ENSG00000130414:-:2:239990073:240022340

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000130414:-:2:239990073:240022340 ENSG00000130414 ENST00000678188 - 2 239990074 240022340 4057 AGAGGAAUUCAUAGCAGUGUGCAGUGCAAACUGCGCUAUGGAAUGUGGCAUUUCCUACUUGGGGAUAAAGCAAGCAAAAGACUGACAGAACGCAGCAGAGUGAUAACUGUAGAUGGCAAUAUAUGUACUGGAAAAGGCAAACUUGCAAAAGAAAUAGCAGAGAAACUAGGCUUCAAGCACUUUCCUGAAGCGGGGAUUCAUUAUCCAGACAGUACCACAGGAGAUGGGAAGCCCCUCGCCACCGACUAUAAUGGCAACUGUAGUUUGGAGAAAUUUUACGAUGAUCCGAGAAGCAAUGAUGGCAACAGUUACCGCCUGCAGUCCUGGUUGUACAGCAGUCGCCUGCUGCAGUACUCAGAUGCCUUGGAGCACUUGCUGACCACAGGACAAGGUGUUGUGUUGGAGCGCUCCAUCUUCAGUGACUUUGUGUUCCUGGAGGCGAUGUACAACCAGGGAUUCAUCCGAAAGCAGUACUGGGGUGGCUGGAGCCAGUGGAAAGCUGGAAUCUGGGAGCUCAGAGGAAGUACUGUUGAUUAAUGAAAGAGGAGGCCGAAGCAAGCCAGGUGUGGACCACUACAACGAGGUGAAGAGCGUCACCAUCUGCGAUUACCUGCCCCCCCACCUGGUGAUUUACAUCGAUGUGCCCGUUCCAGAGGUCCAGAGGCGGAUUCAGAAGAAAGGAGAUGUAAUGCAGUUUUCAAUCAAAGGCCAAGCAUCUCUAUUUUGAAUGUAGAUCAGCACUAAAAGCCCUGUUUUAAUAGCAUUUAUACUAAUUCCUACCAGUCCUCACGAGGAGGGUGACACACACCCUGUUCCCACUUGAGAGAGGGCAUCUGCAGGGGUGGAGGGGAGACCCCAUGGCUCGGCCUGGUGCCACAGCCUGCGGGCCUGCCGCCCACCAGUGCUCUGCGGUCCCACUGUGGUCCCCGAGUCCCCUCAGCUGUUUAAACUUGGGAGGCUGGUGAGGGCCUCCUGGCAGAGCGUCCUCCAUCCCUCUGUCACGUACCUUUCUGUUCUCUGAUGAGGUUUUUGUGUCCUAUCGUUUUCUUCCACAUUGGAAGCAAUUUCUAAUAUCCCUCAUCACUUCAAUCUAUUUAACGCAAAUCGUGCCUCUCCCCCUUUUUCUUACUUACCAAUUCUAGAACAGUAGAGCAGUGAUAUCCACACACAUCCAUUUACUCUUUGUAGUUUUCAUUGGAUCUUAAUUAGGUGGCCUCGAAGCAACGCCUUUUGAAGUGACCCUGUGGCCGUUGGUAGCUCUGUUGGCGGCUUGAUGGAGGAUCCUGAGAUGAAACAAAGACCGUCUUUGCCCUGUGGCGAGUUCUUUGUUUUUUUUUUUUGAGACAGAGUCUCGCUCUGUCACCCAGGCUGGAGUGCAGUGGCACGAUCUCGGCUCACUGCAAGCUCCGCCUCCCGGGUUCACGCCAUUCUCCUGCCUCAGCCUCCCAAGUAGCUGGGACUACAGGCGCACGCCACCAUGCCCGGCUAAUUUUUUUGUAUUUUUAGUAGAGACGGGGUUUCACUGCUUGUUUAAUACUAUGUUAUUUUUUCCUGGAGGAGAAUAUGGUCUCCUUUUUGAUACUGUGAUGAAAAUGCAGGGCUACCUGCCUGUUCCUCACUCUGAUGCCCAUCCUCAGUGCCGGAAUUCUUGUAGGUGCUCAGGAAAUACCUCUCUGGAUGGUGGGUUCUUGUCAGGGCAACAGUAAAGCUCUGGUUAUUUUUUGCUGCUCCUGAAAGAUCCAUGGGACUAACUUUCCUUCUCUGUUGCAAUAGUAGAAACAGCGAGAUGUCUAUGUAUGCCUUUCUAUUGCCACUCUGGAACUUUUAUUGUUUAAGCAUAUGCUUGUAAGUAUGUUGUAUAGCUAGACUUCUAAGAACCUUCCAUCAAGUGGCAAAAGGAGGGAACUGCAAGUUCAAAAUGUUUGUUUCUCAGUGGACUAACUGGACACCUUUGCUUAUUAUGCUGACAUUUAUUGAGAAAAACAAAGUCAUACAUUUAACAUUCUCUAGAUAAUUCUUUUGUUAUCUGGGAAAACAGUAUUUCAAAAAUAAUUCUGAGGUCUAAAGUAGAGCUGUCAACUUCUUAAUUUUUCCAAGUAAAGUCUUCAAUACUGUCAUCAGGUAAAAUUACCCCAUUUUAUAAAAGACAUCACAUUAUCAGUAAGUCUGUGUUCUUAUUUUGAUUUUUAUUUCAAUGCAGUCUGUGUCUCAGUAUUGCACCUUUUGGGAAUAACUGAUAGGAAUAUCCGAAAACCAUUUCUAGAUUCUAAGAAAACAGUCAAAGUGAUCAAUAACUACAUAUUUUAUCAAGUAACUUCAGGUCAGAUUUCUGAGAUGGUUGUGUUAUGUUGCAUGUUAUGGGCUUAUAUUACACUAGAGUUUCUUUUAUAAUCAGUUAACAUUUAAUCUUAUUCUACUUGGCACAUAGCUAAUGAUAGAGAUUUAGAAUCAUAUCACCUCUUUUAUACUUUUGUUGAUUUCACUCACUCCUCUAAUACAGAGCACCUCCUAUAUGCAAGGCGCCUGUGCCAGGCACCUAGGAGGCUGCAAAGAUGAACAAAGAUGGUCUCUGCCCAGACACCAAGUCCUUAUUGGAAAAUAGAACUCCCAAUUACUGCCUUUCCCCCUUUUGACAGAGCAAUGAAGUGCAGCAUUGCCUGUAUCAUCCUUUCCCUGUGCCCCGUCGCAUUACUGGAAUUAAUACAUGUUCAGUAAAUAUUCUUUGAAUGAUAGGGUUUUUCUUAUUUUGAACAGCUUUAAUGAGGUAUAAUUUAUGCUCCAUAAAAUUCACCCAUUUUAAGGGUACGACUGAAUGAUUUUGGGUAAAUUUACCAAGUUGUUGCCACUCUUGCCAUAAUCCAGUUUUAGAAUGUUUUCAUCAUUUUGUAGGUUGAAACCGCAGGCCUAUUCAUUUCUUUCUUCCUUCCUCUCUCUCCUGUAAGUGUUGAUUGAGCAUCCACCCUGUCCUAGACCCUGCUUGGUGCUAGGGACAUACCAGUGAGCAGGGUGGAUGAGGUCCUCACCCGUGAGCUCAUAUGCUGAUGGGGGAGACCUACAGCAAGCAAGGAGAUAAAUAAAUACAUCAAAUAGAGGUAAAUGAUGUGAAGAAAACAAAACGGGCUGAGAAGAUAGUGUGAGACUGUAAGGAGUUUUAAAUUUUAAAACUUGCUACUCAUAAUUAGAUAUUCAAGUUUCUGAAAUUCGCAUAGUGCAUUUCAGAUGAUGAGAGAGGUGACAGCCGUAGAAAGUGGGAGAAGUGGUUGCGGGGAGAUGGGUGAGCGAUGGAGGUGGCGAGCAAGUUGGAGAGAUGCAGGGAGAGUCAGGUGACAAGAAGAGAGUGUGCUGAGGACAGAUGGCGGACAGACAGGCCGCUGCCCCCAAUUUUUGGUGCUCUUUCAUUCCUGCACUCAGGCACGAGGCAGACAGGAAAGACAGGCAGUGCUGCUUCGUAACAGGCAUCUUUCUUGCCCUAAGUAUACAUCUUAGAAUGUGUGGAGAAAGUCACGCUAUGGGAGCACUUGGGCAGGCUCAGGUGUUCACUGUAGUAGAAGGAGAAUGACUCUAGCUGAUGUUGGGACCCUUUGCUGUCACCCCGCAGUCCCCACAGUGCCCGGUGUGAGUUGUAAGAAAAUGGUGGUCAGUGAUUGUCUUCGCAUUUUAUAUACGCACAGGUCAAAGAGAAUGAACUCUAAAUGUUUCCCAGUUUGAUUUUUCUGCUUCUGUUUAGCCACAUGAAAUGAAGAUCACCUCUGCCUAUCUACAGGACAUUGAGAAUGCCUAUAAGAAAACCUUUCUCCCUGAGAUGAGUGAAAAAUGUGAGGUUUUACAAUAUUCUGCAAGGGAAGCUCAAGAUUCAAAAAAGGUGGUAGAGGACAUUGAAUACCUGAAGUUCGAUAAAGGGCCGUGGCUCAAGCAGGACAAUCGCACUUUAUACCACCUGCGAUUACUGGUUCAGGAUAAGUUUGAGGUGCUGAAUUACACAAGCAUUCCUAUCUUUCUCCCGGAAGUCACCAUUGGAGCUCAUCAGACUGACCGUGUCUUACAUCAGUUCAGAGAGAGAGGAAUUCAUAGCAGUGUGCAGUGCAAACUGCGCUAUGGAAUGUGGCA circ
ENSG00000130414:-:2:239990073:240022340 ENSG00000130414 ENST00000678188 - 2 239990074 240022340 22 AGUUCAGAGAGAGAGGAAUUCA bsj
ENSG00000130414:-:2:239990073:240022340 ENSG00000130414 ENST00000678188 - 2 240022331 240022540 210 AUAUCUGCCUUUAACGAAACUUACAUGGACAGAGUGGUGGGGGAUAGACAGAUAAUUAAACAAAUUAAUAGGCAAUAAAGAUGUAGAUGUUGGCAUUUUUAUCACUAAGAGGUUUCUUGGUAUUUUUACCUAAUAGUUACUAAUGCCUACAGGAACCAGAGUGGUCACAAUGUGCUGCUGUGUGAUUUUGUGUUUUUCAGAGAGGAAUUC ie_up
