ENSG00000198589

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000509835 ENSG00000198589 HEK293_OSMI2_6hA HEK293_TMG_6hB LRBA protein_coding protein_coding 13.24218 8.614936 17.34686 3.407694 0.5345207 1.00892 3.6247387 2.75252334 4.5281020 1.16862102 0.25919736 0.7161024 0.27490000 0.32480000 0.261966667 -0.06283333 7.332368e-01 1.742136e-30 FALSE TRUE
ENST00000510157 ENSG00000198589 HEK293_OSMI2_6hA HEK293_TMG_6hB LRBA protein_coding retained_intron 13.24218 8.614936 17.34686 3.407694 0.5345207 1.00892 1.2706745 2.66083397 0.0000000 1.06440758 0.00000000 -8.0611465 0.14268750 0.30256667 0.000000000 -0.30256667 1.742136e-30 1.742136e-30 FALSE TRUE
ENST00000648878 ENSG00000198589 HEK293_OSMI2_6hA HEK293_TMG_6hB LRBA protein_coding protein_coding 13.24218 8.614936 17.34686 3.407694 0.5345207 1.00892 1.1171211 1.11127080 0.0806953 0.55669340 0.04074652 -3.6279632 0.11461250 0.09346667 0.004566667 -0.08890000 2.608309e-01 1.742136e-30 FALSE TRUE
ENST00000651943 ENSG00000198589 HEK293_OSMI2_6hA HEK293_TMG_6hB LRBA protein_coding protein_coding 13.24218 8.614936 17.34686 3.407694 0.5345207 1.00892 2.1209979 1.24978888 3.6079798 0.49013467 0.79764301 1.5220024 0.15352917 0.15940000 0.205833333 0.04643333 8.402515e-01 1.742136e-30 FALSE TRUE
MSTRG.25594.11 ENSG00000198589 HEK293_OSMI2_6hA HEK293_TMG_6hB LRBA protein_coding   13.24218 8.614936 17.34686 3.407694 0.5345207 1.00892 2.0203050 0.00000000 4.2915141 0.00000000 0.72213951 8.7487008 0.11571667 0.00000000 0.250333333 0.25033333 4.128828e-11 1.742136e-30 FALSE TRUE
MSTRG.25594.15 ENSG00000198589 HEK293_OSMI2_6hA HEK293_TMG_6hB LRBA protein_coding   13.24218 8.614936 17.34686 3.407694 0.5345207 1.00892 0.2814859 0.02268478 1.1055948 0.02268478 0.41147631 5.0930504 0.01623333 0.00210000 0.062733333 0.06063333 4.587936e-02 1.742136e-30 FALSE TRUE
MSTRG.25594.7 ENSG00000198589 HEK293_OSMI2_6hA HEK293_TMG_6hB LRBA protein_coding   13.24218 8.614936 17.34686 3.407694 0.5345207 1.00892 1.1761932 0.00000000 1.2160408 0.00000000 0.28139205 6.9378631 0.06728750 0.00000000 0.069266667 0.06926667 6.624596e-07 1.742136e-30 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000198589 E001 5.5319175 0.0053442843 2.847586e-01 5.253046e-01 4 150264435 150264530 96 - 0.733 0.875 0.560
ENSG00000198589 E002 18.2162377 0.0022650811 4.154111e-07 1.316655e-05 4 150264531 150264658 128 - 1.084 1.496 1.447
ENSG00000198589 E003 10.9976292 0.0031159664 1.705459e-06 4.538867e-05 4 150264659 150264660 2 - 0.842 1.323 1.753
ENSG00000198589 E004 12.1231133 0.0028009604 3.122905e-05 5.591957e-04 4 150264661 150264664 4 - 0.919 1.323 1.459
ENSG00000198589 E005 11.5230226 0.0029654208 5.270283e-05 8.706375e-04 4 150264665 150264667 3 - 0.898 1.300 1.457
ENSG00000198589 E006 12.5012425 0.0032500768 7.072413e-05 1.119422e-03 4 150264668 150264688 21 - 0.938 1.324 1.386
ENSG00000198589 E007 17.2487904 0.0021440951 7.830396e-02 2.414097e-01 4 150264689 150264696 8 - 1.160 1.312 0.539
ENSG00000198589 E008 58.7214269 0.0008170896 3.186896e-16 5.667101e-14 4 150264697 150264852 156 - 1.578 1.967 1.314
ENSG00000198589 E009 99.7303247 0.0007460291 6.695392e-20 1.953662e-17 4 150264853 150265025 173 - 1.825 2.170 1.158
ENSG00000198589 E010 218.6140306 0.0018274842 1.093722e-16 2.079946e-14 4 150265026 150265565 540 - 2.198 2.464 0.888
ENSG00000198589 E011 126.5198991 0.0012645531 3.002741e-13 3.404102e-11 4 150265566 150265812 247 - 1.965 2.225 0.873
ENSG00000198589 E012 0.6072928 0.0199684580 3.013764e-01   4 150266399 150266441 43 - 0.141 0.319 1.497
ENSG00000198589 E013 110.4396875 0.0020784942 4.469139e-11 3.406475e-09 4 150277853 150278004 152 - 1.908 2.172 0.885
ENSG00000198589 E014 120.1640883 0.0006276547 1.369019e-11 1.152086e-09 4 150282450 150282646 197 - 1.959 2.192 0.782
ENSG00000198589 E015 80.3057090 0.0005776174 6.163626e-11 4.556924e-09 4 150285933 150286034 102 - 1.767 2.037 0.909
