ENSG00000215301

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000542215 ENSG00000215301 HEK293_OSMI2_6hA HEK293_TMG_6hB DDX3X protein_coding nonsense_mediated_decay 105.6527 25.8766 160.9843 1.924827 8.422172 2.636732 8.165635 0.0000000 13.935131 0.0000000 0.9500843 10.445546 0.04461250 0.000000000 0.08643333 0.08643333 2.121241e-26 2.121241e-26 TRUE TRUE
ENST00000631641 ENSG00000215301 HEK293_OSMI2_6hA HEK293_TMG_6hB DDX3X protein_coding retained_intron 105.6527 25.8766 160.9843 1.924827 8.422172 2.636732 8.802834 0.1589453 10.198462 0.1589453 1.3771059 5.917065 0.04761667 0.006966667 0.06353333 0.05656667 1.195646e-01 2.121241e-26 FALSE TRUE
ENST00000644876 ENSG00000215301 HEK293_OSMI2_6hA HEK293_TMG_6hB DDX3X protein_coding protein_coding 105.6527 25.8766 160.9843 1.924827 8.422172 2.636732 50.052317 16.2798232 78.326586 1.9915540 3.1208175 2.265715 0.50567917 0.626366667 0.48726667 -0.13910000 3.377973e-01 2.121241e-26 FALSE TRUE
ENST00000646093 ENSG00000215301 HEK293_OSMI2_6hA HEK293_TMG_6hB DDX3X protein_coding retained_intron 105.6527 25.8766 160.9843 1.924827 8.422172 2.636732 10.575959 0.3815464 17.652813 0.3815464 1.3157575 5.495388 0.06177500 0.016700000 0.10976667 0.09306667 1.603262e-01 2.121241e-26 FALSE FALSE
ENST00000646319 ENSG00000215301 HEK293_OSMI2_6hA HEK293_TMG_6hB DDX3X protein_coding protein_coding 105.6527 25.8766 160.9843 1.924827 8.422172 2.636732 4.964795 3.0493479 2.755369 1.6378285 1.3953428 -0.145752 0.09656250 0.110066667 0.01633333 -0.09373333 8.361110e-01 2.121241e-26 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000215301 E001 0.2735028 0.0256609727 2.827221e-01   X 41333348 41333348 1 + 0.058 0.236 2.327
ENSG00000215301 E002 1.9459924 0.0120896778 7.039901e-01 8.381265e-01 X 41333349 41333397 49 + 0.387 0.500 0.589
ENSG00000215301 E003 15.3051774 0.0020877323 9.880485e-01 9.958358e-01 X 41333398 41333699 302 + 1.087 1.146 0.212
ENSG00000215301 E004 13.6643099 0.0245193193 3.168795e-01 5.568675e-01 X 41333700 41333783 84 + 1.011 1.191 0.653
ENSG00000215301 E005 17.5171643 0.0204443380 9.028140e-02 2.642828e-01 X 41333784 41333912 129 + 1.095 1.342 0.877
ENSG00000215301 E006 23.4589353 0.0019676258 4.055352e-01 6.327132e-01 X 41333913 41333993 81 + 1.251 1.382 0.458
ENSG00000215301 E007 16.6797601 0.0066526501 2.651705e-01 5.045269e-01 X 41333994 41334009 16 + 1.106 1.279 0.613
ENSG00000215301 E008 15.3579592 0.0116900176 5.859787e-01 7.609375e-01 X 41334010 41334011 2 + 1.086 1.206 0.432
ENSG00000215301 E009 21.3757530 0.0271446666 5.360446e-01 7.263557e-01 X 41334012 41334125 114 + 1.215 1.349 0.471
ENSG00000215301 E010 12.0736431 0.0030123600 3.170798e-01 5.570752e-01 X 41334126 41334161 36 + 0.977 1.146 0.616
ENSG00000215301 E011 9.4779263 0.0068586210 1.681912e-01 3.881651e-01 X 41334162 41334163 2 + 0.873 1.098 0.836
ENSG00000215301 E012 142.7104155 0.0016876743 1.055318e-02 6.046723e-02 X 41334164 41334174 11 + 2.042 1.990 -0.175
ENSG00000215301 E013 359.0458457 0.0012087266 7.815114e-02 2.411231e-01 X 41334175 41334244 70 + 2.432 2.443 0.035
