ENSG00000102606:+:13:111217678:111233293

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000102606:+:13:111217678:111233293 ENSG00000102606 ENST00000317133 + 13 111217679 111233293 291 GACAUGACCGAUAAUAGCAACAAUCAACUGGUAGUAAGAGCAAAGUUUAACUUCCAGCAGACCAAUGAGGACGAGCUUUCCUUCUCAAAAGGAGACGUCAUCCAUGUCACCCGUGUGGAAGAGGGAGGCUGGUGGGAGGGCACACUCAACGGCCGGACCGGCUGGUUCCCCAGCAACUACGUGCGCGAGGUCAAGGCCAGCGAGAAGCCUGUGUCUCCCAAAUCAGGAACACUGAAGAGCCCUCCCAAAGGAUUUGAUACGACUGCCAUAAACAAAAGCUAUUACAAUGUGGACAUGACCGAUAAUAGCAACAAUCAACUGGUAGUAAGAGCAAAGUUUAA circ
ENSG00000102606:+:13:111217678:111233293 ENSG00000102606 ENST00000317133 + 13 111217679 111233293 22 AUUACAAUGUGGACAUGACCGA bsj
ENSG00000102606:+:13:111217678:111233293 ENSG00000102606 ENST00000317133 + 13 111217479 111217688 210 GUGAAGAGGGUGUCCUCUGGGGCUGGAGUGGUGCUGGUGGUGGUCAUGGGGCACUGGAAGGGAGGAAACUGAAAUUUCUCUAAAUGUAUUUCUACUGUUGGGCAAUUAUGCUACCUUUGUACUAGUAAAGUAUAAUCCAUUUUAUAAUGAAGUAGACUGUUCUUGGUAUAAUUUUUCUCCCACUCUUCUUCCCCUUUUAGGACAUGACCG ie_up
ENSG00000102606:+:13:111217678:111233293 ENSG00000102606 ENST00000317133 + 13 111233284 111233493 210 UUACAAUGUGGUGAGUAAUUGCAGAACAUUUUUAAACUAACUGGUUUUUGACUGCCUGUAAAACUCAGCAAUGUAGAAUGUAGUGUAAAGUACCUAGAAUAGGAAGAAGGAAAUAAAGUUCAUUCAUCUGCCACACAAAUGUAACCACCAUUAAGGUUUUGGUCUGUUUCCUUCUAAUCUCUGUAUUUUUGUAAUUGUAUGUUUUUGUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 2 407 0.010309278 0.0005912752 4.123970 AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
AGO1 3 548 0.013745704 0.0007956130 4.110770 GGUAGU,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ANKHD1 1 339 0.006872852 0.0004927293 3.802042 AGACGU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM8A 2 611 0.010309278 0.0008869128 3.539007 GUGCGC,UGCGCG ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
IGF2BP1 2 831 0.010309278 0.0012057377 3.095955 ACCCGU,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ZC3H10 2 1053 0.010309278 0.0015274610 2.754736 CAGCGA,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
SRP14 1 847 0.006872852 0.0012289250 2.483512 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBM6 1 1054 0.006872852 0.0015289102 2.168405 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM3 3 2152 0.013745704 0.0031201361 2.139300 AUACGA,GAGACG,GAUACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM4 4 3065 0.017182131 0.0044432593 1.951219 CCUUCU,GCGCGA,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
SNRNP70 1 1237 0.006872852 0.0017941145 1.937637 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF5 1 1415 0.006872852 0.0020520728 1.743827 GUGUGG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
NONO 1 1498 0.006872852 0.0021723567 1.661648 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
IGF2BP3 5 4815 0.020618557 0.0069793662 1.562775 AAAUCA,ACAAUC,ACACUC,CAAUCA,CACUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ZCRB1 1 1605 0.006872852 0.0023274215 1.562176 GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
G3BP2 1 1644 0.006872852 0.0023839405 1.527561 AGGAUU AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
CELF4 1 1782 0.006872852 0.0025839306 1.411342 GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 1 1782 0.006872852 0.0025839306 1.411342 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RC3H1 1 1786 0.006872852 0.0025897275 1.408109 CCUUCU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
MSI1 2 2770 0.010309278 0.0040157442 1.360204 AGUAAG,UAGUAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
KHDRBS2 1 1858 0.006872852 0.0026940701 1.351122 AUAAAC AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
IGF2BP2 8 8408 0.030927835 0.0121863560 1.343639 AAAUCA,ACAAUC,ACACUC,CAAAUC,CAAUCA,CACUCA,GAACAC,GCACAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
SAMD4A 3 3992 0.013745704 0.0057866714 1.248175 CUGGUA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPA3 1 2140 0.006872852 0.0031027457 1.147364 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
