ENSG00000204842

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000389154 ENSG00000204842 HEK293_OSMI2_6hA HEK293_TMG_6hB ATXN2 protein_coding protein_coding 23.2742 31.64205 26.35181 3.98868 0.8726816 -0.2638496 5.9444895 9.878030 5.396326 1.7920414 0.2427521 -0.87103464 0.25366667 0.30750000 0.20570000 -0.101800000 1.282391e-01 1.463344e-10 FALSE TRUE
ENST00000535949 ENSG00000204842 HEK293_OSMI2_6hA HEK293_TMG_6hB ATXN2 protein_coding protein_coding 23.2742 31.64205 26.35181 3.98868 0.8726816 -0.2638496 5.6392747 8.696190 7.229084 1.7441338 0.2041934 -0.26623419 0.23707500 0.26890000 0.27546667 0.006566667 9.907139e-01 1.463344e-10 FALSE TRUE
ENST00000548492 ENSG00000204842 HEK293_OSMI2_6hA HEK293_TMG_6hB ATXN2 protein_coding processed_transcript 23.2742 31.64205 26.35181 3.98868 0.8726816 -0.2638496 0.8979691 0.000000 3.489741 0.0000000 1.1789112 8.45110435 0.03625000 0.00000000 0.12996667 0.129966667 1.463344e-10 1.463344e-10 FALSE FALSE
ENST00000643669 ENSG00000204842 HEK293_OSMI2_6hA HEK293_TMG_6hB ATXN2 protein_coding protein_coding 23.2742 31.64205 26.35181 3.98868 0.8726816 -0.2638496 1.4190122 1.681268 1.578848 0.7351023 0.2298478 -0.09012464 0.06143750 0.05056667 0.06013333 0.009566667 8.933313e-01 1.463344e-10 FALSE TRUE
MSTRG.8025.16 ENSG00000204842 HEK293_OSMI2_6hA HEK293_TMG_6hB ATXN2 protein_coding   23.2742 31.64205 26.35181 3.98868 0.8726816 -0.2638496 1.4567732 1.504995 2.073677 0.2750135 0.1073351 0.45981827 0.06475417 0.05143333 0.07913333 0.027700000 6.216617e-01 1.463344e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000204842 E001 1.0352465 0.0380567768 6.378844e-01   12 111443485 111444187 703 - 0.263 0.351 0.583
ENSG00000204842 E002 0.5171231 0.9974770661 5.332943e-01   12 111451122 111451190 69 - 0.000 0.251 13.207
ENSG00000204842 E003 0.8922317 0.5572507502 1.804097e-01   12 111451947 111452085 139 - 0.000 0.365 13.966
ENSG00000204842 E004 0.1723744 0.0443971351 7.361115e-01   12 111452214 111452214 1 - 0.000 0.097 11.573
ENSG00000204842 E005 0.7677130 0.0175620805 5.853824e-02   12 111452215 111452222 8 - 0.000 0.353 13.891
ENSG00000204842 E006 0.9103477 0.0160537254 2.604761e-01   12 111452223 111452267 45 - 0.151 0.353 1.597
ENSG00000204842 E007 56.7591370 0.0313404748 7.495075e-01 8.664703e-01 12 111452268 111452295 28 - 1.772 1.740 -0.108
ENSG00000204842 E008 98.7517912 0.0098241957 3.097142e-01 5.501667e-01 12 111452296 111452413 118 - 1.952 2.011 0.199
ENSG00000204842 E009 64.6895490 0.0014427738 4.226956e-03 3.041413e-02 12 111452414 111452430 17 - 1.723 1.857 0.454
ENSG00000204842 E010 68.4433324 0.0006660062 1.937130e-05 3.720949e-04 12 111452431 111452444 14 - 1.705 1.897 0.647
ENSG00000204842 E011 64.8553188 0.0006668085 9.147567e-06 1.942320e-04 12 111452445 111452450 6 - 1.672 1.878 0.694
ENSG00000204842 E012 52.6483497 0.0010232797 1.678191e-04 2.309713e-03 12 111452451 111452462 12 - 1.593 1.786 0.656