ENSG00000215301 E014 355.1813422 0.0021830177 1.150094e-01 3.075048e-01 X 41334245 41334256 12 + 2.428 2.438 0.034
ENSG00000215301 E015 380.8060985 0.0007324369 5.043569e-02 1.806840e-01 X 41334257 41334297 41 + 2.458 2.468 0.034
ENSG00000215301 E016 0.4952057 0.2723398362 5.227346e-01   X 41334591 41334605 15 + 0.110 0.238 1.334
ENSG00000215301 E017 0.4952057 0.2723398362 5.227346e-01   X 41334606 41334609 4 + 0.110 0.238 1.334
ENSG00000215301 E018 0.4952057 0.2723398362 5.227346e-01   X 41334610 41334612 3 + 0.110 0.238 1.334
ENSG00000215301 E019 0.4952057 0.2723398362 5.227346e-01   X 41334613 41334613 1 + 0.110 0.238 1.334
ENSG00000215301 E020 0.4952057 0.2723398362 5.227346e-01   X 41334614 41334620 7 + 0.110 0.238 1.334
ENSG00000215301 E021 0.4952057 0.2723398362 5.227346e-01   X 41334621 41334633 13 + 0.110 0.238 1.334
ENSG00000215301 E022 0.9528494 0.1415634971 4.222226e-01   X 41334634 41334769 136 + 0.196 0.390 1.349
ENSG00000215301 E023 0.4764247 0.0217681645 5.198160e-01   X 41334770 41334815 46 + 0.110 0.236 1.330
ENSG00000215301 E024 2.4929726 0.2814442018 2.730326e-01 5.128776e-01 X 41334816 41335122 307 + 0.366 0.731 1.727
ENSG00000215301 E025 0.8677416 0.2238096242 9.233123e-01   X 41335123 41335208 86 + 0.201 0.237 0.307
ENSG00000215301 E026 6.1944671 0.0259994425 1.984884e-01 4.277217e-01 X 41335209 41336082 874 + 0.702 0.951 0.977
ENSG00000215301 E027 2.5099709 0.2326384537 7.345290e-02 2.316866e-01 X 41336083 41336159 77 + 0.328 0.832 2.358
ENSG00000215301 E028 4.8393014 0.0919973740 1.498845e-02 7.804097e-02 X 41336160 41336738 579 + 0.521 1.025 2.050
ENSG00000215301 E029 443.9911931 0.0001626361 6.069841e-04 6.638750e-03 X 41337408 41337465 58 + 2.528 2.513 -0.050
ENSG00000215301 E030 13.0167847 0.3415062128 3.342065e-01 5.727890e-01 X 41337466 41337690 225 + 1.045 0.962 -0.309
ENSG00000215301 E031 79.0266708 0.0191836554 3.897551e-01 6.202792e-01 X 41337691 41338912 1222 + 1.755 1.886 0.444
ENSG00000215301 E032 8.0791974 0.0041152227 6.315932e-01 7.914279e-01 X 41338913 41339035 123 + 0.848 0.832 -0.063
ENSG00000215301 E033 263.1970215 0.0014894464 3.947465e-04 4.680376e-03 X 41339036 41339038 3 + 2.310 2.250 -0.200
ENSG00000215301 E034 401.5159517 0.0001736827 1.887452e-07 6.548165e-06 X 41339039 41339083 45 + 2.493 2.429 -0.214
ENSG00000215301 E035 24.0157177 0.1563398597 7.749593e-01 8.817346e-01 X 41339084 41339604 521 + 1.267 1.325 0.203
ENSG00000215301 E036 1.1848460 0.0163981196 2.214438e-01   X 41339910 41339942 33 + 0.235 0.500 1.591
ENSG00000215301 E037 1.1848460 0.0163981196 2.214438e-01   X 41339943 41339947 5 + 0.235 0.500 1.591
ENSG00000215301 E038 1.7921388 0.0345561351 8.185803e-02 2.484962e-01 X 41339948 41340005 58 + 0.302 0.662 1.841
ENSG00000215301 E039 1.2263522 0.0312927572 2.237592e-01   X 41340006 41340008 3 + 0.235 0.501 1.595
ENSG00000215301 E040 1.0946762 0.1125564718 4.088055e-02   X 41340009 41340011 3 + 0.155 0.591 2.755
