ENSG00000267374

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000591629 ENSG00000267374 HEK293_OSMI2_6hA HEK293_TMG_6hB MIR924HG lncRNA lncRNA 9.242836 4.406803 12.11901 0.8501806 1.106019 1.457387 0.9734746 0.09410739 2.5566113 0.09410739 0.19338588 4.6237204 0.08970417 0.01650000 0.21663333 0.20013333 2.658307e-02 1.194296e-05   FALSE
ENST00000653742 ENSG00000267374 HEK293_OSMI2_6hA HEK293_TMG_6hB MIR924HG lncRNA lncRNA 9.242836 4.406803 12.11901 0.8501806 1.106019 1.457387 0.2646355 0.22416634 0.1802309 0.13471620 0.18023086 -0.2997824 0.03330417 0.06743333 0.01613333 -0.05130000 6.859218e-01 1.194296e-05   FALSE
ENST00000658494 ENSG00000267374 HEK293_OSMI2_6hA HEK293_TMG_6hB MIR924HG lncRNA lncRNA 9.242836 4.406803 12.11901 0.8501806 1.106019 1.457387 0.2943769 0.46265266 0.1342991 0.26879191 0.13429912 -1.7117179 0.04157500 0.09256667 0.01236667 -0.08020000 5.675741e-01 1.194296e-05   FALSE
ENST00000666181 ENSG00000267374 HEK293_OSMI2_6hA HEK293_TMG_6hB MIR924HG lncRNA lncRNA 9.242836 4.406803 12.11901 0.8501806 1.106019 1.457387 0.6384219 0.00000000 0.1937758 0.00000000 0.19377583 4.3489111 0.07588333 0.00000000 0.01353333 0.01353333 9.630726e-01 1.194296e-05   FALSE
MSTRG.15728.33 ENSG00000267374 HEK293_OSMI2_6hA HEK293_TMG_6hB MIR924HG lncRNA   9.242836 4.406803 12.11901 0.8501806 1.106019 1.457387 0.3008108 0.04098868 0.9316912 0.04098868 0.02238852 4.2070051 0.02639583 0.00870000 0.07836667 0.06966667 1.914309e-03 1.194296e-05   FALSE
MSTRG.15728.59 ENSG00000267374 HEK293_OSMI2_6hA HEK293_TMG_6hB MIR924HG lncRNA   9.242836 4.406803 12.11901 0.8501806 1.106019 1.457387 0.4997383 0.00000000 1.0625880 0.00000000 1.06258799 6.7449522 0.03785000 0.00000000 0.07416667 0.07416667 9.744588e-01 1.194296e-05   FALSE
MSTRG.15728.63 ENSG00000267374 HEK293_OSMI2_6hA HEK293_TMG_6hB MIR924HG lncRNA   9.242836 4.406803 12.11901 0.8501806 1.106019 1.457387 2.3747992 2.23934119 1.0400846 0.72744643 0.25848857 -1.0989970 0.30632083 0.48930000 0.08390000 -0.40540000 1.194296e-05 1.194296e-05   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000267374 E001 0.7908862 0.0172671820 1.000000e+00   18 39202111 39202167 57 - 0.206 0.227 0.177
ENSG00000267374 E002 1.0949365 0.0141583075 7.862838e-01   18 39202168 39202177 10 - 0.281 0.227 -0.407
ENSG00000267374 E003 0.9169527 0.0156317637 9.810785e-01   18 39202178 39202236 59 - 0.245 0.227 -0.143
ENSG00000267374 E004 1.0761555 0.0150063741 7.880189e-01   18 39202237 39202299 63 - 0.281 0.227 -0.406
ENSG00000267374 E005 1.0408063 0.0172777417 7.915856e-01   18 39204607 39204669 63 - 0.281 0.227 -0.404
ENSG00000267374 E006 0.4466850 0.0224449425 7.197976e-01   18 39204670 39204697 28 - 0.163 0.000 -13.202
ENSG00000267374 E007 0.1779838 0.0350853148 1.000000e+00   18 39206917 39206917 1 - 0.061 0.000 -11.847
ENSG00000267374 E008 0.1779838 0.0350853148 1.000000e+00   18 39206918 39206918 1 - 0.061 0.000 -11.847
ENSG00000267374 E009 0.1779838 0.0350853148 1.000000e+00   18 39206919 39206920 2 - 0.061 0.000 -11.847
ENSG00000267374 E010 0.1426347 0.0319218972 1.000000e+00   18 39206921 39206926 6 - 0.061 0.000 -11.851
ENSG00000267374 E011 2.1890155 0.0102064517 2.319303e-01 4.674306e-01 18 39206927 39207022 96 - 0.472 0.227 -1.518
ENSG00000267374 E012 7.4786294 0.0039918033 1.396090e-01 3.468991e-01 18 39207023 39207121 99 - 0.867 0.647 -0.891
