ENSG00000015133:-:14:91305764:91309986

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000015133:-:14:91305764:91309986 ENSG00000015133 ENST00000389857 - 14 91305765 91309986 621 GACCUGGUGCUCGAGAAGCUGAAGAGCCAGCAGCUCAGCAGUGAGCUGGACAAGCUGAGCCAGGAACUGGAGAAGGUCGGCCUCAACAGGGAGCUGCUGUUGCAGGAGGACGACAGCGGCAGUGACACAAAAUACAAGAUUUUGGAGGGCAGAAAUGAAUCAGCAUUAAAAACAACACUAGCCAUGAAAGAAGAAAAGAUUGUGCUCUUAGAAGCACAGAUGGAAGAGAAAGCGAGCCUAAAUCGCCAGUUAGAGAGUGAGCUGCAGAUGCUAAAGAAGGAGUGUGAGACCCUCAGGCAGAACCAGGGAGAGGGGCAGCACUUGCAGAACUCUUUCAAGCACCCUGCGGGGAAGACAGCCGCCAGUCACCAGGGGAAGGAGGCCUGGGGGCCCGGCCAUAAGGAAGCCACCAUGGAGCUUCUCCGAGUGAAGGACCGGGCCAUCGAGCUGGAGCGGAAUAAUGCAGCUCUGCAGGCUGAGAAGCAGCUGCUAAAGGAACAGCUGCAGCACCUGGAGACCCAGAACGUGACCUUCAGCAGCCAGAUCUUGACACUGCAGAAACAGAGCGCCUUCCUGCAGGAGCACAACACCACACUGCAGACCCAGACCGCCAAGCUGCAGGACCUGGUGCUCGAGAAGCUGAAGAGCCAGCAGCUCAGCAGUGAGCUGGA circ
ENSG00000015133:-:14:91305764:91309986 ENSG00000015133 ENST00000389857 - 14 91305765 91309986 22 CCAAGCUGCAGGACCUGGUGCU bsj
ENSG00000015133:-:14:91305764:91309986 ENSG00000015133 ENST00000389857 - 14 91309977 91310186 210 UUCAGCACCAGGAGGGCUGGACAAGUGCAUUCAUUGGCUUUCCUCGGGAAGAGCAUCCCUGGGGUUCAGAGUCCCCUCGCUCCACACGGAGGCAGCCGUGGCCCGGGAGGACAGUUGCUCACACCCGGGCGGGACUGGCGCCUGGCCUUCCUGCGUGUUUUGCUGAGCUCCUAUCCAGUGCUCUCUCCCCAUCAUUCCAGGACCUGGUGC ie_up
ENSG00000015133:-:14:91305764:91309986 ENSG00000015133 ENST00000389857 - 14 91305565 91305774 210 CAAGCUGCAGGUGAGCGGGGCUCCCAACACCAGUGGUCACAAGCCUGGCGGGAUGUUUAUCUGUGGCUCCUGGGGACCAACUGGGGGCAUUAGGACUCCUCAAAAGCAGCAGAUCAAAGCACAAAGCAGUUUGGGAUUUUGUUAAUAGAGACCCGCUGUAAACAGUGAUCAGUGAAGGGGGUGAUAGUUUUUAAGCCAUUUUCAGUGAUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP1 5 831 0.009661836 0.0012057377 3.002381 AAGCAC,AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPM 5 999 0.009661836 0.0014492040 2.737037 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
FXR1 1 411 0.003220612 0.0005970720 2.431358 ACGACA ACGACA,ACGACG,AUGACA,AUGACG
SRSF11 2 688 0.004830918 0.0009985015 2.274461 AAGAAG AAGAAG
RBMY1A1 1 489 0.003220612 0.0007101099 2.181221 ACAAGA ACAAGA,CAAGAC
SNRPB2 2 991 0.004830918 0.0014376103 1.748625 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM24 6 2357 0.011272142 0.0034172229 1.721865 AGAGUG,AGUGUG,GAGUGA,GAGUGU,GUGUGA AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
TUT1 1 678 0.003220612 0.0009840095 1.710591 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ZC3H10 2 1053 0.004830918 0.0015274610 1.661162 GAGCGC,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
HNRNPLL 9 3534 0.016103060 0.0051229360 1.652292 ACACCA,ACCACA,ACGACA,ACUGCA,CACCAC,CACUGC,GACGAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
MATR3 1 739 0.003220612 0.0010724109 1.586477 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 3 1480 0.006441224 0.0021462711 1.585503 AACAAC,ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NONO 3 1498 0.006441224 0.0021723567 1.568074 AGGAAC,GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPN1 2 1222 0.004830918 0.0017723764 1.446612 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBMX 11 4925 0.019323671 0.0071387787 1.436620 AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PABPC3 2 1234 0.004830918 0.0017897669 1.432526 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SSB 2 1260 0.004830918 0.0018274462 1.402468 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 2 1283 0.004830918 0.0018607779 1.376391 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPA3 4 2140 0.008051530 0.0031027457 1.375717 AAGGAG,AGGAGC,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 4 2150 0.008051530 0.0031172377 1.368995 GGGAAG,GGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPA2B1 19 8607 0.032206119 0.0124747476 1.368324 AAGAAG,AAGGAA,AAGGAG,AGAAGC,AGGAAC,AGGAGC,AGGGGC,GAAGCC,GAAGGA,GCCAAG,GGGGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