ENSG00000215301 E041 1.0946762 0.1125564718 4.088055e-02   X 41340012 41340021 10 + 0.155 0.591 2.755
ENSG00000215301 E042 22.3164546 0.1130771960 3.668125e-01 6.013471e-01 X 41340022 41340635 614 + 1.191 1.458 0.933
ENSG00000215301 E043 13.6488343 0.2530002244 6.798343e-01 8.225823e-01 X 41340636 41340814 179 + 0.986 1.276 1.045
ENSG00000215301 E044 14.7783327 0.3295381510 9.697503e-01 9.867104e-01 X 41340815 41341069 255 + 1.030 1.275 0.875
ENSG00000215301 E045 13.7504132 0.0937988512 7.708514e-01 8.791737e-01 X 41341070 41341319 250 + 1.027 1.155 0.460
ENSG00000215301 E046 12.7533266 0.0350647321 2.159480e-01 4.485602e-01 X 41341320 41341483 164 + 0.972 1.194 0.804
ENSG00000215301 E047 370.2865532 0.0004256496 7.940584e-07 2.325390e-05 X 41341484 41341504 21 + 2.457 2.388 -0.230
ENSG00000215301 E048 686.7653282 0.0007250766 2.761908e-08 1.174056e-06 X 41341505 41341616 112 + 2.724 2.661 -0.208
ENSG00000215301 E049 27.7209301 0.0751990379 4.409948e-01 6.594613e-01 X 41341617 41341948 332 + 1.345 1.291 -0.188
ENSG00000215301 E050 19.1372927 0.1554510832 5.160918e-01 7.123175e-01 X 41341949 41342046 98 + 1.189 1.173 -0.057
ENSG00000215301 E051 33.8656977 0.1365336065 7.859561e-01 8.880704e-01 X 41342047 41342319 273 + 1.408 1.482 0.256
ENSG00000215301 E052 34.1042845 0.0352392072 6.181635e-01 7.825317e-01 X 41342320 41342494 175 + 1.402 1.518 0.400
ENSG00000215301 E053 790.0439820 0.0001171768 1.036290e-09 6.035179e-08 X 41342495 41342639 145 + 2.782 2.739 -0.143
ENSG00000215301 E054 394.3214742 0.0004098627 2.285766e-05 4.282609e-04 X 41342640 41342653 14 + 2.482 2.436 -0.156
ENSG00000215301 E055 16.1445034 0.0086215145 5.839105e-01 7.595609e-01 X 41342654 41342736 83 + 1.126 1.122 -0.013
ENSG00000215301 E056 644.0271515 0.0002297656 3.284986e-13 3.696926e-11 X 41342737 41342836 100 + 2.700 2.616 -0.282
ENSG00000215301 E057 4.2691635 0.0098157236 3.029743e-02 1.282549e-01 X 41342837 41343023 187 + 0.537 0.915 1.563
ENSG00000215301 E058 3.1285553 0.0079073567 2.342220e-01 4.699688e-01 X 41343024 41343215 192 + 0.479 0.727 1.104
ENSG00000215301 E059 296.5540825 0.0002591129 8.468689e-11 6.096559e-09 X 41343216 41343220 5 + 2.370 2.242 -0.429
ENSG00000215301 E060 470.8123097 0.0001635895 8.025243e-11 5.804390e-09 X 41343221 41343288 68 + 2.565 2.479 -0.286
ENSG00000215301 E061 414.7585723 0.0005397159 5.141287e-06 1.179717e-04 X 41343289 41343351 63 + 2.506 2.451 -0.185
ENSG00000215301 E062 13.0954323 0.0614058698 8.095241e-02 2.467249e-01 X 41343352 41343736 385 + 0.957 1.295 1.216
ENSG00000215301 E063 388.6622404 0.0010746548 8.787339e-05 1.340904e-03 X 41343737 41343822 86 + 2.477 2.427 -0.168
ENSG00000215301 E064 11.9296065 0.1999184560 5.169291e-01 7.129687e-01 X 41343823 41343988 166 + 0.945 1.188 0.885
ENSG00000215301 E065 6.7899953 0.1677078678 8.123400e-01 9.036355e-01 X 41343989 41344029 41 + 0.764 0.873 0.426
ENSG00000215301 E066 539.7818174 0.0001343204 3.040508e-05 5.462238e-04 X 41344030 41344128 99 + 2.615 2.591 -0.079
