ENSG00000272556

1 Isoform Switch

Summary Plot
Results

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Rows: 1-7 / 7
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isoform_id
gene_id
condition_1
condition_2
gene_name
gene_biotype
iso_biotype
gene_overall_mean
gene_value_1
gene_value_2
gene_stderr_1
gene_stderr_2
gene_log2_fold_change
iso_overall_mean
iso_value_1
iso_value_2
iso_stderr_1
iso_stderr_2
iso_log2_fold_change
IF_overall
IF1
IF2
dIF
isoform_switch_q_value
gene_switch_q_value
PTC
codingPotential
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isoform_id	gene_id	condition_1	condition_2	gene_biotype	iso_biotype	gene_overall_mean	gene_value_1	gene_value_2	gene_stderr_1	gene_stderr_2	gene_log2_fold_change	iso_overall_mean	iso_value_1	iso_value_2	iso_stderr_1	iso_stderr_2	iso_log2_fold_change	IF_overall	IF1	IF2	dIF	isoform_switch_q_value	gene_switch_q_value	PTC	codingPotential

ENST00000609439	ENSG00000272556	HEK293_OSMI2_6hA	HEK293_TMG_6hB	transcribed_unprocessed_pseudogene	processed_transcript	5.232527	9.711812	2.386011	0.6144024	0.2776638	-2.020591	0.7738164	1.5368289	0.2712526	0.15982226	0.08608416	-2.459375154	0.15048750	0.16120000	0.10823333	-0.05296667	0.72262480	0.00438986	FALSE	TRUE
MSTRG.29832.10	ENSG00000272556	HEK293_OSMI2_6hA	HEK293_TMG_6hB	transcribed_unprocessed_pseudogene		5.232527	9.711812	2.386011	0.6144024	0.2776638	-2.020591	0.1052932	0.0000000	0.1985387	0.00000000	0.19853869	4.382243155	0.03367500	0.00000000	0.07183333	0.07183333	0.67323514	0.00438986	FALSE	TRUE
MSTRG.29832.3	ENSG00000272556	HEK293_OSMI2_6hA	HEK293_TMG_6hB	transcribed_unprocessed_pseudogene		5.232527	9.711812	2.386011	0.6144024	0.2776638	-2.020591	0.2234861	0.3356846	0.1980336	0.05146232	0.07930068	-0.732639782	0.05121667	0.03550000	0.09366667	0.05816667	0.69639948	0.00438986	FALSE	FALSE
MSTRG.29832.5	ENSG00000272556	HEK293_OSMI2_6hA	HEK293_TMG_6hB	transcribed_unprocessed_pseudogene		5.232527	9.711812	2.386011	0.6144024	0.2776638	-2.020591	0.6558016	0.7094527	0.7045083	0.32376697	0.17961979	-0.009949089	0.15727083	0.06956667	0.28436667	0.21480000	0.08552725	0.00438986		FALSE
MSTRG.29832.7	ENSG00000272556	HEK293_OSMI2_6hA	HEK293_TMG_6hB	transcribed_unprocessed_pseudogene		5.232527	9.711812	2.386011	0.6144024	0.2776638	-2.020591	1.1648354	2.5443558	0.3732473	0.11869925	0.09746564	-2.736611813	0.21144583	0.26460000	0.15710000	-0.10750000	0.46970475	0.00438986	TRUE	TRUE
MSTRG.29832.8	ENSG00000272556	HEK293_OSMI2_6hA	HEK293_TMG_6hB	transcribed_unprocessed_pseudogene		5.232527	9.711812	2.386011	0.6144024	0.2776638	-2.020591	0.2193299	0.5555504	0.0000000	0.07438582	0.00000000	-5.821583684	0.03518750	0.05833333	0.00000000	-0.05833333	0.00438986	0.00438986	FALSE	FALSE
MSTRG.29832.9	ENSG00000272556	HEK293_OSMI2_6hA	HEK293_TMG_6hB	transcribed_unprocessed_pseudogene		5.232527	9.711812	2.386011	0.6144024	0.2776638	-2.020591	1.7301138	2.9382344	0.4231575	0.52927090	0.23258042	-2.766887651	0.28915833	0.30243333	0.18930000	-0.11313333	0.80887435	0.00438986	FALSE	FALSE

Note:
- The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

Rows: 1-10 / 42
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featureID
exonBaseMean
dispersion
pvalue
padj
seqnames
start
end
width
strand
HEK293_TMG_6hB
HEK293_OSMI2_6hA
log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
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groupID	featureID	exonBaseMean	dispersion	pvalue	padj	seqnames	start	end	width	strand	HEK293_TMG_6hB	HEK293_OSMI2_6hA	log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB

ENSG00000272556	E001	1.0896167	0.104111264	0.2116697829		7	45769060	45769104	45	+	0.415	0.185	-1.588
ENSG00000272556	E002	8.7000806	0.003987283	0.0039831715	0.029060194	7	45769105	45769467	363	+	1.112	0.776	-1.266
ENSG00000272556	E003	0.1723744	0.055478784	0.8218659072		7	45769468	45769487	20	+	0.000	0.053	8.617
ENSG00000272556	E004	3.8834904	0.014330072	0.0052623038	0.035998766	7	45773564	45773594	31	+	0.912	0.489	-1.782
ENSG00000272556	E005	4.1444866	0.006110334	0.0013454632	0.012501537	7	45773595	45773673	79	+	0.953	0.490	-1.932
ENSG00000272556	E006	4.2127118	0.006699008	0.0614226066	0.205966577	7	45774760	45774891	132	+	0.818	0.542	-1.169
ENSG00000272556	E007	5.9622788	0.077819176	0.0393368079	0.153066809	7	45778187	45778402	216	+	0.954	0.654	-1.192
ENSG00000272556	E008	4.7071097	0.006331101	0.1074458240	0.294787750	7	45779275	45779340	66	+	0.818	0.588	-0.958
ENSG00000272556	E009	4.0611437	0.006837266	0.1433149162	0.352425738	7	45781495	45781553	59	+	0.762	0.542	-0.947
ENSG00000272556	E010	4.3163428	0.006339491	0.3823961296	0.614177998	7	45782645	45782739	95	+	0.698	0.573	-0.538
ENSG00000272556	E011	6.9869559	0.004035811	0.7827240026	0.886246305	7	45782740	45782914	175	+	0.698	0.775	0.316
ENSG00000272556	E012	3.2157675	0.007614103	0.3945048154	0.623971646	7	45783071	45783146	76	+	0.622	0.490	-0.610
ENSG00000272556	E013	0.0000000				7	45783147	45783157	11	+
ENSG00000272556	E014	8.1525453	0.004602316	0.0008298430	0.008525494	7	45788719	45788954	236	+	1.138	0.746	-1.482
ENSG00000272556	E015	5.1279332	0.007864166	0.0006425736	0.006941275	7	45791788	45791852	65	+	1.024	0.557	-1.875
ENSG00000272556	E016	6.5541139	0.022568479	0.0014572903	0.013319058	7	45795075	45795198	124	+	1.084	0.656	-1.660
ENSG00000272556	E017	3.7541583	0.027871657	0.0425121382	0.161269213	7	45797043	45797140	98	+	0.818	0.506	-1.340
ENSG00000272556	E018	5.8166364	0.210317625	0.0581969961	0.198716969	7	45797478	45797506	29	+	0.952	0.647	-1.210
ENSG00000272556	E019	4.6348111	0.178299304	0.1449166767	0.354849921	7	45797507	45797526	20	+	0.821	0.584	-0.988
ENSG00000272556	E020	6.5230483	0.019934675	0.2382606652	0.474622146	7	45797527	45797674	148	+	0.868	0.715	-0.606
ENSG00000272556	E021	4.4573276	0.047764908	0.0126288284	0.068958089	7	45798539	45798603	65	+	0.912	0.528	-1.596
ENSG00000272556	E022	0.0000000				7	45798604	45798707	104	+
ENSG00000272556	E023	1.9345450	0.024382299	0.2060053553	0.437032448	7	45804232	45804350	119	+	0.000	0.388	11.724
ENSG00000272556	E024	2.2377875	0.011400687	0.1411691497	0.349258013	7	45804351	45804481	131	+	0.000	0.432	11.923
ENSG00000272556	E025	11.5413240	0.107114769	0.0900746310	0.263932641	7	45805099	45805289	191	+	1.137	0.904	-0.855
ENSG00000272556	E026	1.9766714	0.149958213	0.8169448211	0.906409996	7	45806913	45807098	186	+	0.254	0.373	0.780
ENSG00000272556	E027	6.6800092	0.005141785	0.9083676741	0.956351939	7	45807340	45807397	58	+	0.698	0.747	0.201
ENSG00000272556	E028	25.0150165	0.015889933	0.6855218040	0.826182452	7	45807490	45808024	535	+	1.184	1.269	0.299
ENSG00000272556	E029	46.6611532	0.011328511	0.1786897346	0.402216510	7	45808025	45808921	897	+	1.381	1.536	0.536
ENSG00000272556	E030	22.5202713	0.020472427	0.1795597946	0.403382002	7	45808922	45809330	409	+	1.023	1.240	0.778
ENSG00000272556	E031	99.6968279	0.016753351	0.0070607760	0.044905966	7	45809331	45811860	2530	+	1.630	1.871	0.813
ENSG00000272556	E032	16.2304077	0.002329158	0.1178192890	0.312241341	7	45811861	45812031	171	+	0.868	1.110	0.899
ENSG00000272556	E033	34.8880317	0.015955028	0.0127300024	0.069363339	7	45812032	45813209	1178	+	1.111	1.439	1.152
ENSG00000272556	E034	5.1223038	0.080654637	0.0957096569	0.274273149	7	45813210	45813262	53	+	0.254	0.712	2.387
ENSG00000272556	E035	10.7534852	0.044858204	0.3724928319	0.606083546	7	45813263	45813393	131	+	0.761	0.960	0.769
ENSG00000272556	E036	5.5287678	0.030287125	0.7718520854	0.879731518	7	45813394	45813413	20	+	0.621	0.709	0.372
ENSG00000272556	E037	6.3794932	0.009568234	0.5328824276	0.724104800	7	45813414	45813458	45	+	0.622	0.764	0.594
ENSG00000272556	E038	7.2719125	0.004758827	0.6608201251	0.810456262	7	45813459	45813508	50	+	0.698	0.802	0.424
ENSG00000272556	E039	5.3641931	0.005797582	0.9217988304	0.963167452	7	45813509	45813688	180	+	0.622	0.669	0.201
ENSG00000272556	E040	1.2135902	0.015378759	1.0000000000		7	45813689	45813737	49	+	0.254	0.281	0.195
ENSG00000272556	E041	5.1189979	0.008456304	0.0893964821	0.262670706	7	45813738	45813785	48	+	0.867	0.629	-0.968
ENSG00000272556	E042	97.8312984	0.036593901	0.0591807536	0.200948969	7	45813786	45815263	1478	+	1.666	1.859	0.656

Isoforom Switch Analysis

WANG Ziyi

Date: 19 5月 2022

ENSG00000272556

1 Isoform Switch

TableFilter v0.7.3

2 Differential Exon Usage

TableFilter v0.7.3