ENSG00000241973

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000255882 ENSG00000241973 HEK293_OSMI2_6hA HEK293_TMG_6hB PI4KA protein_coding protein_coding 56.9228 87.7346 32.69325 7.574293 0.8816398 -1.423876 23.653145 36.756875 17.042109 5.049329 0.7309383 -1.1084564 0.47247500 0.41560000 0.52136667 0.1057667 2.439951e-01 2.429496e-11 FALSE TRUE
ENST00000399213 ENSG00000241973 HEK293_OSMI2_6hA HEK293_TMG_6hB PI4KA protein_coding protein_coding 56.9228 87.7346 32.69325 7.574293 0.8816398 -1.423876 7.465122 11.493862 0.000000 3.452788 0.0000000 -10.1679026 0.08846667 0.12670000 0.00000000 -0.1267000 2.429496e-11 2.429496e-11 FALSE TRUE
ENST00000477245 ENSG00000241973 HEK293_OSMI2_6hA HEK293_TMG_6hB PI4KA protein_coding retained_intron 56.9228 87.7346 32.69325 7.574293 0.8816398 -1.423876 10.495657 17.832817 1.243826 3.301747 0.3110552 -3.8309347 0.14082917 0.19980000 0.03813333 -0.1616667 2.852477e-05 2.429496e-11 FALSE TRUE
MSTRG.21688.14 ENSG00000241973 HEK293_OSMI2_6hA HEK293_TMG_6hB PI4KA protein_coding   56.9228 87.7346 32.69325 7.574293 0.8816398 -1.423876 4.580897 6.173337 6.619470 3.294402 0.4082910 0.1005077 0.09065833 0.07506667 0.20330000 0.1282333 7.407002e-01 2.429496e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000241973 E001 1.8818925 0.0133789747 1.647210e-02 8.355049e-02 22 20707691 20707692 2 - 0.000 0.502 12.942
ENSG00000241973 E002 12.8218246 0.0033244346 1.497886e-01 3.619792e-01 22 20707693 20707702 10 - 0.975 1.134 0.578
ENSG00000241973 E003 13.5608955 0.0047510184 9.806731e-02 2.783800e-01 22 20707703 20707703 1 - 0.975 1.158 0.666
ENSG00000241973 E004 15.3046653 0.0129004049 6.818565e-02 2.210080e-01 22 20707704 20707709 6 - 0.999 1.213 0.771
ENSG00000241973 E005 32.3234409 0.0055237936 7.020698e-01 8.368963e-01 22 20707710 20707718 9 - 1.454 1.486 0.109
ENSG00000241973 E006 38.0241557 0.0023665298 4.455291e-01 6.624503e-01 22 20707719 20707726 8 - 1.507 1.559 0.178
ENSG00000241973 E007 40.6654769 0.0035738184 5.251922e-01 7.185649e-01 22 20707727 20707733 7 - 1.541 1.585 0.151
ENSG00000241973 E008 679.6664946 0.0011301092 2.488321e-08 1.068726e-06 22 20707734 20708098 365 - 2.685 2.811 0.419
ENSG00000241973 E009 477.2148452 0.0012663468 3.937419e-04 4.670096e-03 22 20709296 20709379 84 - 2.560 2.650 0.299
ENSG00000241973 E010 10.8912140 0.0110780962 9.250382e-01 9.648206e-01 22 20709380 20709499 120 - 1.020 1.029 0.032
ENSG00000241973 E011 476.8384748 0.0013492816 1.762378e-03 1.544602e-02 22 20709908 20709997 90 - 2.567 2.647 0.267
ENSG00000241973 E012 53.6818261 0.0763662932 2.082800e-01 4.397664e-01 22 20709998 20710698 701 - 1.789 1.640 -0.505
ENSG00000241973 E013 368.5073606 0.0003450382 4.537301e-04 5.254265e-03 22 20710699 20710751 53 - 2.456 2.536 0.265
ENSG00000241973 E014 399.0916752 0.0001707023 1.492575e-05 2.969843e-04 22 20710752 20710858 107 - 2.482 2.573 0.303
ENSG00000241973 E015 91.6986983 0.0978225369 2.025940e-01 4.328219e-01 22 20710859 20711301 443 - 2.020 1.870 -0.504
ENSG00000241973 E016 33.3007702 0.1147461983 3.757584e-01 6.088157e-01 22 20711302 20711340 39 - 1.557 1.455 -0.348