ENSG00000267374 E013 18.4229350 0.0019471038 6.045098e-02 2.038432e-01 18 39207122 39207257 136 - 1.216 1.026 -0.685
ENSG00000267374 E014 36.3258105 0.0068248082 3.465760e-01 5.841785e-01 18 39207258 39207625 368 - 1.479 1.411 -0.236
ENSG00000267374 E015 8.1964006 0.0040285001 5.604726e-01 7.436375e-01 18 39207626 39207626 1 - 0.884 0.812 -0.278
ENSG00000267374 E016 8.5004509 0.0040923923 4.811784e-01 6.878872e-01 18 39207627 39207627 1 - 0.901 0.812 -0.342
ENSG00000267374 E017 14.2441242 0.0024110223 6.498893e-01 8.034810e-01 18 39207628 39207684 57 - 1.092 1.053 -0.142
ENSG00000267374 E018 16.7241856 0.0019961251 5.308491e-01 7.226426e-01 18 39207685 39207752 68 - 1.156 1.103 -0.193
ENSG00000267374 E019 22.1537255 0.0018049903 4.850557e-02 1.762068e-01 18 39207753 39207883 131 - 1.286 1.103 -0.651
ENSG00000267374 E020 28.0931680 0.0014180176 1.987350e-03 1.698102e-02 18 39207884 39208039 156 - 1.399 1.126 -0.963
ENSG00000267374 E021 27.7432212 0.0014494761 1.235961e-03 1.168987e-02 18 39208040 39208460 421 - 1.394 1.103 -1.027
ENSG00000267374 E022 12.5695073 0.0026213659 7.724701e-02 2.393024e-01 18 39208461 39208553 93 - 1.070 0.856 -0.800
ENSG00000267374 E023 8.8085156 0.0346269567 4.991622e-01 7.002422e-01 18 39208554 39208598 45 - 0.921 0.812 -0.420
ENSG00000267374 E024 9.9183728 0.0036386241 5.554276e-03 3.749315e-02 18 39208599 39208644 46 - 0.997 0.574 -1.702
ENSG00000267374 E025 15.7205000 0.0023818291 2.874388e-03 2.265558e-02 18 39208645 39208789 145 - 1.174 0.812 -1.344
ENSG00000267374 E026 1.4051438 0.0136968632 5.602691e-01 7.435070e-01 18 39214128 39214269 142 - 0.345 0.227 -0.818
ENSG00000267374 E027 0.2027342 0.0392938967 9.147255e-02   18 39233109 39233402 294 - 0.000 0.228 14.063
ENSG00000267374 E028 1.0573043 0.3945689805 1.000000e+00   18 39233403 39233530 128 - 0.250 0.232 -0.143
ENSG00000267374 E029 0.0000000       18 39275634 39275635 2 -      
ENSG00000267374 E030 0.0000000       18 39275636 39275637 2 -      
ENSG00000267374 E031 0.0000000       18 39275638 39275638 1 -      
ENSG00000267374 E032 0.3453689 0.0288533440 2.749463e-01   18 39275639 39275798 160 - 0.061 0.227 2.185
ENSG00000267374 E033 0.1614157 0.0330960651 1.000000e+00   18 39291015 39291114 100 - 0.061 0.000 -11.850
ENSG00000267374 E034 1.9945132 0.0106564298 2.982283e-01 5.387244e-01 18 39293186 39293304 119 - 0.374 0.573 1.007
ENSG00000267374 E035 1.2179823 0.0178515480 2.169183e-01   18 39293305 39293406 102 - 0.245 0.485 1.441
ENSG00000267374 E036 6.8053854 0.0049069399 2.946604e-02 1.257716e-01 18 39297573 39298729 1157 - 0.732 1.026 1.131
ENSG00000267374 E037 0.0000000       18 39317510 39318082 573 -      
ENSG00000267374 E038 0.3453689 0.0288533440 2.749463e-01   18 39320612 39321317 706 - 0.061 0.227 2.185
ENSG00000267374 E039 0.0000000       18 39327617 39327765 149 -      
ENSG00000267374 E040 4.3009507 0.6924714845 9.239276e-01 9.643534e-01 18 39327766 39327951 186 - 0.645 0.591 -0.239
ENSG00000267374 E041 0.1779838 0.0350853148 1.000000e+00   18 39340491 39340585 95 - 0.061 0.000 -11.847
ENSG00000267374 E042 0.0000000       18 39340586 39340641 56 -      
ENSG00000267374 E043 0.1426347 0.0319218972 1.000000e+00   18 39340690 39340717 28 - 0.061 0.000 -11.851
ENSG00000267374 E044 0.1779838 0.0350853148 1.000000e+00   18 39348132 39348576 445 - 0.061 0.000 -11.847
ENSG00000267374 E045 0.0000000       18 39348577 39348578 2 -      
