ENSG00000198707

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000547691 ENSG00000198707 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP290 protein_coding protein_coding 6.311153 4.877966 9.723498 0.6902639 0.3739687 0.993724 0.5120551 0.8196425 0.91978642 0.2820770 0.05994227 0.1644096 0.0897250 0.1610000 0.095333333 -0.06566667 5.294871e-01 1.61555e-11 FALSE TRUE
ENST00000552810 ENSG00000198707 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP290 protein_coding protein_coding 6.311153 4.877966 9.723498 0.6902639 0.3739687 0.993724 1.9750831 0.0000000 3.71980642 0.0000000 0.54220410 8.5429569 0.2349125 0.0000000 0.387866667 0.38786667 1.615550e-11 1.61555e-11 FALSE TRUE
ENST00000671777 ENSG00000198707 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP290 protein_coding processed_transcript 6.311153 4.877966 9.723498 0.6902639 0.3739687 0.993724 1.1408850 2.0045108 1.02784885 0.3619534 0.53590331 -0.9568332 0.2518458 0.4101000 0.101933333 -0.30816667 4.108955e-01 1.61555e-11 FALSE TRUE
ENST00000674971 ENSG00000198707 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP290 protein_coding nonsense_mediated_decay 6.311153 4.877966 9.723498 0.6902639 0.3739687 0.993724 0.5463216 0.5323461 1.09593775 0.1787903 0.31835697 1.0279845 0.0769000 0.1030000 0.111300000 0.00830000 1.000000e+00 1.61555e-11 TRUE TRUE
ENST00000675894 ENSG00000198707 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP290 protein_coding retained_intron 6.311153 4.877966 9.723498 0.6902639 0.3739687 0.993724 0.3886292 0.7256092 0.08332907 0.2829048 0.04457249 -2.9785412 0.0957750 0.1645333 0.008466667 -0.15606667 5.873435e-02 1.61555e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000198707 E001 55.1636657 0.8670725189 1.934903e-01 4.214633e-01 12 88049016 88049414 399 - 1.530 1.970 1.488
ENSG00000198707 E002 46.3706605 0.1341955234 2.495465e-02 1.120884e-01 12 88050354 88050433 80 - 1.493 1.863 1.256
ENSG00000198707 E003 52.7820059 0.0060293290 7.861551e-11 5.690845e-09 12 88053652 88053746 95 - 1.532 1.941 1.385
ENSG00000198707 E004 9.5841047 0.0045690193 3.030057e-01 5.435721e-01 12 88053747 88054339 593 - 0.939 1.073 0.495
ENSG00000198707 E005 37.1979702 0.0013154346 2.007861e-06 5.241830e-05 12 88054340 88054413 74 - 1.433 1.733 1.024
ENSG00000198707 E006 15.7328530 0.0022139168 3.450970e-01 5.826862e-01 12 88054414 88055575 1162 - 1.198 1.126 -0.256
ENSG00000198707 E007 59.8404640 0.0007660701 1.534029e-04 2.139213e-03 12 88055576 88055717 142 - 1.673 1.873 0.676
ENSG00000198707 E008 61.2047155 0.0019957498 6.624806e-05 1.059264e-03 12 88058848 88059020 173 - 1.677 1.893 0.731
ENSG00000198707 E009 0.3206185 0.0274424043 6.056419e-01   12 88059021 88059192 172 - 0.147 0.000 -12.125
ENSG00000198707 E010 47.3832226 0.0126395054 6.201466e-03 4.072354e-02 12 88059898 88060020 123 - 1.569 1.782 0.723