ENSG00000241973 E017 254.8679660 0.0001833572 4.105488e-09 2.098755e-07 22 20711341 20711438 98 - 2.235 2.392 0.524
ENSG00000241973 E018 87.9476206 0.0046786473 4.694713e-03 3.297681e-02 22 20711439 20711461 23 - 1.775 1.932 0.531
ENSG00000241973 E019 4.6578489 0.0747995975 6.430033e-01 7.988316e-01 22 20711462 20711477 16 - 0.759 0.682 -0.317
ENSG00000241973 E020 83.5935843 0.0053569489 2.175857e-07 7.434820e-06 22 20712486 20712507 22 - 1.620 1.939 1.081
ENSG00000241973 E021 132.1309896 0.0006394445 1.286651e-13 1.567452e-11 22 20712508 20712611 104 - 1.833 2.133 1.008
ENSG00000241973 E022 198.8897652 0.0032492452 2.268301e-06 5.828563e-05 22 20712693 20712797 105 - 2.100 2.296 0.656
ENSG00000241973 E023 32.2431357 0.1108813895 4.451294e-01 6.621971e-01 22 20712798 20713280 483 - 1.522 1.450 -0.247
ENSG00000241973 E024 308.4785643 0.0017427632 4.729315e-07 1.475038e-05 22 20713281 20713390 110 - 2.318 2.477 0.529
ENSG00000241973 E025 336.0300726 0.0029591263 1.246798e-02 6.832363e-02 22 20714458 20714528 71 - 2.410 2.498 0.293
ENSG00000241973 E026 375.5952835 0.0012946047 9.679039e-03 5.674431e-02 22 20714628 20714700 73 - 2.471 2.542 0.234
ENSG00000241973 E027 424.0688507 0.0001392363 2.799141e-03 2.218342e-02 22 20717708 20717778 71 - 2.532 2.592 0.198
ENSG00000241973 E028 0.0000000       22 20717779 20717844 66 -      
ENSG00000241973 E029 461.6185095 0.0001449606 1.837302e-05 3.555739e-04 22 20718693 20718822 130 - 2.552 2.635 0.276
ENSG00000241973 E030 338.0400518 0.0002486994 7.255702e-04 7.656652e-03 22 20721298 20721418 121 - 2.419 2.496 0.257
ENSG00000241973 E031 4.9385833 0.1646466790 2.777263e-01 5.178168e-01 22 20721419 20722009 591 - 0.493 0.785 1.270
ENSG00000241973 E032 1.4880183 0.0124169586 2.766985e-01 5.167064e-01 22 20726316 20726487 172 - 0.493 0.298 -1.099
ENSG00000241973 E033 178.1491943 0.0002882364 4.757813e-02 1.739722e-01 22 20726488 20726497 10 - 2.155 2.216 0.203
ENSG00000241973 E034 228.0234226 0.0005299703 4.011683e-02 1.550002e-01 22 20726498 20726541 44 - 2.266 2.324 0.194
ENSG00000241973 E035 381.8462091 0.0001880514 1.166284e-03 1.117226e-02 22 20727230 20727397 168 - 2.481 2.550 0.230
ENSG00000241973 E036 2.9015097 0.0216603079 6.469535e-01 8.014384e-01 22 20727569 20727773 205 - 0.493 0.575 0.383
ENSG00000241973 E037 350.1911682 0.0002398113 1.608599e-02 8.211901e-02 22 20727774 20727864 91 - 2.455 2.508 0.179
ENSG00000241973 E038 480.7122320 0.0001404719 5.525667e-04 6.152943e-03 22 20729313 20729506 194 - 2.583 2.648 0.217
ENSG00000241973 E039 270.0523418 0.0002185234 7.967543e-03 4.916328e-02 22 20729632 20729711 80 - 2.333 2.399 0.222
ENSG00000241973 E040 330.4501892 0.0006651608 1.573585e-01 3.727589e-01 22 20729892 20730011 120 - 2.443 2.479 0.118
ENSG00000241973 E041 315.7766206 0.0002282275 5.089686e-01 7.071238e-01 22 20732971 20733098 128 - 2.439 2.454 0.050
ENSG00000241973 E042 216.4815107 0.0002938511 8.842195e-01 9.435234e-01 22 20733736 20733843 108 - 2.284 2.288 0.012
ENSG00000241973 E043 2.3366011 0.1043902123 6.963683e-01 8.331878e-01 22 20733844 20734042 199 - 0.558 0.472 -0.413
