ENSG00000156860:+:16:30664214:30666541

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000156860:+:16:30664214:30666541 ENSG00000156860 ENST00000356166 + 16 30664215 30666541 748 CUCUUCACGGCCGCCCCCCAAGGCCCCGGCCCCUCCCGUGGCUCAGCCUCCCCCCUCAUCAUCCUCUUCGUCCUCCUCCUCCUCAUCUGCCUCCUCCUCGUCCGCGCAGCUCACCCACCGGCCCCCGACGCCCUCACUGCCCCUGCCUUUGUCCACCCACAGCUUUCCCCCUCCCGGGCUGCGGCCCCCCCCACCACCCCACCACCCCUCCUUGUUCUCCCCUGGCCCCACCCUGCCCCCACCCCCACCCCUGCUGCAGGUGCCAGGGCACCCUGGGGCCUCAGCCGCUAACGCCCUUUCUGAGCAGGACCUGAUCGGCCAGGACCUGAACUCUCGCUACCUGAAUGCCCAGGGUGGCCCUGAGGUGGUGGGGGCAGGGGGCUCGGCCCGGCCCCUGGCCUUCCAGUUCCACCAGCACAACCACCAGCACCAGCACACCCACCAGCACACCCACCAGCACUUCACCCCUUAUCCCCCGGGCCUGCUGCCACCCCACGGCCCCCACAUGUUUGAGAAAUAUCCAGGAAAGAUGGAAGGCCUUUUCCGACAUAAUCCGUACACGGCCUUCCCUCCCGCAGUGCCCGGGCUGCCUCCGGGCCUCCCGCCGGCCGUCUCCUUUGGCUCCCUGCAGGGGGCCUUCCAGCCCAAGAGCACGAACCCUGAGCUGCCACCACGACUGGGGCCGGUGCCGAGCGGGCUCUCCCAGAAGGGGACACAGAUCCCCGACCAUUUCCGGCCACCUUUGAGGCUCUUCACGGCCGCCCCCCAAGGCCCCGGCCCCUCCCGUGGCUCAGCCUC circ
ENSG00000156860:+:16:30664214:30666541 ENSG00000156860 ENST00000356166 + 16 30664215 30666541 22 CACCUUUGAGGCUCUUCACGGC bsj
ENSG00000156860:+:16:30664214:30666541 ENSG00000156860 ENST00000356166 + 16 30664015 30664224 210 GGGAGAAAUAGGGGUUGCUGGGUGUGGGAGGCGCCUCAGUCUGAGAACGGAUUCCCUCGGUGGGGGGCGGUCCUGGGGCUGGGUUCUGCCACCUCCCGUGUUGGAGAACCAGGGUCACGGUAUCACCCAGGCUUCUGACCCCCUCCCGUCAGAGCUGGCACCUCCCAACCCCUCACUCAUCUCCCCACUUCUCUCCCCAGCUCUUCACGG ie_up
ENSG00000156860:+:16:30664214:30666541 ENSG00000156860 ENST00000356166 + 16 30666532 30666741 210 ACCUUUGAGGGUGAGUUGUGUGAGGACCUCAGGCUGCAUGAGGCUGGGGGCUGGUGUUAGCAUGUUUGGCUAAGGGGGGUUUUGCUUACAAAUAAGUGAGAAGCCCAGAACAUGGAGGCAGCCAGAUGUGGAACAGCAGAGAGUGAGGGCUUUCAAGUUGCAGACCUGGGCUCGGAUGGAACUGGCCAUGGGACCUUGGGCAAGGCAGUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 199 0.002673797 0.0002898408 3.205557 CCGCCC CCGCCC
G3BP1 89 14282 0.120320856 0.0206989801 2.539255 ACCCAC,ACCCCC,ACCCCU,ACCGGC,ACGCCC,AGGCCC,AUCGGC,CACCGG,CCACAG,CCACCC,CCACCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCCAC,CCCCCA,CCCCCC,CCCCCG,CCCCGG,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUCC,CCGCAG,CCGCCC,CCGCCG,CCGGCC,CCUCCG,CGGCCC,CGGCCG,CUCGGC,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
YBX1 32 7119 0.044117647 0.0103183321 2.096146 AACCAC,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAUCAU,CAUCUG,CCACCA,CCAGCA,CCCUGC,CUGCGG,GCCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
IFIH1 3 904 0.005347594 0.0013115296 2.027639 GGCCCU,GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
HNRNPK 38 9304 0.052139037 0.0134848428 1.951025 ACCCCA,ACCCCC,CCCCAA,CCCCAC,CCCCCA,CCCCCC,CCCCCU,CCCCUU,GCCCAA,GCCCAG,GCCCCC,GCCCCU,UCCCCC,UCCCCU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
AGO1 1 548 0.002673797 0.0007956130 1.748751 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PCBP2 39 11045 0.053475936 0.0160079069 1.740105 AACCCU,CCCCCA,CCCCCC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CCUCCU,CCUUCC,CUCCCA,CUCCCC,CUCCCU,CUUCCA,CUUCCC AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
IGF2BP1 2 831 0.004010695 0.0012057377 1.733936 AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PCBP1 47 13384 0.064171123 0.0193975949 1.726046 CACCCU,CCACCC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,CCUUCC,CCUUUC,CUUCCC,CUUUCC AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPU 5 1965 0.008021390 0.0028491350 1.493328 CCCCCC AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHSRP 43 15466 0.058823529 0.0224148375 1.391939 AGCCUC,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCUUCC,CGCCCU,CGGCCU,CUCCCU,CUCCUU,CUGCCU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UCCCUC,UGCCUC ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
RBM6 2 1054 0.004010695 0.0015289102 1.391349 AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
NOVA1 10 3872 0.014705882 0.0056127669 1.389609 ACCACC,AGCACC,AUCAUC,CCCCCC AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PPRC1 1 780 0.002673797 0.0011318283 1.240235 CCGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
HNRNPLL 8 3534 0.012032086 0.0051229360 1.231844 CACACC,CACCAC,CACUGC,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX1 4 287 0.011904762 0.0014510278 3.036392 AGCAUG,GCAUGA,GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 GGGGGG AAGGAA,GAAGGA,GGGGGG
EIF4B 2 226 0.007142857 0.0011436921 2.642803 CUCGGA,GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF4 5 776 0.014285714 0.0039147521 1.867580 GGUGUG,GGUGUU,GUGUGG,GUGUUG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF6 8 1196 0.021428571 0.0060308343 1.829106 GUGAGG,GUGGGG,GUGUGG,GUGUUG,UGUGAG,UGUGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM24 5 888 0.014285714 0.0044790407 1.673311 AGAGUG,GAGUGA,GUGUGA,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CUGGCA,CUGGCC,GCUGGC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGG,GUGUUG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPH2 18 3198 0.045238095 0.0161174929 1.488911 AAGGGG,AUGUGG,CUGGGG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,GGGUGU,UGGGGG,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH3 13 2496 0.033333333 0.0125806127 1.405763 AUGUGG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,GGGUGU,UGGGUG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
HNRNPH1 18 3406 0.045238095 0.0171654575 1.398030 AAGGGG,AUGUGG,CUGGGG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,GGGUGU,UGGGGG,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 GGAGAA,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
CELF1 5 1097 0.014285714 0.0055320435 1.368689 GUGUUG,GUUGUG,UGUGUG,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
HNRNPF 16 3360 0.040476190 0.0169336961 1.257177 AAGGGG,AUGGGA,AUGUGG,CUGGGG,GGAUGG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,GGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUG,GUUUUG,UGUGUG,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUGUG,GUUUUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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