ENSG00000215301 E067 1.4051438 0.0136968632 5.497414e-01 7.361095e-01 X 41344191 41344238 48 + 0.332 0.236 -0.669
ENSG00000215301 E068 755.9301391 0.0001091268 2.310206e-05 4.323153e-04 X 41344239 41344399 161 + 2.758 2.747 -0.037
ENSG00000215301 E069 3.4768883 0.0503456873 3.869240e-01 6.180558e-01 X 41344400 41344564 165 + 0.519 0.725 0.904
ENSG00000215301 E070 719.0698996 0.0001152640 1.238738e-03 1.170782e-02 X 41345180 41345324 145 + 2.733 2.738 0.017
ENSG00000215301 E071 16.7364667 0.2260752079 6.709591e-01 8.169514e-01 X 41345325 41345403 79 + 1.121 1.177 0.197
ENSG00000215301 E072 613.1743884 0.0001363175 6.496764e-05 1.042134e-03 X 41345404 41345485 82 + 2.668 2.654 -0.049
ENSG00000215301 E073 382.0089799 0.0001729601 1.113527e-02 6.293921e-02 X 41345486 41345494 9 + 2.460 2.461 0.003
ENSG00000215301 E074 539.7983377 0.0001467075 2.587763e-04 3.311693e-03 X 41345495 41345548 54 + 2.613 2.600 -0.042
ENSG00000215301 E075 612.8451375 0.0004282302 4.054391e-04 4.782115e-03 X 41346229 41346319 91 + 2.667 2.655 -0.041
ENSG00000215301 E076 599.9750799 0.0001695442 9.315450e-02 2.696032e-01 X 41346320 41346410 91 + 2.651 2.681 0.098
ENSG00000215301 E077 2.9554409 0.0113473122 8.331793e-01 9.155575e-01 X 41346411 41346493 83 + 0.500 0.501 0.008
ENSG00000215301 E078 0.9090601 0.4604068542 2.977270e-01   X 41346494 41346504 11 + 0.161 0.398 1.744
ENSG00000215301 E079 621.3201697 0.0004395949 2.818560e-01 5.221743e-01 X 41346505 41346622 118 + 2.665 2.705 0.131
ENSG00000215301 E080 716.3229477 0.0001403834 2.988529e-02 1.269945e-01 X 41346859 41347012 154 + 2.729 2.752 0.078
ENSG00000215301 E081 10.2221463 0.1910111487 2.931917e-01 5.339027e-01 X 41347013 41347311 299 + 0.844 1.231 1.421
ENSG00000215301 E082 213.9713319 0.0032400723 1.698146e-01 3.902466e-01 X 41347312 41347314 3 + 2.208 2.207 -0.004
ENSG00000215301 E083 551.1844894 0.0001281977 6.418850e-01 7.980789e-01 X 41347315 41347445 131 + 2.606 2.677 0.236
ENSG00000215301 E084 250.1025803 0.0001861922 2.301104e-01 4.652646e-01 X 41347446 41347451 6 + 2.261 2.356 0.320
ENSG00000215301 E085 3.3336901 0.0068840882 2.807174e-01 5.209756e-01 X 41347452 41347454 3 + 0.500 0.727 1.006
ENSG00000215301 E086 13.3850465 0.0314141626 7.085668e-01 8.408810e-01 X 41347455 41347639 185 + 1.021 1.126 0.380
ENSG00000215301 E087 666.5885056 0.0002527749 8.649652e-03 5.225964e-02 X 41347640 41347859 220 + 2.682 2.792 0.366
ENSG00000215301 E088 421.1282235 0.0005644590 7.319151e-02 2.312140e-01 X 41347860 41347915 56 + 2.485 2.590 0.351
ENSG00000215301 E089 4738.0898573 0.0113593332 1.082303e-05 2.248043e-04 X 41347916 41351668 3753 + 3.502 3.733 0.766
ENSG00000215301 E090 0.4576437 0.1938537794 5.139595e-01   X 41357833 41357939 107 + 0.109 0.237 1.354
ENSG00000215301 E091 0.1723744 0.0350932815 9.346474e-02   X 41357940 41357990 51 + 0.000 0.236 12.353
ENSG00000215301 E092 0.1723744 0.0350932815 9.346474e-02   X 41357991 41358000 10 + 0.000 0.236 12.353
ENSG00000215301 E093 0.1723744 0.0350932815 9.346474e-02   X 41364274 41364472 199 + 0.000 0.236 12.353