ENSG00000198707 E011 52.3206355 0.0007844067 2.597525e-04 3.319933e-03 12 88060830 88060994 165 - 1.613 1.819 0.696
ENSG00000198707 E012 0.0000000       12 88061978 88062113 136 -      
ENSG00000198707 E013 40.2638325 0.0009111747 5.181411e-03 3.556968e-02 12 88062692 88062778 87 - 1.512 1.694 0.618
ENSG00000198707 E014 45.3523617 0.0009308503 2.554348e-01 4.940740e-01 12 88063981 88064115 135 - 1.600 1.684 0.286
ENSG00000198707 E015 8.2986190 0.0039890808 5.238507e-02 1.852061e-01 12 88064116 88067203 3088 - 0.986 0.751 -0.908
ENSG00000198707 E016 0.4842470 0.7867247866 7.036011e-01   12 88068038 88068046 9 - 0.207 0.000 -12.721
ENSG00000198707 E017 35.3760100 0.0027854000 8.111037e-01 9.029378e-01 12 88068522 88068645 124 - 1.507 1.543 0.123
ENSG00000198707 E018 0.1779838 0.0359866730 1.000000e+00   12 88068646 88069095 450 - 0.080 0.000 -11.127
ENSG00000198707 E019 43.3844136 0.0009647931 3.136727e-02 1.314079e-01 12 88071294 88071449 156 - 1.561 1.702 0.481
ENSG00000198707 E020 54.9313498 0.0007687991 3.416333e-03 2.585886e-02 12 88071781 88071926 146 - 1.652 1.818 0.563
ENSG00000198707 E021 47.0790785 0.0008089358 1.309620e-02 7.084044e-02 12 88077222 88077344 123 - 1.591 1.745 0.522
ENSG00000198707 E022 62.1530863 0.0007040861 3.779414e-01 6.105063e-01 12 88077697 88077918 222 - 1.739 1.801 0.212
ENSG00000198707 E023 45.1239547 0.0099865647 5.785039e-01 7.561421e-01 12 88079092 88079229 138 - 1.632 1.605 -0.091
ENSG00000198707 E024 54.7875714 0.0007868696 5.795250e-01 7.568535e-01 12 88080182 88080395 214 - 1.707 1.698 -0.031
ENSG00000198707 E025 49.6579924 0.0007211524 3.206228e-01 5.602360e-01 12 88083031 88083230 200 - 1.642 1.716 0.249
ENSG00000198707 E026 34.1309200 0.0016176639 5.970071e-01 7.683586e-01 12 88083847 88083954 108 - 1.490 1.544 0.185
ENSG00000198707 E027 52.2910251 0.0010157451 2.600247e-01 4.990237e-01 12 88084586 88084852 267 - 1.665 1.744 0.268
ENSG00000198707 E028 36.7816200 0.0010802102 1.995304e-01 4.291177e-01 12 88086039 88086173 135 - 1.510 1.609 0.338
ENSG00000198707 E029 30.5541309 0.0012540907 6.983488e-01 8.345099e-01 12 88086391 88086498 108 - 1.442 1.489 0.162
ENSG00000198707 E030 0.8690291 0.0194264532 6.373909e-02   12 88086499 88086997 499 - 0.147 0.485 2.344
ENSG00000198707 E031 39.4034869 0.0011855579 4.095207e-01 6.357112e-01 12 88087780 88087944 165 - 1.573 1.544 -0.100
ENSG00000198707 E032 60.5070621 0.0036540039 4.500494e-01 6.657201e-01 12 88089032 88089335 304 - 1.752 1.732 -0.069
ENSG00000198707 E033 35.3637388 0.0010441620 1.614297e-01 3.788833e-01 12 88089336 88089487 152 - 1.539 1.467 -0.246
ENSG00000198707 E034 0.1426347 0.0322736552 1.000000e+00   12 88089488 88090727 1240 - 0.080 0.000 -11.123
ENSG00000198707 E035 30.2721295 0.0011605784 1.436973e-01 3.529367e-01 12 88090728 88090839 112 - 1.476 1.392 -0.288