ENSG00000130414:-:2:239990073:240022340 ENSG00000130414 ENST00000678188 - 2 239989874 239990083 210 GUUCAGAGAGGUAAGACUGUGGAAAUGGAGAAAGCUGGCCAGUGGAUGAGUCUGCAGCACCUGGGGACAAUGCAGUCACUUCUCCAGAAAGGAGUUUUUGUUGUUGCUGUGUUUUGUUUGUUUUAGUGAAGGAGCCUCUUUUUCAUUGAAAUAAUUCUCCCUUUUCCCCGUAUUUCUGUGUGGAAAGCUGAUGAAGUCCUCAGAUGACAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 5 314 0.0014789253 0.0004564992 1.695865 GACAGA GACAGA
AGO1 9 548 0.0024648755 0.0007956130 1.631376 GAGGUA,GUAGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBM28 12 822 0.0032043382 0.0011926949 1.425801 AGUAGA,UGUAGA,UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PTBP2 3 267 0.0009859502 0.0003883867 1.344021 CUCUCU CUCUCU
RALY 22 1553 0.0056692137 0.0022520629 1.331902 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
CPEB4 11 821 0.0029578506 0.0011912456 1.312078 UUUUUU UUUUUU
DDX19B 11 821 0.0029578506 0.0011912456 1.312078 UUUUUU UUUUUU
EIF4A3 11 821 0.0029578506 0.0011912456 1.312078 UUUUUU UUUUUU
SRP14 11 847 0.0029578506 0.0012289250 1.267152 CCUGUA,CGCCUG,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
CPEB2 30 2261 0.0076411141 0.0032780993 1.220923 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 27 2062 0.0069016515 0.0029897078 1.206937 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
ELAVL3 36 2867 0.0091200394 0.0041563169 1.133734 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
U2AF2 18 1477 0.0046832635 0.0021419234 1.128607 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
ESRP1 1 156 0.0004929751 0.0002275250 1.115490 AGGGAU AGGGAU
HNRNPA1L2 3 314 0.0009859502 0.0004564992 1.110902 AUAGGG,UAGGGA,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
A1CF 19 1642 0.0049297510 0.0023810421 1.049922 AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UCAGUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NONO 1 11 0.09090909 0.0007859576 6.853829 GAGAGG AGAGGA,AGGAAC,GAGGAA
SRSF7 4 128 0.22727273 0.0084490438 4.749493 AGAGAG,GAGAGA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF10 5 160 0.27272727 0.0105449306 4.692837 AGAGAG,GAGAGA,GAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SFPQ 3 153 0.18181818 0.0100864553 4.172005 AGAGAG,GAGAGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF2 3 479 0.18181818 0.0314383023 2.531901 GAGAGA,GAGAGG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 2 65 0.007142857 0.0003325272 4.424957 GACAGA GACAGA
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM42 1 103 0.004761905 0.0005239823 3.183949 ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
ERI1 3 228 0.009523810 0.0011537686 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