FXR2 2 3434 0.010309278 0.0049780156 1.050301 GACGAG,GGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBM24 1 2357 0.006872852 0.0034172229 1.008085 GUGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ENOX1 1 26 0.09090909 0.001768405 5.683904 UGGACA AAGACA,AGACAG,AGGACA,AGUACA,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,UAGACA,UGGACA
HNRNPH3 1 61 0.09090909 0.004060781 4.484596 AUGUGG AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
SRSF6 1 68 0.09090909 0.004519256 4.330267 UGUGGA AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
HNRNPH2 1 80 0.09090909 0.005305214 4.098942 AUGUGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPF 1 90 0.09090909 0.005960178 3.930997 AUGUGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 AUGUGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
SRSF7 1 128 0.09090909 0.008449044 3.427565 UGGACA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF1 1 625 0.09090909 0.041000786 1.148773 UGGACA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
SRP14 2 218 0.007142857 0.0011033857 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGA,UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SRSF4 5 558 0.014285714 0.0028164047 2.342647 AAGAAG,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBM6 1 191 0.004761905 0.0009673519 2.299426 AAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
A1CF 4 598 0.011904762 0.0030179363 1.979904 AGUAUA,AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZRANB2 10 1360 0.026190476 0.0068571141 1.933369 AGGUUU,GGUGGU,GUAAAG,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TRA2B 9 1447 0.023809524 0.0072954454 1.706471 AAGAAG,AAGGAA,AGAAGG,AGGAAA,AGGAAG,GAAGAA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUCUU,UGUUCU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAGAAG,AAGAGG,AGGAAG,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
YBX1 7 1321 0.019047619 0.0066606207 1.515882 AACCAC,ACCACC,CAGCAA,CAUCUG,CCACAC,CCACCA,GGUCUG AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
AGO2 3 677 0.009523810 0.0034159613 1.479247 UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUAAC,CUAAUC,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM4 5 1094 0.014285714 0.0055169287 1.372636 CCUUCU,CUUCUU,UCCUUC,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
RBMX 6 1316 0.016666667 0.0066354293 1.328704 AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PUM2 3 764 0.009523810 0.0038542926 1.305073 UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBM5 11 2359 0.028571429 0.0118903668 1.264780 AAGGAA,AGGGAG,AGGGUG,CUCUUC,GAAGGA,GAAGGG,GAGGGU,GGUGGU,UCUUCU,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
SRSF5 7 1578 0.019047619 0.0079554615 1.259593 AAGAAG,AGGAAG,AUAAAG,GAAGAA,GAGGAA,GGAAGA,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
SAMD4A 3 790 0.009523810 0.0039852882 1.256855 CUGGAA,GCUGGA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPH3 11 2496 0.028571429 0.0125806127 1.183371 AAGGGA,AAUGUG,AUGUGG,GAAGGG,GAAUGU,GGAAGG,GGAGGA,GGGAGG,GGGCUG,GGGGCU,GGGUGU AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CAUUUU,CCUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUAUGU,GUCUGU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 AUUUUU,UUUUUA,UUUUUC,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG UUUUUC,UUUUUG,UUUUUU
HNRNPF 14 3360 0.035714286 0.0169336961 1.076604 AAGGGA,AAUGUG,AGGAAG,AUGGGG,AUGUGG,CUGGGG,GAAGGG,GAAUGU,GAGGAA,GGAAGG,GGAGGA,GGGAGG,GGGCUG,GGGGCU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 14 3406 0.035714286 0.0171654575 1.056993 AAGGGA,AAUGUG,AGGAAG,AUGUGG,CUGGGG,GAAGGG,GAAUGU,GAGGAA,GGAAGG,GGAGGA,GGGAGG,GGGCUG,GGGGCU,GGGUGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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