUU,GUGUUG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
NONO 3 1498 0.006060606 0.0021723567 1.480201 AGAGGA,AGGAAC,GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
CSTF2 4 1967 0.007575758 0.0028520334 1.409399 GUGUUG,GUGUUU,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
QKI 6 2805 0.010606061 0.0040664663 1.383041 ACUCAU,AUCUAA,CUAACA,CUAACC,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC1 10 4443 0.016666667 0.0064402624 1.371774 AAAAAA,AAAAAC,ACAAAC,CAAACA,CUAACA,CUAACC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SNRNP70 2 1237 0.004545455 0.0017941145 1.341153 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM3 4 2152 0.007575758 0.0031201361 1.279781 AAGACG,GAAACG,GAAACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SART3 5 2634 0.009090909 0.0038186524 1.251361 AAAAAA,AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TARDBP 5 2654 0.009090909 0.0038476365 1.240452 GAAUGA,GAAUGG,GUUGUU,UGAAUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ZNF638 3 1773 0.006060606 0.0025708878 1.237195 GGUUGU,GUUGUU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
IFIH1 1 904 0.003030303 0.0013115296 1.208212 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
PABPC5 4 2400 0.007575758 0.0034795387 1.122494 AGAAAG,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
HNRNPDL 17 8759 0.027272727 0.0126950266 1.103196 AACAGC,ACAGCA,ACUAAG,ACUAGC,ACUGCA,AUACCA,AUCUGA,CACUAG,CAUUAG,CUAACA,CUAGCU,GCACUA,GGACUA,GUAGCC,GUAGCU AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
SF1 9 4931 0.015151515 0.0071474739 1.083957 ACUAAG,ACUAGC,CUAACA,GACUAA,GCUAAC,UAGUAA,UGCUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
HNRNPA2B1 16 8607 0.025757576 0.0124747476 1.045986 AAGAAG,AAGGAG,AGAAGC,AGGAAC,AGGAGC,CAAGAA,CAAGGA,CCAAGA,CUAGAC,GCCAAG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
G3BP1 2 69 0.13636364 0.004584752 4.894471 AGGCAC,CAGGCA ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
SFPQ 3 153 0.18181818 0.010086455 4.172005 CAGGCA,GCAGGC,UGCAGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
FMR1 1 117 0.09090909 0.007728583 3.556149 AGGCAC AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 GCAGGC AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF1 2 625 0.13636364 0.041000786 1.733736 GCAGGC,GGCACA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
EIF4B 3 226 0.009523810 0.0011436921 3.057840 CUUGGA,GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA AAGGAA,GAAGGA,GGGGGG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 2 263 0.007142857 0.0013301088 2.424957 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUU,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
FXR2 4 730 0.011904762 0.0036829907 1.692589 GACAGA,GACAGG,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
ESRP2 4 731 0.011904762 0.0036880290 1.690617 GGGAAG,GGGGAU,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AGGACA,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACU,AGACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGAAGA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
G3BP1 16 3431 0.040476190 0.0172914148 1.227018 ACAGGC,AGGCAC,AGGCCC,CACAGG,CAGGCA,CCACAG,CCCAGG,CCCCAC,CCCCAG,CCCUAG,CCCUCC,CCUAGG ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
HNRNPA2B1 9 2033 0.023809524 0.0102478839 1.216213 AAGGAA,ACUAGA,AGACUA,AGGAAC,CAAGGA,CAAGGG,GACUAG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCCCUU,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 GCUGCC,UGCUGA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GGAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 ACUAGA,AUUAGC,AUUAGG,CUAGAG,CUAGCU,CUAGGA,GAACUA,GACUAG,GAUUAG,GGACUA,GGAUUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AGAAGA,CACAGC,CACAUC,CACGGC,GGAAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACUA,AUCUAA,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
FMR1 22 5430 0.054761905 0.0273629585 1.000948 AAGGAA,AAGGAU,AGGAAU,AGGAUU,AGGCAC,AGGGAG,CAGCUG,CGGCUG,CUAAGG,GACAGG,GCUAAG,GCUGAG,GGACAG,GGACUA,GGCUGG,GGGCUA,UAAGGA,UGAGGA AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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