ENSG00000278540

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000614428 ENSG00000278540 HEK293_OSMI2_6hA HEK293_TMG_6hB ACACA protein_coding protein_coding 23.41941 28.10184 20.2717 6.753869 0.2783749 -0.4709989 5.5925513 5.56370943 7.6572135 1.28994247 0.36015604 0.4600646 0.25581667 0.199100000 0.37740000 0.17830000 5.564827e-07 1.828045e-17 FALSE TRUE
ENST00000614438 ENSG00000278540 HEK293_OSMI2_6hA HEK293_TMG_6hB ACACA protein_coding protein_coding 23.41941 28.10184 20.2717 6.753869 0.2783749 -0.4709989 1.9351490 1.83495936 2.3702489 1.36765396 0.02355161 0.3675234 0.08033333 0.055066667 0.11696667 0.06190000 7.347474e-01 1.828045e-17 FALSE TRUE
ENST00000616317 ENSG00000278540 HEK293_OSMI2_6hA HEK293_TMG_6hB ACACA protein_coding protein_coding 23.41941 28.10184 20.2717 6.753869 0.2783749 -0.4709989 3.1754880 3.48717542 3.2036703 0.38403152 0.34391923 -0.1219683 0.14182917 0.135300000 0.15843333 0.02313333 8.883660e-01 1.828045e-17 FALSE TRUE
ENST00000619546 ENSG00000278540 HEK293_OSMI2_6hA HEK293_TMG_6hB ACACA protein_coding protein_coding 23.41941 28.10184 20.2717 6.753869 0.2783749 -0.4709989 7.6307996 12.42649792 3.0696345 2.97750420 0.13292351 -2.0137492 0.30059167 0.441633333 0.15146667 -0.29016667 1.828045e-17 1.828045e-17 FALSE TRUE
MSTRG.14206.12 ENSG00000278540 HEK293_OSMI2_6hA HEK293_TMG_6hB ACACA protein_coding   23.41941 28.10184 20.2717 6.753869 0.2783749 -0.4709989 0.3270921 0.06662523 1.1795386 0.06662523 0.43036429 3.9564388 0.01630833 0.002633333 0.05876667 0.05613333 6.532003e-02 1.828045e-17 FALSE TRUE
MSTRG.14206.27 ENSG00000278540 HEK293_OSMI2_6hA HEK293_TMG_6hB ACACA protein_coding   23.41941 28.10184 20.2717 6.753869 0.2783749 -0.4709989 1.7971945 1.23479973 0.5679893 0.69018493 0.33804124 -1.1067990 0.08022917 0.055766667 0.02816667 -0.02760000 9.553298e-01 1.828045e-17 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000278540 E001 0.6839606 0.0188253069 4.461037e-01   17 37084992 37084993 2 - 0.134 0.271 1.269
ENSG00000278540 E002 0.9872031 0.0153787590 1.647659e-01   17 37084994 37084997 4 - 0.134 0.388 2.005
ENSG00000278540 E003 1111.9758567 0.0021353449 6.939512e-18 1.561965e-15 17 37084998 37086816 1819 - 2.903 3.125 0.739
ENSG00000278540 E004 133.6390549 0.0004273206 2.432116e-07 8.193168e-06 17 37086817 37086875 59 - 2.008 2.192 0.618
ENSG00000278540 E005 76.5693989 0.0031484517 5.688061e-05 9.315880e-04 17 37086876 37086879 4 - 1.749 1.964 0.726
ENSG00000278540 E006 150.8519705 0.0003246119 6.044960e-14 7.854424e-12 17 37086880 37087035 156 - 2.015 2.264 0.832
ENSG00000278540 E007 145.1971841 0.0002825671 4.792558e-13 5.230634e-11 17 37087036 37087176 141 - 2.003 2.246 0.813
ENSG00000278540 E008 91.1745880 0.0042823925 2.545187e-05 4.685433e-04 17 37087177 37087221 45 - 1.820 2.045 0.756
ENSG00000278540 E009 139.8649845 0.0004156307 1.499631e-06 4.046906e-05 17 37087222 37087319 98 - 2.037 2.207 0.568
ENSG00000278540 E010 159.9841184 0.0003216098 2.163389e-05 4.083509e-04 17 37087320 37087439 120 - 2.115 2.256 0.472
