ENSG00000158417:+:2:99360235:99371730

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000158417:+:2:99360235:99371730 ENSG00000158417 MSTRG.18937.2 + 2 99360236 99371730 1515 CACCAAGGAUGACAUUGAUCUUGAUGCCUUGGCUGCAGAAAUAGAAGGAGCUGGUGCUGCCAAAGAACAGGAGCCUCAAAAGUCAAAAGGGAAAAAGAAAAAAGAGAAAAAAAAGCAGGACUUUGAUGAAGAUGAUAUCCUGAAAGAACUGGAAGAAUUGUCUUUGGAAGCUCAAGGCAUCAAAGCUGACAGAGAAACUGUUGCAGUGAAGCCAACAGAAAACAAUGAAGAGGAAUUCACCUCAAAAGAUAAAAAAAAGAAAGGACAGAAGGGCAAAAAACAGAGUUUUGAUGAUAAUGAUAGCGAAGAAUUGGAAGAUAAAGAUUCAAAAUCAAAAAAGACUGCAAAACCGAAAGUGGAAAUGUACUCUGGGAGUGAUGAUGAUGAUGAUUUUAACAAACUUCCUAAAAAAGCUAAAGGGAAAGCUCAAAAAUCAAAUAAGAAGUGGGAUGGGUCAGAGGAGGAUGAGGAUAACAGUAAAAAAAUUAAAGAGCGUUCAAGAAUAAAUUCUUCUGGUGAAAGUGGUGAUGAAUCAGAUGAAUUUUUGCAAUCUAGAAAAGGACAGAAAAAAAAUCAGAAAAACAAGCCAGGUCCUAACAUAGAAAGUGGGAAUGAAGAUGAUGACGCCUCCUUCAAAAUUAAGACAGUGGCCCAAAAGAAGGCAGAAAAGAAGGAGCGCGAGAGAAAAAAGCGAGAUGAAGAAAAAGCGAAACUGCGGAAGCUGAAAGAAAAAGAAGAGUUAGAAACAGGUAAAAAGGAUCAGAGUAAACAAAAGGAAUCUCAAAGGAAAUUUGAAGAAGAAACUGUAAAAUCCAAAGUGACUGUUGAUACUGGAGUAAUUCCUGCCUCUGAAGAGAAAGCAGAGACUCCCACAGCUGCAGAAGAUGACAAUGAAGGAGACAAAAAGAAGAAAGAUAAGAAGAAAAAGAAAGGAGAAAAGGAAGAAAAAGAGAAAGAGAAGAAAAAAGGACCUAGCAAAGCCACUGUUAAAGCUAUGCAAGAAGCUCUGGCUAAGCUUAAAGAGGAAGAAGAAAGACAGAAGAGAGAAGAGGAAGAACGUAUAAAACGGCUUGAAGAAUUAGAAGCCAAGCGUAAAGAAGAGGAACGAUUGGAACAAGAAAAAAGAGAAAGGAAAAAGCAAAAAGAAAAAGAAAGAAAAGAACGCUUGAAAAAAGAAGGGAAACUUUUAACUAAAUCCCAGAGAGAAGCCAGAGCCAGAGCCGAAGCUACUCUUAAACUGCUACAAGCUCAGGGUGUUGAAGUGCCAUCAAAAGACUCUUUGCCAAAGAAGAGGCCAAUUUAUGAAGAUAAAAAGAGGAAAAAAAUACCACAGCAGCUAGAAAGUAAAGAAGUGUCUGAAUCAAUGGAAUUAUGUGCUGCUGUAGAAGUUAUGGAACAAGGAGUACCAGAAAAGGAAGAGACACCACCUCCUGUUGAACCAGGCGGAAGAAGAUACUGAGGAUGCUGGAUUGGAUGAUUGGGAAGCUAUGGCCAGUGAUGAGGAGACAGAAAAAGCACCAAGGAUGACAUUGAUCUUGAUGCCUUGGCUGCAGAAAUAGAAGGAG circ
ENSG00000158417:+:2:99360235:99371730 ENSG00000158417 MSTRG.18937.2 + 2 99360236 99371730 22 GACAGAAAAAGCACCAAGGAUG bsj
ENSG00000158417:+:2:99360235:99371730 ENSG00000158417 MSTRG.18937.2 + 2 99360036 99360245 210 UGUAAUCCAGAAACUUCACUGAAGCAGAUGUAGGGAGGCUGAUAAGUAGAUGUAACUUGUGUUGUAAUGAAAGAACUUGCCAAAUGAUUUUUCUCAUUGUGCUGCUAAUGCAUGAAAAAGGUUAAAAUGAUAAAAUCUAUAUAAAUGAAUGAUUAUUUUGCUUUUAAGUAGCAUUUAGGAUGUUUUUGUUUUCAUUUAAGCACCAAGGAU ie_up
ENSG00000158417:+:2:99360235:99371730 ENSG00000158417 MSTRG.18937.2 + 2 99371721 99371930 210 ACAGAAAAAGGUGAAUACCUCAUAAGCACACACUGAUACAUCCAGUGGUUAUUAGAAAUGAAUGAUAUAUAUUUAAAUGAAUAGUCUUUUGAUUAUGAAAGCCAUAUGAACAUUUCUGGGGAUAGGGAUAAGUCUCUUGUUCUCUCCUUUGCCAUGGUUUCUAAGUCCUCAAGUGGAUCUUCAUUUUGUGAAUGAGUGGUUCCUCAGAAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC4 42 1251 0.028382838 0.0018144033 3.967452 AAAAAA,AAAAAG AAAAAA,AAAAAG
IGHMBP2 21 813 0.014521452 0.0011796520 3.621752 AAAAAA AAAAAA
PABPN1 30 1222 0.020462046 0.0017723764 3.529193 AAAAGA,AGAAGA AAAAGA,AGAAGA
SART3 60 2634 0.040264026 0.0038186524 3.398356 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF11 14 688 0.009900990 0.0009985015 3.309736 AAGAAG AAGAAG
CNOT4 5 314 0.003960396 0.0004564992 3.116960 GACAGA GACAGA
TRA2A 118 6871 0.078547855 0.0099589296 2.979509 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF4 56 3740 0.037623762 0.0054214720 2.794888 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPC5 35 2400 0.023762376 0.0034795387 2.771711 AGAAAA,AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
