ENSG00000131467:+:17:42837648:42839380

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000131467:+:17:42837648:42839380 ENSG00000131467 ENST00000545225 + 17 42837649 42839380 441 CCCACUUAUAAGAAGCGAAGGUUGGAUGAGUGUGAAGAAGCCUUCCAAGGAACCAAGGUGUUUGUGAUGCCCAAUGGGAUGCUGAAAAGCAACCAGCAGCUGGUGGACAUUAUUGAGAAAGUGAAACCUGAGAUCCGGCUGUUGAUUGAGAAAUGUAACACGGUCAAAAUGUGGGUACAGCUCCUGAUUCCCAGGAUAGAAGAUGGAAACAACUUUGGGGUGUCCAUUCAGGAGGAAACAGUUGCAGAGCUAAGAACUGUUGAGAGUGAAGCUGCAUCUUAUCUGGACCAGAUUUCUAGAUAUUAUAUUACAAGAGCCAAAUUGGUUUCUAAAAUAGCUAAAUAUCCCCAUGUGGAGGACUAUCGCCGCACCGUGACAGAGAUUGAUGAGAAAGAAUAUAUCAGCCUUCGGCUCAUCAUAUCAGAGCUGAGGAAUCAAUAUCCCACUUAUAAGAAGCGAAGGUUGGAUGAGUGUGAAGAAGCCUUCCAAGG circ
ENSG00000131467:+:17:42837648:42839380 ENSG00000131467 ENST00000545225 + 17 42837649 42839380 22 GGAAUCAAUAUCCCACUUAUAA bsj
ENSG00000131467:+:17:42837648:42839380 ENSG00000131467 ENST00000545225 + 17 42837449 42837658 210 UGCUGGGAUUACAGGCAUGAGCCACCGCGCCUUGCCUCCAAUAACCUUUCUUAAAGCUUUGUAUGUACUUAGGAAAUUGUGCAGAAAUUAAUAACAUAAGCUAUGAGGCUGAGGAAGGGAUUAAACUUGCUUGAAGGGUAUCUUGUGAUGGAGAUGUGGGUGUCAAAACUAGGCUCAUCCCUGCCUCUUUGUAUCCUUAGCCCACUUAUA ie_up
ENSG00000131467:+:17:42837648:42839380 ENSG00000131467 ENST00000545225 + 17 42839371 42839580 210 GAAUCAAUAUGUGAGUAAUCUCAGUCCUUGUCCAUAGUUGCUGUGGCUUCUCUUAGUUCUGUUGAGAGUAUUGUUAAAAUUCUCUGAAGGGCUGAGAUGAGGGUCUGAGGUAAAAUGAAUAGACCAAAUUCUAUUCAUCACCUGAGUGUUGAGAACCAUGAAGUCAUCUAGCAGGGUAUCUCUCUUUUUUCUACCUGAGUGGAGGGGUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 286 0.004535147 0.0004159215 3.446766 AACCUG AACCUG
CNOT4 1 314 0.004535147 0.0004564992 3.312465 GACAGA GACAGA
AKAP1 1 426 0.004535147 0.0006188101 2.873581 AUAUAU AUAUAU,UAUAUA
HNRNPA0 1 453 0.004535147 0.0006579386 2.785125 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.006802721 0.0009985015 2.768275 AAGAAG AAGAAG
RBMY1A1 1 489 0.004535147 0.0007101099 2.675035 ACAAGA ACAAGA,CAAGAC
MATR3 2 739 0.006802721 0.0010724109 2.665254 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM24 7 2357 0.018140590 0.0034172229 2.408325 AGAGUG,AGUGUG,GAGUGA,GAGUGU,GUGUGA,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBMS3 3 1283 0.009070295 0.0018607779 2.285244 AAUAUA,AUAUAU,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
NONO 3 1498 0.009070295 0.0021723567 2.061888 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
G3BP2 3 1644 0.009070295 0.0023839405 1.927801 AGGAUA,GGAUAG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC5 4 2400 0.011337868 0.0034795387 1.704181 AGAAAG,AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
YBX2 2 1480 0.006802721 0.0021462711 1.664280 AACAAC,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SNRPB2 1 991 0.004535147 0.0014376103 1.657477 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPM 1 999 0.004535147 0.0014492040 1.645889 AAGGAA AAGGAA,GAAGGA,GGGGGG
TRA2B 13 7329 0.031746032 0.0106226650 1.579431 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,AUAAGA,GAAAGA,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF4 6 3740 0.015873016 0.0054214720 1.549820 AAGAAG,AGAAGA,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPA3 3 2140 0.009070295 0.0031027457 1.547604 CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPA2B1 14 8607 0.034013605 0.0124747476 1.447101 AAGAAG,AAGGAA,AGAAGC,AGAUAU,AGGAAC,CAAGGA,CCAAGG,CGAAGG,GAAGCC,GCGAAG,GGAACC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