ENSG00000241973 E044 200.9440213 0.0004719276 6.920078e-03 4.426822e-02 22 20734043 20734194 152 - 2.192 2.273 0.271
ENSG00000241973 E045 141.7339208 0.0014444089 1.619700e-03 1.446118e-02 22 20734395 20734476 82 - 2.010 2.134 0.414
ENSG00000241973 E046 207.3792904 0.0015183913 2.479229e-02 1.115844e-01 22 20734477 20734553 77 - 2.209 2.285 0.254
ENSG00000241973 E047 2.8276572 0.0577606010 8.338285e-01 9.159302e-01 22 20734554 20734667 114 - 0.494 0.533 0.191
ENSG00000241973 E048 3.4441910 0.0164533009 7.265018e-01 8.521145e-01 22 20736409 20736866 458 - 0.561 0.619 0.261
ENSG00000241973 E049 300.6241488 0.0001998035 3.404337e-02 1.389814e-01 22 20742228 20742355 128 - 2.392 2.442 0.167
ENSG00000241973 E050 381.8967874 0.0001386124 6.333751e-01 7.925363e-01 22 20742608 20742764 157 - 2.524 2.533 0.031
ENSG00000241973 E051 0.7373532 0.0211470309 1.567207e-01   22 20742765 20742917 153 - 0.000 0.297 11.788
ENSG00000241973 E052 295.8239436 0.0019961076 6.815242e-01 8.236085e-01 22 20744628 20744720 93 - 2.430 2.414 -0.052
ENSG00000241973 E053 2.5581163 0.0088635484 7.301930e-01 8.543550e-01 22 20747484 20747582 99 - 0.561 0.501 -0.281
ENSG00000241973 E054 358.8879807 0.0011189523 8.465204e-02 2.540439e-01 22 20747583 20747702 120 - 2.536 2.489 -0.157
ENSG00000241973 E055 304.2423560 0.0002705906 8.983113e-03 5.375023e-02 22 20749905 20749994 90 - 2.475 2.413 -0.206
ENSG00000241973 E056 262.3322284 0.0002956325 7.195394e-02 2.287216e-01 22 20751293 20751376 84 - 2.402 2.355 -0.154
ENSG00000241973 E057 257.9683865 0.0008849871 7.002763e-02 2.248710e-01 22 20751674 20751755 82 - 2.400 2.348 -0.173
ENSG00000241973 E058 339.1613908 0.0004275818 3.593507e-01 5.953003e-01 22 20752903 20753027 125 - 2.495 2.472 -0.076
ENSG00000241973 E059 212.9865494 0.0002416213 1.409155e-01 3.488998e-01 22 20753110 20753145 36 - 2.307 2.265 -0.137
ENSG00000241973 E060 216.6718022 0.0010738709 2.332974e-01 4.689226e-01 22 20753146 20753180 35 - 2.310 2.272 -0.128
ENSG00000241973 E061 212.5523561 0.0023924386 7.820081e-01 8.858196e-01 22 20761304 20761352 49 - 2.283 2.271 -0.039
ENSG00000241973 E062 200.6895590 0.0039275619 3.182364e-01 5.581447e-01 22 20761353 20761386 34 - 2.280 2.237 -0.145
ENSG00000241973 E063 3.6225501 0.1697614661 4.152759e-01 6.399758e-01 22 20764615 20764816 202 - 0.720 0.579 -0.606
ENSG00000241973 E064 319.0285531 0.0001864909 7.737231e-01 8.809588e-01 22 20764817 20764950 134 - 2.457 2.450 -0.025
ENSG00000241973 E065 279.2789543 0.0005552079 6.234406e-01 7.861888e-01 22 20765100 20765236 137 - 2.404 2.390 -0.047
ENSG00000241973 E066 249.3585443 0.0002964605 4.194590e-01 6.432352e-01 22 20765585 20765693 109 - 2.365 2.343 -0.071
ENSG00000241973 E067 181.9707489 0.0002293948 9.564102e-01 9.800837e-01 22 20793193 20793243 51 - 2.212 2.210 -0.007
ENSG00000241973 E068 0.1723744 0.0339204638 1.000000e+00   22 20793335 20793374 40 - 0.000 0.078 9.472
ENSG00000241973 E069 382.3046775 0.0019518855 1.181792e-01 3.128534e-01 22 20796146 20796314 169 - 2.564 2.517 -0.158