ENSG00000204842 E013 59.9158141 0.0007103177 5.874872e-04 6.468415e-03 12 111452463 111452481 19 - 1.668 1.830 0.548
ENSG00000204842 E014 88.4117771 0.0004752377 1.757668e-04 2.400615e-03 12 111452482 111452522 41 - 1.847 1.991 0.487
ENSG00000204842 E015 65.8826293 0.0006102271 1.251091e-03 1.179897e-02 12 111452523 111452528 6 - 1.719 1.863 0.485
ENSG00000204842 E016 94.1481711 0.0004141038 1.320494e-03 1.231332e-02 12 111452529 111452564 36 - 1.890 2.008 0.395
ENSG00000204842 E017 96.8016732 0.0004708423 5.446713e-05 8.964832e-04 12 111452565 111452608 44 - 1.883 2.033 0.501
ENSG00000204842 E018 71.4051060 0.0005576947 6.081563e-02 2.046580e-01 12 111452609 111452610 2 - 1.803 1.879 0.255
ENSG00000204842 E019 119.4058480 0.0003324080 1.137241e-05 2.342102e-04 12 111452611 111452682 72 - 1.972 2.118 0.487
ENSG00000204842 E020 77.4445156 0.0041771122 8.635438e-03 5.220991e-02 12 111452683 111452732 50 - 1.793 1.923 0.437
ENSG00000204842 E021 61.8670044 0.0028298343 2.446324e-02 1.105428e-01 12 111452733 111452753 21 - 1.709 1.822 0.381
ENSG00000204842 E022 155.4831060 0.0002761740 2.794747e-08 1.185938e-06 12 111452754 111452840 87 - 2.076 2.239 0.544
ENSG00000204842 E023 35.9818319 0.0662936440 1.995419e-01 4.291261e-01 12 111452841 111453319 479 - 1.659 1.475 -0.626
ENSG00000204842 E024 20.9133867 0.1115165725 1.248806e-01 3.235528e-01 12 111453320 111453485 166 - 1.473 1.209 -0.919
ENSG00000204842 E025 20.8107876 0.0586285468 4.292953e-01 6.505055e-01 12 111453486 111453676 191 - 1.396 1.277 -0.416
ENSG00000204842 E026 160.0928697 0.0027672373 3.935546e-03 2.878817e-02 12 111453677 111453845 169 - 2.131 2.233 0.343
ENSG00000204842 E027 69.3724876 0.1568461567 2.235804e-01 4.577071e-01 12 111453846 111455044 1199 - 1.944 1.751 -0.649
ENSG00000204842 E028 15.9193086 0.0512505372 5.819431e-01 7.583723e-01 12 111455045 111455119 75 - 1.265 1.177 -0.310
ENSG00000204842 E029 52.4184295 0.0929985747 5.585647e-02 1.933059e-01 12 111455120 111455914 795 - 1.872 1.581 -0.988
ENSG00000204842 E030 22.9040195 0.0302587024 7.128300e-01 8.435178e-01 12 111455915 111456028 114 - 1.347 1.375 0.096
ENSG00000204842 E031 149.8663814 0.0020221908 3.122553e-03 2.414978e-02 12 111456029 111456081 53 - 2.103 2.206 0.343
ENSG00000204842 E032 146.6159032 0.0009201660 8.311395e-04 8.533136e-03 12 111456082 111456136 55 - 2.092 2.198 0.353
ENSG00000204842 E033 127.1622435 0.0027592125 2.881946e-02 1.238444e-01 12 111456137 111456188 52 - 2.046 2.130 0.281
ENSG00000204842 E034 108.2469114 0.0004422332 5.897611e-03 3.924108e-02 12 111456189 111456220 32 - 1.971 2.064 0.312
ENSG00000204842 E035 104.0687954 0.0003885532 1.645295e-02 8.347791e-02 12 111456221 111456256 36 - 1.961 2.042 0.272
ENSG00000204842 E036 117.2750171 0.0003338308 1.741235e-01 3.960433e-01 12 111457214 111457273 60 - 2.038 2.078 0.133