AGO2 26 1830 0.017821782 0.0026534924 2.747677 AAAAAA,AAAGUG,AAGUGC AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC1 63 4443 0.042244224 0.0064402624 2.713563 AAAAAA,AAAAAC,ACAAAC,AGAAAA,CAAAUA,CUAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2B 99 7329 0.066006601 0.0106226650 2.635465 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SYNCRIP 21 1634 0.014521452 0.0023694485 2.615563 AAAAAA AAAAAA,UUUUUU
SRSF10 167 13860 0.110891089 0.0200874160 2.464780 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAG,GAGACA,GAGAGA,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPU 21 1965 0.014521452 0.0028491350 2.349590 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBMX 48 4925 0.032343234 0.0071387787 2.179715 AAGAAG,AAGGAA,AAGUAA,AAGUGU,AGAAGG,AGGAAG,AUCAAA,AUCCCA,GAAGGA,UAACAA,UAAGAC,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
FXR1 3 411 0.002640264 0.0005970720 2.144705 AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBM46 41 4554 0.027722772 0.0066011240 2.070288 AAUCAA,AAUGAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPM 8 999 0.005940594 0.0014492040 2.035347 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
NONO 12 1498 0.008580858 0.0021723567 1.981861 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPD 23 2837 0.015841584 0.0041128408 1.945509 AAAAAA,AAUUUA,AUUUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
TUT1 4 678 0.003300330 0.0009840095 1.745866 AAAUAC,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SRSF5 64 8869 0.042904290 0.0128544391 1.738855 AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UGCAGA,UGCGGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SRSF7 101 14481 0.067326733 0.0209873716 1.681658 AAAGGA,AAGAAG,AAGGAC,AAUGAU,ACGAUU,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGGAAG,AGGACA,AUAGAA,AUUGAU,CAGAGA,CGAGAG,CGAGAU,CGAUUG,GAAGAA,GAAGGC,GAAUGA,GACAAA,GAGACU,GAGAGA,GAGGAA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
ZFP36 197 28400 0.130693069 0.0411588414 1.666908 AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAGC,ACAAGG,ACCUCC,ACUUCC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUUUAU,CAAAGA,CAAAUA,CAAGGA,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UCCUGC,UCCUGU,UCCUUC,UCUUCU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
FUS 24 3648 0.016501650 0.0052881452 1.641777 AAAAAA,GGGUGU,UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
G3BP2 10 1644 0.007260726 0.0023839405 1.606766 AGGAUA,AGGAUG,GGAUAA,GGAUGA,GGAUGG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM5 44 6879 0.029702970 0.0099705232 1.574866 AAAAAA,AAGGAA,AAGGAG,AGGGAA,AGGGUG,AGGUAA,CAAGGA,GAAGGA,GAAGGG,UCUUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPA3 13 2140 0.009240924 0.0031027457 1.574492 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
DAZAP1 38 5964 0.025742574 0.0086445016 1.574302 AAAAAA,AAUUUA,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGUAAA,AGUUAG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
PABPC3 7 1234 0.005280528 0.0017897669 1.560911 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 6 1237 0.004620462 0.0017941145 1.364765 AAUCAA,AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPAB 9 1782 0.006600660 0.0025839306 1.353043 AAAGAC,AAGACA,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPA2B1 47 8607 0.031683168 0.0124747476 1.344706 AAGAAG,AAGGAA,AAGGAG,AAUUUA,AGAAGC,AGGAAC,AGGAGC,CAAGAA,CAAGGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAGCC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