NONO 5 364 0.014285714 0.0018389762 2.957598 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPA3 4 349 0.011904762 0.0017634019 2.755106 AAGGAG,AGGAGC,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
CELF5 7 669 0.019047619 0.0033756550 2.496371 GUGUGG,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SSB 5 505 0.014285714 0.0025493753 2.486358 UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CSTF2 11 1022 0.028571429 0.0051541717 2.470761 GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
CELF4 7 776 0.019047619 0.0039147521 2.282618 GUGUGG,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM24 8 888 0.021428571 0.0044790407 2.258274 AGAGUG,GAGUGG,GUGUGA,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
FXR2 6 730 0.016666667 0.0036829907 2.178016 AGACAG,GACAGA,GGACAA,GGACAG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GAAGGA AAGGAA,GAAGGA,GGGGGG
CELF1 8 1097 0.021428571 0.0055320435 1.953651 GUUUGU,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF6 8 1196 0.021428571 0.0060308343 1.829106 GUGGGG,GUGGUG,GUGUGG,UGUGAU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF2 5 881 0.014285714 0.0044437727 1.684716 GUUGUU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUAAUU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AGACAG,GGACAG,UAGACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RC3H1 3 631 0.009523810 0.0031841999 1.580608 UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUGUU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 GGAUAG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACU,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAGAGG,AGAAAG,AGAGGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUGUU,GUUUUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUAAG,ACUAAU,CAGUCA,UACUAA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 AGGAGU,GGAGAA,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AAGGAG,AGGAAC,AGGAGC,GAAGGA,GGAACC,GGAGCC,UAGACA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AGGUAA,AGGUUU,GAGGUU,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
TIA1 21 5140 0.052380952 0.0259018541 1.015987 AUUUUG,AUUUUU,CUUUUC,CUUUUU,GUUUUA,GUUUUG,GUUUUU,UAUUUU,UUCUCC,UUUUAU,UUUUGU,UUUUUA,UUUUUC,UUUUUG AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 AAAUAA,AAUAAA,AGAUAA,AUAAAG,AUUAAA,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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