ENSG00000241973 E070 3.3579070 0.0179623923 8.154553e-01 9.054910e-01 22 20798478 20798583 106 - 0.560 0.599 0.174
ENSG00000241973 E071 324.5379111 0.0022545874 7.712944e-03 4.798713e-02 22 20798584 20798687 104 - 2.519 2.434 -0.284
ENSG00000241973 E072 1.0360543 0.0402022439 1.059521e-01   22 20798940 20799092 153 - 0.493 0.201 -1.847
ENSG00000241973 E073 407.2578086 0.0002189279 4.621974e-03 3.258677e-02 22 20799093 20799276 184 - 2.600 2.543 -0.192
ENSG00000241973 E074 276.2975135 0.0026772230 8.468770e-04 8.668110e-03 22 20799671 20799766 96 - 2.472 2.357 -0.383
ENSG00000241973 E075 311.8239167 0.0002264166 3.171618e-05 5.663879e-04 22 20801973 20802105 133 - 2.511 2.417 -0.314
ENSG00000241973 E076 302.2251093 0.0003518918 2.487267e-05 4.595747e-04 22 20803191 20803320 130 - 2.501 2.401 -0.333
ENSG00000241973 E077 204.1506103 0.0002803950 5.909005e-02 2.007251e-01 22 20804300 20804394 95 - 2.297 2.244 -0.179
ENSG00000241973 E078 111.7641290 0.0004065096 6.143483e-03 4.043503e-02 22 20804395 20804400 6 - 2.070 1.968 -0.342
ENSG00000241973 E079 358.0807723 0.0004497856 2.057365e-04 2.737721e-03 22 20804974 20805165 192 - 2.562 2.477 -0.283
ENSG00000241973 E080 252.3271730 0.0004507711 1.027330e-03 1.012385e-02 22 20807362 20807447 86 - 2.411 2.325 -0.289
ENSG00000241973 E081 157.5905472 0.0002712257 5.847103e-04 6.445362e-03 22 20807448 20807458 11 - 2.223 2.116 -0.359
ENSG00000241973 E082 207.9174911 0.0008570161 1.081129e-04 1.595417e-03 22 20810967 20811026 60 - 2.350 2.234 -0.387
ENSG00000241973 E083 133.7531461 0.0017784246 4.160947e-05 7.116774e-04 22 20811027 20811032 6 - 2.186 2.029 -0.526
ENSG00000241973 E084 330.3768065 0.0030066694 3.191352e-04 3.922655e-03 22 20813358 20813506 149 - 2.554 2.430 -0.415
ENSG00000241973 E085 221.3808435 0.0019004733 3.420193e-05 6.033318e-04 22 20818483 20818549 67 - 2.390 2.252 -0.461
ENSG00000241973 E086 337.9824196 0.0013072755 1.825861e-05 3.536015e-04 22 20819641 20819864 224 - 2.561 2.444 -0.389
ENSG00000241973 E087 132.4619656 0.0017994284 2.902503e-06 7.224268e-05 22 20819865 20819900 36 - 2.197 2.017 -0.602
ENSG00000241973 E088 178.6176587 0.0011835218 1.854648e-07 6.446212e-06 22 20820539 20820611 73 - 2.322 2.153 -0.563
ENSG00000241973 E089 119.6232891 0.0005323262 9.233501e-10 5.433336e-08 22 20824326 20824346 21 - 2.178 1.963 -0.721
ENSG00000241973 E090 174.0500953 0.0003141873 3.267256e-13 3.684297e-11 22 20824347 20824414 68 - 2.337 2.126 -0.705
ENSG00000241973 E091 182.5756365 0.0009528181 1.003595e-12 1.029810e-10 22 20834562 20834655 94 - 2.361 2.140 -0.739
ENSG00000241973 E092 148.1022066 0.0003126906 7.353576e-07 2.172593e-05 22 20838615 20838731 117 - 2.231 2.075 -0.525
ENSG00000241973 E093 0.1723744 0.0339204638 1.000000e+00   22 20857200 20857342 143 - 0.000 0.078 9.472
ENSG00000241973 E094 1.0704758 0.1392139091 8.160368e-02   22 20858338 20858569 232 - 0.497 0.146 -2.420
ENSG00000241973 E095 80.5477836 0.0035948401 7.708790e-01 8.791948e-01 22 20858570 20858812 243 - 1.852 1.868 0.054
ENSG00000241973 E096 0.0000000       22 20859123 20859417 295 -