ENSG00000288743

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000686621 ENSG00000288743 HEK293_OSMI2_6hA HEK293_TMG_6hB lncRNA lncRNA 3.985473 4.430806 1.772389 0.622758 0.4802574 -1.317009 2.816274 4.0716059 1.2329794 0.60537241 0.2868057 -1.7153345 0.6868958 0.91646667 0.7096667 -0.2068000 0.00708806 0.00708806   FALSE
MSTRG.8762.1 ENSG00000288743 HEK293_OSMI2_6hA HEK293_TMG_6hB lncRNA   3.985473 4.430806 1.772389 0.622758 0.4802574 -1.317009 1.118530 0.3491172 0.4784265 0.08539347 0.1624569 0.4436865 0.2990167 0.08146667 0.2614000 0.1799333 0.04123524 0.00708806   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000288743 E001 1.9515611 0.033869979 0.4757737360 0.684050621 13 49204645 49204826 182 - 0.509 0.366 -0.754
ENSG00000288743 E002 0.6648197 0.144114776 0.0702252438   13 49205959 49206901 943 - 0.430 0.074 -3.186
ENSG00000288743 E003 2.7592757 0.016151706 0.0003946137 0.004679129 13 49234887 49235048 162 - 0.853 0.287 -2.709
ENSG00000288743 E004 26.8110423 0.002010055 0.0566494421 0.195200819 13 49235513 49235961 449 - 1.299 1.404 0.367
ENSG00000288743 E005 25.5778905 0.002699632 0.6299954619 0.790426439 13 49247635 49247852 218 - 1.345 1.367 0.078