ENSG00000204842 E037 121.7357607 0.0003726692 4.313308e-01 6.521943e-01 12 111457274 111457359 86 - 2.065 2.085 0.066
ENSG00000204842 E038 3.9773053 0.0843472271 4.291940e-01 6.504053e-01 12 111457360 111458401 1042 - 0.780 0.624 -0.648
ENSG00000204842 E039 3.3083335 0.0504151140 2.442902e-01 4.814168e-01 12 111461139 111461305 167 - 0.487 0.681 0.878
ENSG00000204842 E040 36.9540626 0.0013993034 3.513552e-02 1.419396e-01 12 111464662 111464715 54 - 1.489 1.611 0.419
ENSG00000204842 E041 9.3072108 0.0031879848 1.037512e-02 5.974680e-02 12 111468358 111469425 1068 - 1.154 0.876 -1.024
ENSG00000204842 E042 10.5317985 0.0146494348 1.468699e-01 3.578051e-01 12 111469426 111469817 392 - 1.141 0.970 -0.626
ENSG00000204842 E043 10.9434872 0.0033566399 5.549817e-01 7.397814e-01 12 111469818 111470107 290 - 1.101 1.033 -0.244
ENSG00000204842 E044 155.5430047 0.0004302556 6.305157e-01 7.907720e-01 12 111470108 111470240 133 - 2.178 2.186 0.027
ENSG00000204842 E045 180.0882548 0.0002566660 4.241432e-01 6.466493e-01 12 111470558 111470742 185 - 2.237 2.252 0.051
ENSG00000204842 E046 1.0121411 0.0868731456 2.718367e-01   12 111470743 111471945 1203 - 0.151 0.355 1.607
ENSG00000204842 E047 10.5320442 0.0069540788 8.861024e-01 9.446066e-01 12 111479070 111479102 33 - 1.071 1.051 -0.074
ENSG00000204842 E048 0.7263945 0.0229038320 3.996631e-01   12 111482787 111482831 45 - 0.151 0.301 1.270
ENSG00000204842 E049 0.0000000       12 111485109 111485264 156 -      
ENSG00000204842 E050 39.8497941 0.0011764770 1.237733e-01 3.216951e-01 12 111485265 111485270 6 - 1.549 1.632 0.284
ENSG00000204842 E051 133.1857530 0.0106312550 7.536696e-01 8.689394e-01 12 111485271 111485331 61 - 2.112 2.115 0.009
ENSG00000204842 E052 208.1531051 0.0033771646 6.598935e-01 8.099151e-01 12 111485713 111485865 153 - 2.324 2.295 -0.096
ENSG00000204842 E053 131.5316613 0.0045649120 7.309005e-01 8.547524e-01 12 111486761 111486824 64 - 2.122 2.098 -0.080
ENSG00000204842 E054 163.2625329 0.0002779156 5.517435e-01 7.374955e-01 12 111488476 111488584 109 - 2.220 2.197 -0.078
ENSG00000204842 E055 204.0072433 0.0002871173 1.103854e-01 2.996527e-01 12 111488585 111488780 196 - 2.328 2.280 -0.161
ENSG00000204842 E056 110.8829138 0.0004403802 1.978900e-03 1.692774e-02 12 111509549 111509619 71 - 2.104 1.990 -0.381
ENSG00000204842 E057 85.6114374 0.0004553749 7.802566e-02 2.408534e-01 12 111509891 111509918 28 - 1.971 1.895 -0.254
ENSG00000204842 E058 123.2714422 0.0004231745 2.314469e-02 1.064086e-01 12 111509919 111509998 80 - 2.131 2.050 -0.273
ENSG00000204842 E059 110.1921363 0.0003647058 1.460410e-03 1.333680e-02 12 111510385 111510444 60 - 2.104 1.988 -0.388
ENSG00000204842 E060 140.4279830 0.0003263731 1.731290e-02 8.659661e-02 12 111510445 111510577 133 - 2.189 2.109 -0.265