RBM3 10 2152 0.007260726 0.0031201361 1.218505 AAAACG,AAGACU,GAAACU,GAGACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
KHDRBS3 16 3429 0.011221122 0.0049707696 1.174676 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBM42 1 407 0.001320132 0.0005912752 1.158781 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
ELAVL4 22 5105 0.015181518 0.0073996354 1.036790 AAAAAA,AUUUAU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPA1 79 18070 0.052805281 0.0261885646 1.011745 AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAUUUA,AGAGGA,AGGAAG,AGGAGC,AGGGCA,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUUAGA,AUUUAU,CAAAGA,CAAGGA,CCAAGG,GAGGAA,GAGGAG,GCCAAG,GGACUU,GGAGCC,GGAGGA,GUGGUG,UGGUGC AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
RBFOX2 1 452 0.001320132 0.0006564894 1.007839 UGACUG UGACUG,UGCAUG
HNRNPA0 1 453 0.001320132 0.0006579386 1.004657 AAUUUA AAUUUA,AGAUAU,AGUAGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP1 2 6 0.13636364 0.0004584752 8.216399 AAGCAC,AGCACC AAGCAC,CACCCG,CCCGUU
NOVA1 1 5 0.09090909 0.0003929788 7.853829 AGCACC ACCACC,CAGUCA,CAUUCA,UCAGUC
NOVA2 1 15 0.09090909 0.0010479434 6.438792 AGCACC ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC
SRSF6 1 68 0.09090909 0.0045192560 4.330267 AGCACC AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
ZFP36 2 126 0.13636364 0.0083180508 4.035070 AAAAGC,AAAGCA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF1 1 625 0.09090909 0.0410007860 1.148773 GCACCA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
HNRNPA1L2 4 188 0.011904762 0.0009522370 3.644074 AUAGGG,GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 4 191 0.011904762 0.0009673519 3.621354 AAUCCA,AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
IGF2BP1 3 173 0.009523810 0.0008766626 3.441445 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
AKAP1 4 221 0.011904762 0.0011185006 3.411901 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 3 217 0.009523810 0.0010983474 3.116204 GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM46 18 1091 0.045238095 0.0055018138 3.039559 AAUGAA,AAUGAU,AUGAAA,AUGAAU,AUGAUA,AUGAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
TARDBP 11 1034 0.028571429 0.0052146312 2.453936 GAAUGA,GUGAAU,UGAAUG,UUGUGC,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AUAUAU,CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGA,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUG,GGAUAA,GGAUAG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAGAU,UACAUC,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAG AAAAAA,AAAAAG
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACACAC,CACACA,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
SART3 3 777 0.009523810 0.0039197904 1.280762 AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUUG,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AUAGGG,AUUUAA,CAAGGA,CCAAGG,GUAGGG,UAGGGA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
QKI 3 904 0.009523810 0.0045596534 1.062615 ACACAC,CACACU,CUCAUA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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