ENSG00000198707 E036 32.3945082 0.0013676813 4.569403e-02 1.692527e-01 12 88092681 88092832 152 - 1.512 1.393 -0.412
ENSG00000198707 E037 0.0000000       12 88093597 88093769 173 -      
ENSG00000198707 E038 41.1530359 0.0009370306 1.430756e-02 7.554733e-02 12 88093770 88093975 206 - 1.615 1.482 -0.455
ENSG00000198707 E039 33.6825593 0.0012768600 4.412367e-02 1.654058e-01 12 88096888 88096999 112 - 1.528 1.410 -0.406
ENSG00000198707 E040 40.2522489 0.0010742569 2.328699e-01 4.684514e-01 12 88102838 88103011 174 - 1.584 1.531 -0.182
ENSG00000198707 E041 10.8597403 0.0033636837 9.458729e-04 9.470049e-03 12 88103012 88106674 3663 - 1.112 0.709 -1.535
ENSG00000198707 E042 38.2447474 0.0013627478 6.200180e-01 7.838407e-01 12 88106675 88106905 231 - 1.554 1.544 -0.034
ENSG00000198707 E043 25.6661230 0.0017786585 2.517998e-01 4.898492e-01 12 88106996 88107098 103 - 1.403 1.334 -0.238
ENSG00000198707 E044 22.5245543 0.0032169733 9.148306e-03 5.448527e-02 12 88109066 88109181 116 - 1.381 1.173 -0.732
ENSG00000198707 E045 12.5651556 0.0042486597 8.955894e-02 2.629979e-01 12 88111202 88111213 12 - 1.132 0.965 -0.609
ENSG00000198707 E046 23.2865855 0.0098311710 1.788514e-03 1.562160e-02 12 88111214 88111301 88 - 1.408 1.124 -0.999
ENSG00000198707 E047 20.4379342 0.0068439109 9.935273e-05 1.485899e-03 12 88111302 88111347 46 - 1.367 0.989 -1.351
ENSG00000198707 E048 13.2174072 0.0223370510 1.699424e-02 8.544073e-02 12 88111348 88111351 4 - 1.176 0.886 -1.065
ENSG00000198707 E049 31.8157865 0.0048860462 2.803535e-02 1.213562e-01 12 88111694 88111858 165 - 1.511 1.364 -0.506
ENSG00000198707 E050 22.5718853 0.0015048215 2.546520e-01 4.931460e-01 12 88114420 88114562 143 - 1.351 1.279 -0.250
ENSG00000198707 E051 17.1244175 0.0025734622 1.349798e-02 7.237291e-02 12 88115098 88115182 85 - 1.274 1.053 -0.788
ENSG00000198707 E052 1.9185830 0.0391805992 9.111673e-02 2.656996e-01 12 88115478 88115570 93 - 0.509 0.180 -2.119
ENSG00000198707 E053 0.9742192 0.0172565867 2.959517e-01   12 88115766 88116533 768 - 0.206 0.406 1.347
ENSG00000198707 E054 22.4157758 0.0017144318 6.638843e-02 2.169299e-01 12 88117033 88117145 113 - 1.362 1.229 -0.466
ENSG00000198707 E055 20.4392064 0.0020109025 8.248334e-03 5.046499e-02 12 88118483 88118570 88 - 1.343 1.125 -0.769
ENSG00000198707 E056 0.0000000       12 88118571 88118642 72 -      
ENSG00000198707 E057 22.6820258 0.0131095410 2.064420e-02 9.816763e-02 12 88118643 88118743 101 - 1.386 1.171 -0.754
ENSG00000198707 E058 0.6897577 0.0288571482 8.960004e-01   12 88118744 88119020 277 - 0.206 0.180 -0.239
ENSG00000198707 E059 1.0291572 0.1035544324 5.162887e-01   12 88119021 88119150 130 - 0.306 0.181 -0.986
ENSG00000198707 E060 0.9972047 0.2288113812 1.535731e-01   12 88119151 88120113 963 - 0.348 0.000 -13.728
ENSG00000198707 E061 13.9910218 0.0136009221 5.672667e-01 7.482308e-01 12 88120114 88120117 4 - 1.151 1.107 -0.160