TRA2B 16 7329 0.027375201 0.0106226650 1.365724 AAAGAA,AAGAAG,AAGGAA,AGAAGA,AGAAGG,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF4 7 3740 0.012882448 0.0054214720 1.248650 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SRSF5 17 8869 0.028985507 0.0128544391 1.173065 AACAGC,AAGAAG,AGAAGA,AGGAAG,CAACAG,CACAGA,GAAGAA,GGAAGA,UAAAGG,UGCAGA,UGCAGC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
HNRNPL 9 5085 0.016103060 0.0073706513 1.127471 AAACAA,AAAUAC,AAUACA,ACACAA,ACACCA,ACCACA,CACAAA,CACAAC,CACCAC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
TRA2A 12 6871 0.020933977 0.0099589296 1.071784 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF10 25 13860 0.041867955 0.0200874160 1.059554 AAAAGA,AAAGAA,AAAGGA,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGGAA,AAGGAG,AGAGAA,AGAGAG,AGAGGG,GAAAGA,GAGAAA,GAGAAG,GAGACC,GAGAGG,GAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
LIN28A 7 4315 0.012882448 0.0062547643 1.042379 AGGAGU,GGAGAA,GGAGGA,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
MSI1 4 2770 0.008051530 0.0040157442 1.003596 AGGAAG,AGGAGG,AGUUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPH2 1 80 0.09090909 0.005305214 4.098942 CAGGAC AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 CAGGAC AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SFPQ 2 153 0.13636364 0.010086455 3.756968 AGGACC,UGCAGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF9 1 134 0.09090909 0.008842023 3.361976 AGGACC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 2 625 0.13636364 0.041000786 1.733736 AGGACC,GCAGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP1 3 173 0.009523810 0.0008766626 3.441445 AAGCAC,AGCACC,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ACO1 5 325 0.014285714 0.0016424829 3.120623 CAGUGA,CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
SAMD4A 7 790 0.019047619 0.0039852882 2.256855 CGGGAA,CGGGAC,CUGGAC,CUGGCC,GCGGGA,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
SRP14 1 218 0.004761905 0.0011033857 2.109602 CGCCUG CCUGUA,CGCCUG,CUGUAG,GCCUGU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUCAGU,GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
FXR2 3 730 0.009523810 0.0036829907 1.370661 GACAAG,GGACAA,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPH2 16 3198 0.040476190 0.0161174929 1.328446 AAGGGG,CAGGAC,CGGGCG,CUGGGG,GAAGGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGGG,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGGACA,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPH1 16 3406 0.040476190 0.0171654575 1.237565 AAGGGG,CAGGAC,CGGGCG,CUGGGG,GAAGGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGGG,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 AACACC,AGCACC,AUUCAU,CAUUCA,UCAUUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPF 15 3360 0.038095238 0.0169336961 1.169714 AAGGGG,CGGGAU,CUGGGG,GAAGGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGAUG,GGGCUG,GGGGCU,GGGGGC,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
YBX1 5 1321 0.014285714 0.0066606207 1.100845 ACACCA,CACACC,CAUCAU,CCACAC,CCUGCG AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 CGGAGG,GGAGGA,GGAGGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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