ENSG00000278540 E011 183.5902657 0.0003673565 2.731877e-03 2.175446e-02 17 37088938 37089074 137 - 2.201 2.300 0.332
ENSG00000278540 E012 199.7388744 0.0002722060 5.809609e-05 9.480208e-04 17 37096996 37097166 171 - 2.221 2.343 0.409
ENSG00000278540 E013 186.7184793 0.0024307413 1.316297e-03 1.228025e-02 17 37097830 37097984 155 - 2.186 2.320 0.446
ENSG00000278540 E014 160.0141726 0.0003666945 3.477076e-04 4.215961e-03 17 37111531 37111643 113 - 2.127 2.249 0.408
ENSG00000278540 E015 175.5247877 0.0004907833 1.318037e-04 1.882891e-03 17 37113088 37113265 178 - 2.161 2.289 0.426
ENSG00000278540 E016 172.0677727 0.0003348266 1.333097e-05 2.691921e-04 17 37121355 37121490 136 - 2.145 2.286 0.472
ENSG00000278540 E017 153.8903423 0.0003953771 1.265789e-04 1.818305e-03 17 37122531 37122627 97 - 2.104 2.236 0.443
ENSG00000278540 E018 0.1426347 0.0317959084 3.858951e-01   17 37122628 37122794 167 - 0.133 0.000 -11.988
ENSG00000278540 E019 126.6952242 0.0004507879 1.220548e-03 1.158620e-02 17 37125698 37125794 97 - 2.026 2.149 0.415
ENSG00000278540 E020 122.3887411 0.0003937250 2.562829e-01 4.950632e-01 17 37129365 37129485 121 - 2.051 2.106 0.181
ENSG00000278540 E021 122.7020596 0.0003305193 2.181814e-01 4.512509e-01 17 37130075 37130218 144 - 2.053 2.109 0.189
ENSG00000278540 E022 108.0685773 0.0006578704 5.593564e-01 7.428530e-01 17 37149864 37149974 111 - 2.008 2.045 0.125
ENSG00000278540 E023 119.6758903 0.0029304920 4.487643e-01 6.648280e-01 17 37151301 37151421 121 - 2.044 2.094 0.168
ENSG00000278540 E024 95.4999963 0.0004385930 6.835515e-01 8.249495e-01 17 37155683 37155780 98 - 1.976 1.977 0.003
ENSG00000278540 E025 0.5657866 0.0292737366 7.982676e-01   17 37161600 37161780 181 - 0.235 0.198 -0.321
ENSG00000278540 E026 190.8278598 0.0003132148 9.755949e-01 9.895994e-01 17 37161781 37162050 270 - 2.263 2.280 0.059
ENSG00000278540 E027 141.0413744 0.0015566511 8.973868e-01 9.505025e-01 17 37179260 37179406 147 - 2.134 2.149 0.050
ENSG00000278540 E028 142.1672683 0.0008382848 9.106626e-01 9.574661e-01 17 37181201 37181356 156 - 2.133 2.153 0.070
ENSG00000278540 E029 68.6871274 0.0039063623 9.923921e-01 9.979069e-01 17 37188277 37188302 26 - 1.826 1.841 0.052
ENSG00000278540 E030 144.4309256 0.0003007323 7.616264e-01 8.736056e-01 17 37188303 37188480 178 - 2.150 2.157 0.023
ENSG00000278540 E031 129.1009635 0.0012040397 5.027139e-01 7.026363e-01 17 37191120 37191275 156 - 2.114 2.107 -0.026
ENSG00000278540 E032 140.6996491 0.0006504015 2.347003e-01 4.705005e-01 17 37192090 37192305 216 - 2.157 2.136 -0.070
ENSG00000278540 E033 61.2348532 0.0011240423 9.660537e-02 2.758111e-01 17 37193374 37193415 42 - 1.821 1.759 -0.207
ENSG00000278540 E034 0.1308682 0.0312003095 6.092160e-01   17 37193416 37193458 43 - 0.000 0.110 10.826
ENSG00000278540 E035 67.8174977 0.0005957751 9.686017e-02 2.762231e-01 17 37200139 37200183 45 - 1.859 1.803 -0.189
ENSG00000278540 E036 43.7494665 0.0008038570 1.983708e-02 9.533512e-02 17 37200427 37200428 2 - 1.702 1.593 -0.369
ENSG00000278540 E037 69.3139717 0.0005300360 7.972543e-03 4.918449e-02 17 37200429 37200483 55 - 1.892 1.795 -0.329