EIF4B 1 1179 0.004535147 0.0017100607 1.407102 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF4 2 1782 0.006802721 0.0025839306 1.396545 GGUGUU,GUGUUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPN1 1 1222 0.004535147 0.0017723764 1.355464 AGAAGA AAAAGA,AGAAGA
RBMX 7 4925 0.018140590 0.0071387787 1.345472 AAGAAG,AAGGAA,AUCCCA,AUCCCC,GUAACA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SNRNP70 1 1237 0.004535147 0.0017941145 1.337877 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
TRA2A 10 6871 0.024943311 0.0099589296 1.324590 AAAGAA,AAGAAG,AGAAAG,AGAAGA,GAAAGA,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PUM2 2 1890 0.006802721 0.0027404447 1.311702 UAAAUA,UAGAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SSB 1 1260 0.004535147 0.0018274462 1.311321 GCUGUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CSTF2 2 1967 0.006802721 0.0028520334 1.254121 GUGUUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
QKI 3 2805 0.009070295 0.0040664663 1.157374 ACUUAU,AUCAUA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CELF5 1 1415 0.004535147 0.0020520728 1.144068 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF6 3 2997 0.009070295 0.0043447134 1.061888 GUGAUG,UGUGAU,UGUGGG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPF 13 10561 0.031746032 0.0153064921 1.052433 AAGGUG,AAUGUG,AUGGGA,AUGUGG,GAAGGU,GAGGAA,GGAGGA,GGGAUG,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPK 1 16 0.09090909 0.001113440 6.351329 UCCCAC AAAAAA,ACCCCA,ACCCCC,ACCCGA,CAAACC,CAUACC,CCAACC,CCAUAC,CCCCAC,CCCCCU,CCCCUU,GCCCAC,GCCCAG,UCCCAC
RBMX 1 34 0.09090909 0.002292376 5.309509 AUCCCA AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
SRSF2 1 479 0.09090909 0.031438302 1.531901 UAUCCC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
RBM14 1 53 0.004761905 0.0002720677 4.129501 CGCGCC CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBM8A 1 84 0.004761905 0.0004282547 3.474998 CGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
PPRC1 2 127 0.007142857 0.0006449012 3.469351 CCGCGC,CGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
AGO1 2 283 0.007142857 0.0014308746 2.319604 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AAUUAA,GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM24 4 888 0.011904762 0.0044790407 1.410277 GAGUGG,GAGUGU,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
HNRNPH3 13 2496 0.033333333 0.0125806127 1.405763 AAGGGA,AUGUGG,GAAGGG,GAGGGG,GGAAGG,GGAGGG,GGGCUG,GGGUGU,UGGGUG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
LIN28A 4 900 0.011904762 0.0045395002 1.390933 GGAGAU,GGAGGG,UGGAGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAA,AAUGAA,AUCAAU,AUGAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGAUG,GUGUUG,UGUGAG,UGUGAU,UGUGGG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPH1 15 3406 0.038095238 0.0171654575 1.150102 AAGGGA,AGGAAG,AUGUGG,GAAGGG,GAGGAA,GAGGGG,GGAAGG,GGAGGG,GGGCUG,GGGUGU,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
RBM5 10 2359 0.026190476 0.0118903668 1.139249 AGGGUA,AGGUAA,CUUCUC,GAAGGG,GAGGGU,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 ACCAAA,AGGAAG,AGUGUU,GGAAGG,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
HNRNPH2 13 3198 0.033333333 0.0161174929 1.048338 AAGGGA,AUGUGG,GAAGGG,GAGGGG,GGAAGG,GGAGGG,GGGCUG,GGGUGU,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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