ENSG00000198707 E062 28.3888321 0.0013786698 4.895053e-01 6.936745e-01 12 88120118 88120276 159 - 1.439 1.410 -0.101
ENSG00000198707 E063 28.5840874 0.0012788711 2.784949e-02 1.208629e-01 12 88120997 88121166 170 - 1.467 1.324 -0.496
ENSG00000198707 E064 27.8529528 0.0016339807 2.326021e-02 1.067831e-01 12 88125246 88125369 124 - 1.455 1.302 -0.530
ENSG00000198707 E065 25.7003682 0.0107367611 2.178919e-02 1.018898e-01 12 88126316 88126438 123 - 1.431 1.241 -0.661
ENSG00000198707 E066 22.5738795 0.0376225991 2.571740e-02 1.144347e-01 12 88128946 88129035 90 - 1.395 1.134 -0.917
ENSG00000198707 E067 26.1021894 0.0154919430 2.630716e-03 2.115623e-02 12 88129694 88129876 183 - 1.457 1.171 -0.999
ENSG00000198707 E068 29.4711115 0.0101651634 3.130150e-03 2.419129e-02 12 88130268 88130420 153 - 1.501 1.255 -0.854
ENSG00000198707 E069 0.8323924 0.0175109733 6.585843e-01   12 88130421 88130544 124 - 0.258 0.180 -0.652
ENSG00000198707 E070 14.5673197 0.0025937314 4.529268e-02 1.683204e-01 12 88130545 88130565 21 - 1.198 1.011 -0.671
ENSG00000198707 E071 2.7301538 0.0096311170 9.743750e-01 9.890751e-01 12 88130566 88130717 152 - 0.535 0.553 0.087
ENSG00000198707 E072 1.9225272 0.0100987447 7.969306e-02 2.442071e-01 12 88130718 88131164 447 - 0.508 0.180 -2.110
ENSG00000198707 E073 17.6817458 0.0019871516 4.521502e-05 7.638069e-04 12 88131165 88131218 54 - 1.314 0.914 -1.444
ENSG00000198707 E074 4.0463606 0.0072626418 5.614611e-01 7.442750e-01 12 88131219 88132999 1781 - 0.685 0.612 -0.314
ENSG00000198707 E075 0.6246688 0.0191961386 2.150011e-01   12 88135853 88136453 601 - 0.257 0.000 -13.124
ENSG00000198707 E076 0.2852693 0.2690196740 7.005814e-01   12 88136454 88136455 2 - 0.145 0.000 -12.101
ENSG00000198707 E077 1.5158259 0.1491192301 4.485115e-02 1.672469e-01 12 88136456 88136642 187 - 0.475 0.000 -14.423
ENSG00000198707 E078 14.8285850 0.0088123362 5.171377e-04 5.831853e-03 12 88136643 88136646 4 - 1.244 0.856 -1.421
ENSG00000198707 E079 29.5219872 0.0014366076 2.323663e-05 4.341638e-04 12 88136647 88136786 140 - 1.515 1.202 -1.088
ENSG00000198707 E080 14.7524088 0.0195808766 2.111421e-02 9.971718e-02 12 88139145 88139191 47 - 1.222 0.965 -0.933
ENSG00000198707 E081 15.2450212 0.0026097631 2.145459e-02 1.008242e-01 12 88139495 88139564 70 - 1.225 1.011 -0.768
ENSG00000198707 E082 15.9865105 0.0047593040 1.749339e-03 1.536570e-02 12 88140956 88141033 78 - 1.256 0.940 -1.141
ENSG00000198707 E083 19.1729080 0.0033461350 2.461606e-03 2.008057e-02 12 88141206 88141334 129 - 1.326 1.053 -0.972
ENSG00000198707 E084 0.1723744 0.0301873147 1.930937e-01   12 88141335 88141617 283 - 0.000 0.180 13.788
ENSG00000198707 E085 0.1779838 0.0359866730 1.000000e+00   12 88141618 88141899 282 - 0.080 0.000 -11.127
ENSG00000198707 E086 14.8612740 0.0063011572 6.836444e-02 2.214262e-01 12 88141900 88142099 200 - 1.208 1.033 -0.630