ENSG00000278540 E038 95.9691351 0.0004896136 5.768142e-03 3.858674e-02 17 37205765 37205872 108 - 2.026 1.941 -0.286
ENSG00000278540 E039 97.5549774 0.0019047224 1.881730e-02 9.181467e-02 17 37206783 37206879 97 - 2.031 1.953 -0.264
ENSG00000278540 E040 96.4590330 0.0004520700 2.754090e-02 1.199067e-01 17 37207657 37207729 73 - 2.018 1.953 -0.218
ENSG00000278540 E041 96.7501615 0.0004777571 8.455736e-03 5.140347e-02 17 37207730 37207800 71 - 2.029 1.948 -0.271
ENSG00000278540 E042 42.6284322 0.0076017474 4.337176e-01 6.540309e-01 17 37210467 37210490 24 - 1.596 1.663 0.226
ENSG00000278540 E043 0.9520415 0.1593918274 6.456383e-01   17 37221518 37221723 206 - 0.235 0.334 0.692
ENSG00000278540 E044 103.8901115 0.0004131733 4.587596e-04 5.301301e-03 17 37221724 37221842 119 - 2.073 1.966 -0.360
ENSG00000278540 E045 0.0000000       17 37221985 37222028 44 -      
ENSG00000278540 E046 100.4534710 0.0004182881 5.747814e-03 3.848411e-02 17 37223512 37223601 90 - 2.045 1.962 -0.278
ENSG00000278540 E047 108.5687967 0.0018765271 5.715089e-03 3.831045e-02 17 37224992 37225105 114 - 2.085 1.994 -0.305
ENSG00000278540 E048 0.0000000       17 37225400 37225571 172 -      
ENSG00000278540 E049 104.5001496 0.0004183710 4.134580e-04 4.862513e-03 17 37226339 37226452 114 - 2.074 1.966 -0.364
ENSG00000278540 E050 94.8781443 0.0047520544 2.176567e-03 1.824978e-02 17 37234975 37235099 125 - 2.044 1.909 -0.451
ENSG00000278540 E051 72.5298995 0.0052039679 6.326166e-02 2.100513e-01 17 37240476 37240564 89 - 1.903 1.819 -0.285
ENSG00000278540 E052 87.0050637 0.0065726284 7.001072e-02 2.248294e-01 17 37241953 37242053 101 - 1.975 1.898 -0.260
ENSG00000278540 E053 106.9368919 0.0035572110 8.385420e-02 2.524844e-01 17 37243371 37243559 189 - 2.054 1.996 -0.193
ENSG00000278540 E054 85.7296775 0.0004681114 8.305171e-02 2.508643e-01 17 37244588 37244734 147 - 1.957 1.906 -0.172
ENSG00000278540 E055 82.5029844 0.0004645132 3.745660e-04 4.483361e-03 17 37245080 37245214 135 - 1.981 1.857 -0.418
ENSG00000278540 E056 101.2262064 0.0009854395 3.848319e-04 4.586073e-03 17 37246826 37246976 151 - 2.068 1.950 -0.394
ENSG00000278540 E057 0.0000000       17 37247902 37248010 109 -      
ENSG00000278540 E058 102.5179138 0.0006012719 5.079745e-05 8.435099e-04 17 37248011 37248156 146 - 2.078 1.948 -0.438
ENSG00000278540 E059 61.6200777 0.0092531545 2.885016e-03 2.271510e-02 17 37248593 37248674 82 - 1.884 1.708 -0.592
ENSG00000278540 E060 0.4812263 0.0212646198 7.240171e-01   17 37248675 37248676 2 - 0.134 0.198 0.682
ENSG00000278540 E061 64.1807670 0.0110577298 1.123252e-01 3.030194e-01 17 37252005 37252108 104 - 1.860 1.771 -0.300
ENSG00000278540 E062 89.7159301 0.0005612040 1.957060e-04 2.627844e-03 17 37252886 37253036 151 - 2.018 1.892 -0.424
ENSG00000278540 E063 93.7349064 0.0010496909 8.034142e-09 3.858547e-07 17 37257703 37257866 164 - 2.073 1.864 -0.703
ENSG00000278540 E064 80.5243848 0.0004720614 8.672037e-09 4.134507e-07 17 37258212 37258373 162 - 2.009 1.795 -0.721
ENSG00000278540 E065 78.7095210 0.0006300652 9.320014e-08 3.484704e-06 17 37259360 37259530 171 - 2.000 1.799 -0.677