ENSG00000204842 E061 61.1247029 0.0006171526 4.370602e-02 1.643804e-01 12 111510578 111510582 5 - 1.844 1.746 -0.332
ENSG00000204842 E062 4.3304468 0.0061294569 1.118192e-02 6.312572e-02 12 111510583 111512107 1525 - 0.906 0.545 -1.489
ENSG00000204842 E063 0.1614157 0.0345189103 3.100286e-01   12 111512473 111512566 94 - 0.151 0.000 -13.054
ENSG00000204842 E064 1.6261410 0.2811317636 7.874536e-01 8.890467e-01 12 111512567 111513356 790 - 0.354 0.414 0.341
ENSG00000204842 E065 138.4130089 0.0004765072 9.239439e-03 5.486448e-02 12 111513357 111513473 117 - 2.186 2.098 -0.294
ENSG00000204842 E066 102.9001916 0.0038035890 6.053822e-03 3.999371e-02 12 111513474 111513539 66 - 2.082 1.951 -0.437
ENSG00000204842 E067 151.8265980 0.0003431120 1.566427e-01 3.717323e-01 12 111516154 111516363 210 - 2.150 2.186 0.122
ENSG00000204842 E068 0.4161375 0.0910747554 3.452713e-01   12 111516364 111516399 36 - 0.261 0.097 -1.724
ENSG00000204842 E069 146.2706449 0.0007000377 4.605609e-01 6.735720e-01 12 111518249 111518427 179 - 2.144 2.161 0.056
ENSG00000204842 E070 2.3704296 0.0093525105 6.745777e-03 4.344468e-02 12 111519832 111519878 47 - 0.745 0.302 -2.183
ENSG00000204842 E071 85.7306401 0.0007585478 3.048474e-01 5.454250e-01 12 111519879 111519912 34 - 1.957 1.909 -0.161
ENSG00000204842 E072 124.2931868 0.0047548955 1.678870e-01 3.877594e-01 12 111519913 111520004 92 - 2.131 2.057 -0.245
ENSG00000204842 E073 85.0732065 0.0071941981 1.631981e-01 3.814836e-01 12 111520005 111520019 15 - 1.976 1.887 -0.298
ENSG00000204842 E074 126.2427614 0.0013167755 7.487916e-04 7.850962e-03 12 111520020 111520076 57 - 2.167 2.040 -0.426
ENSG00000204842 E075 136.4542862 0.0009733862 2.283625e-07 7.742304e-06 12 111520882 111520973 92 - 2.228 2.049 -0.599
ENSG00000204842 E076 169.5597684 0.0017657553 7.614528e-09 3.674426e-07 12 111525192 111525316 125 - 2.333 2.133 -0.668
ENSG00000204842 E077 167.9068906 0.0002707593 3.178922e-11 2.495858e-09 12 111552280 111552430 151 - 2.325 2.134 -0.636
ENSG00000204842 E078 0.3150090 0.0324612663 7.300451e-01   12 111552431 111552734 304 - 0.150 0.097 -0.720
ENSG00000204842 E079 90.7402648 0.0005678976 1.338771e-04 1.907592e-03 12 111552906 111552977 72 - 2.038 1.885 -0.513
ENSG00000204842 E080 61.4776573 0.0053936530 3.551438e-01 5.918937e-01 12 111554158 111554217 60 - 1.819 1.755 -0.218
ENSG00000204842 E081 35.9071484 0.0009746979 2.432783e-01 4.803299e-01 12 111555883 111555919 37 - 1.602 1.526 -0.257
ENSG00000204842 E082 0.1779838 0.0363743048 3.100169e-01   12 111597749 111597915 167 - 0.151 0.000 -13.055
ENSG00000204842 E083 2.7625159 0.0083070739 8.180295e-01 9.069213e-01 12 111597916 111598566 651 - 0.543 0.575 0.150
ENSG00000204842 E084 47.7564122 0.0008812261 1.243879e-01 3.227342e-01 12 111598784 111599574 791 - 1.632 1.709 0.259
ENSG00000204842 E085 0.3228314 0.4572968916 1.911148e-01   12 111599575 111599676 102 - 0.263 0.000 -14.060