ENSG00000267374 E046 0.0000000       18 39348579 39348579 1 -      
ENSG00000267374 E047 0.0000000       18 39348580 39348580 1 -      
ENSG00000267374 E048 2.3920866 0.2296633162 1.315579e-02 7.106547e-02 18 39348581 39348757 177 - 0.277 0.861 2.812
ENSG00000267374 E049 0.6434498 0.0197724659 4.844722e-01   18 39387252 39387304 53 - 0.206 0.000 -13.527
ENSG00000267374 E050 0.8455639 0.2762610660 3.386127e-01   18 39387918 39388428 511 - 0.164 0.379 1.598
ENSG00000267374 E051 8.2193631 0.0034543849 8.945354e-01 9.489798e-01 18 39388429 39388527 99 - 0.867 0.896 0.109
ENSG00000267374 E052 0.1426347 0.0319218972 1.000000e+00   18 39435438 39435533 96 - 0.061 0.000 -11.851
ENSG00000267374 E053 0.2922838 0.0274424043 2.791242e-01   18 39513350 39513412 63 - 0.061 0.227 2.177
ENSG00000267374 E054 17.4095330 0.0024447788 1.109954e-01 3.006023e-01 18 39535458 39535536 79 - 1.188 1.026 -0.584
ENSG00000267374 E055 20.0493472 0.0157610098 8.451115e-02 2.537471e-01 18 39535537 39535615 79 - 1.246 1.053 -0.691
ENSG00000267374 E056 0.0000000       18 39535616 39535618 3 -      
ENSG00000267374 E057 0.0000000       18 39613014 39613554 541 -      
ENSG00000267374 E058 0.0000000       18 39648802 39648847 46 -      
ENSG00000267374 E059 1.2626112 0.1430332139 4.092941e-02   18 39648848 39649230 383 - 0.163 0.584 2.639
ENSG00000267374 E060 0.5177432 0.0246494247 6.640535e-02   18 39649562 39649716 155 - 0.061 0.376 3.185
ENSG00000267374 E061 0.1614157 0.0330960651 1.000000e+00   18 39669328 39669450 123 - 0.061 0.000 -11.850
ENSG00000267374 E062 6.6016173 0.0048985887 7.037648e-09 3.414727e-07 18 39686274 39686445 172 - 0.553 1.259 2.736
ENSG00000267374 E063 0.1779838 0.0350853148 1.000000e+00   18 39689882 39690692 811 - 0.061 0.000 -11.847
ENSG00000267374 E064 0.0000000       18 39699005 39699548 544 -      
ENSG00000267374 E065 5.6779232 0.2901330715 8.211960e-02 2.489698e-01 18 39699549 39699635 87 - 0.580 1.113 2.096
ENSG00000267374 E066 0.5008152 0.0458052333 7.147489e-01   18 39712656 39712803 148 - 0.163 0.000 -13.178
ENSG00000267374 E067 1.2849088 0.1774505805 5.433263e-03   18 39733128 39733375 248 - 0.116 0.704 3.724
ENSG00000267374 E068 3.3885945 0.0197922250 7.729365e-03 4.805154e-02 18 39751152 39751328 177 - 0.622 0.000 -15.121
ENSG00000267374 E069 24.3748066 0.0103905078 3.933452e-02 1.530614e-01 18 39751329 39751360 32 - 1.259 1.461 0.701
ENSG00000267374 E070 0.3503582 0.0272591479 2.766142e-01   18 39751361 39751389 29 - 0.061 0.227 2.180
ENSG00000267374 E071 0.1614157 0.0330960651 1.000000e+00   18 39751737 39751830 94 - 0.061 0.000 -11.850
ENSG00000267374 E072 0.4702677 0.0233884384 5.191480e-01   18 39751831 39751904 74 - 0.115 0.227 1.176
ENSG00000267374 E073 0.3393995 0.0272881874 1.000000e+00   18 39751905 39752060 156 - 0.115 0.000 -12.723
ENSG00000267374 E074 0.0000000       18 39781349 39781349 1 -      
ENSG00000267374 E075 0.4762370 0.0217681645 6.729221e-02   18 39781350 39781812 463 - 0.061 0.375 3.181
ENSG00000267374 E076 0.3040503 0.0274424043 1.000000e+00   18 39783268 39783339 72 - 0.115 0.000 -12.722
ENSG00000267374 E077 0.2617363 0.0463930146 1.809663e-02   18 39784075 39784099 25 - 0.000 0.374 14.931
ENSG00000267374 E078 1.0172733 0.0167761912 1.473928e-01   18 39784100 39784242 143 - 0.206 0.485 1.760
ENSG00000267374 E079 51.2566823 0.0008773458 5.295730e-09 2.644330e-07 18 39800069 39800322 254 - 1.536 1.847 1.056