ENSG00000278540 E066 93.0806901 0.0004537656 2.280949e-06 5.858404e-05 17 37263685 37263894 210 - 2.051 1.892 -0.536
ENSG00000278540 E067 76.2086823 0.0004698811 1.749789e-05 3.409690e-04 17 37270751 37270861 111 - 1.962 1.803 -0.538
ENSG00000278540 E068 44.4812067 0.0008753201 2.423728e-04 3.135798e-03 17 37274193 37274216 24 - 1.743 1.563 -0.612
ENSG00000278540 E069 59.8358571 0.0084099860 6.902657e-06 1.520599e-04 17 37274217 37274299 83 - 1.910 1.638 -0.921
ENSG00000278540 E070 63.8634373 0.0014923522 9.105364e-11 6.516226e-09 17 37275951 37276049 99 - 1.947 1.656 -0.982
ENSG00000278540 E071 52.2121411 0.0010806318 3.617731e-13 4.036622e-11 17 37277033 37277114 82 - 1.884 1.531 -1.196
ENSG00000278540 E072 61.7605285 0.0010443783 8.200652e-18 1.820470e-15 17 37277896 37277987 92 - 1.971 1.580 -1.320
ENSG00000278540 E073 39.6798744 0.0010031343 1.847990e-13 2.180898e-11 17 37277988 37278005 18 - 1.789 1.383 -1.386
ENSG00000278540 E074 69.2710383 0.0033542799 1.636302e-09 9.167986e-08 17 37283267 37283405 139 - 1.983 1.693 -0.978
ENSG00000278540 E075 57.5810614 0.0029667144 3.653008e-06 8.783303e-05 17 37284838 37284970 133 - 1.877 1.648 -0.775
ENSG00000278540 E076 7.1923214 0.0663439756 3.587373e-02 1.438784e-01 17 37289418 37289528 111 - 1.059 0.732 -1.250
ENSG00000278540 E077 0.7260870 0.0615923000 8.017382e-01   17 37299280 37299767 488 - 0.236 0.200 -0.303
ENSG00000278540 E078 24.1902238 0.0112127943 5.351424e-01 7.256888e-01 17 37328645 37328961 317 - 1.348 1.417 0.239
ENSG00000278540 E079 15.2877028 0.0022350052 8.349357e-01 9.164795e-01 17 37328962 37328986 25 - 1.188 1.221 0.117
ENSG00000278540 E080 102.6467146 0.0005041609 8.147987e-06 1.756207e-04 17 37330173 37330335 163 - 2.082 1.938 -0.484
ENSG00000278540 E081 66.9275955 0.0006262807 2.626584e-04 3.351021e-03 17 37330336 37330425 90 - 1.900 1.757 -0.484
ENSG00000278540 E082 40.4256588 0.0009836301 4.525609e-05 7.641966e-04 17 37339804 37339819 16 - 1.720 1.508 -0.721
ENSG00000278540 E083 51.7278238 0.0019234287 9.622441e-05 1.447654e-03 17 37339820 37339850 31 - 1.813 1.624 -0.639
ENSG00000278540 E084 1.3218009 0.0135774768 7.254721e-01   17 37345253 37345382 130 - 0.387 0.334 -0.315
ENSG00000278540 E085 45.5926893 0.0010276782 1.810778e-03 1.577206e-02 17 37358999 37359233 235 - 1.740 1.590 -0.510
ENSG00000278540 E086 0.0000000       17 37360205 37360232 28 -      
ENSG00000278540 E087 0.0000000       17 37360233 37360391 159 -      
ENSG00000278540 E088 1.5896943 0.0154442962 8.129609e-01 9.040038e-01 17 37365443 37365750 308 - 0.387 0.437 0.271
ENSG00000278540 E089 0.4043710 0.1124431119 7.519976e-01   17 37366943 37367060 118 - 0.133 0.196 0.668
ENSG00000278540 E090 0.1308682 0.0312003095 6.092160e-01   17 37367592 37367722 131 - 0.000 0.110 10.826
ENSG00000278540 E091 0.0000000       17 37368699 37368727 29 -      
ENSG00000278540 E092 0.5059767 0.0213026744 1.302552e-01   17 37369370 37369487 118 - 0.000 0.271 12.564
ENSG00000278540 E093 49.5411571 0.0213848907 7.294436e-01 8.538988e-01 17 37406262 37406836 575 - 1.675 1.723 0.162