ENSG00000198589 E016 40.8427975 0.0011182716 5.283234e-04 5.933960e-03 4 150302625 150302627 3 - 1.504 1.706 0.689
ENSG00000198589 E017 111.9610538 0.0034297183 1.311769e-03 1.224676e-02 4 150302628 150302792 165 - 1.953 2.103 0.502
ENSG00000198589 E018 120.9884885 0.0037121729 3.591712e-04 4.328687e-03 4 150310229 150310384 156 - 1.984 2.139 0.519
ENSG00000198589 E019 4.1761337 0.0756285012 5.079465e-01 7.063784e-01 4 150310385 150311369 985 - 0.707 0.564 -0.617
ENSG00000198589 E020 2.2431457 0.0091293128 7.831413e-02 2.414215e-01 4 150314723 150315560 838 - 0.544 0.188 -2.202
ENSG00000198589 E021 77.4227118 0.0010466669 1.111672e-02 6.285581e-02 4 150315561 150315610 50 - 1.808 1.918 0.372
ENSG00000198589 E022 55.5799895 0.0007475520 1.336335e-03 1.243240e-02 4 150315611 150315623 13 - 1.649 1.809 0.541
ENSG00000198589 E023 0.1779838 0.0739738017 1.000000e+00   4 150315624 150315634 11 - 0.076 0.000 -8.308
ENSG00000198589 E024 124.6427931 0.0004099681 2.417407e-06 6.159509e-05 4 150321191 150321368 178 - 1.997 2.155 0.531
ENSG00000198589 E025 13.1521707 0.0030738388 5.591717e-01 7.427065e-01 4 150321369 150321383 15 - 1.091 1.146 0.200
ENSG00000198589 E026 74.0943026 0.0007714077 1.446691e-05 2.887311e-04 4 150325809 150325898 90 - 1.763 1.954 0.641
ENSG00000198589 E027 77.4899005 0.0005651615 2.278357e-02 1.052521e-01 4 150349992 150350090 99 - 1.815 1.912 0.328
ENSG00000198589 E028 54.0395870 0.0010273346 7.352837e-02 2.318296e-01 4 150350091 150350159 69 - 1.662 1.754 0.313
ENSG00000198589 E029 0.0000000       4 150353731 150353924 194 -      
ENSG00000198589 E030 72.1940409 0.0014809751 1.329932e-02 7.163571e-02 4 150415438 150415590 153 - 1.776 1.892 0.390
ENSG00000198589 E031 74.1564975 0.0005844695 2.183800e-01 4.514692e-01 4 150435589 150435708 120 - 1.808 1.861 0.176
ENSG00000198589 E032 90.6083169 0.0005755087 9.407206e-01 9.726254e-01 4 150436724 150436864 141 - 1.911 1.910 -0.004
ENSG00000198589 E033 84.9878533 0.0028430689 1.622175e-01 3.800966e-01 4 150467673 150467785 113 - 1.900 1.824 -0.256
ENSG00000198589 E034 84.1581194 0.0009853459 9.429120e-01 9.737489e-01 4 150471624 150471739 116 - 1.880 1.870 -0.032
ENSG00000198589 E035 75.7661337 0.0165837241 6.675816e-01 8.146788e-01 4 150487732 150487834 103 - 1.833 1.830 -0.013
ENSG00000198589 E036 49.2171059 0.0008944863 3.425241e-01 5.802398e-01 4 150490918 150490956 39 - 1.634 1.683 0.165
ENSG00000198589 E037 69.6835248 0.0005958207 2.022679e-01 4.324946e-01 4 150490957 150491035 79 - 1.778 1.834 0.190
ENSG00000198589 E038 0.0000000       4 150581318 150581722 405 -      
ENSG00000198589 E039 0.0000000       4 150582506 150583996 1491 -      
ENSG00000198589 E040 81.5493954 0.0013539180 6.865262e-01 8.268374e-01 4 150588048 150588184 137 - 1.857 1.871 0.048
ENSG00000198589 E041 84.2845915 0.0005394530 5.693611e-01 7.497609e-01 4 150590713 150590859 147 - 1.884 1.854 -0.102
ENSG00000198589 E042 3.4936466 0.1834959525 4.087187e-01 6.350512e-01 4 150597083 150597115 33 - 0.659 0.417 -1.143
ENSG00000198589 E043 76.8591873 0.0005657506 4.893031e-01 6.935327e-01 4 150599007 150599131 125 - 1.834 1.860 0.090
ENSG00000198589 E044 0.0000000       4 150679588 150679667 80 -      
ENSG00000198589 E045 56.4882508 0.0082642347 8.833739e-01 9.430359e-01 4 150683551 150683602 52 - 1.709 1.708 -0.002
ENSG00000198589 E046 80.8110483 0.0034028449 6.803455e-01 8.229401e-01 4 150683603 150683717 115 - 1.870 1.842 -0.093
ENSG00000198589 E047 0.3088520 0.0262924497 4.340142e-01   4 150683845 150683963 119 - 0.076 0.188 1.493
ENSG00000198589 E048 88.2578962 0.0004701754 5.228083e-01 7.169199e-01 4 150735258 150735366 109 - 1.908 1.876 -0.106
ENSG00000198589 E049 71.3992656 0.0008039914 2.491635e-01 4.869351e-01 4 150761783 150761847 65 - 1.823 1.763 -0.202
ENSG00000198589 E050 0.0000000       4 150798077 150798080 4 -      
ENSG00000198589 E051 61.4526259 0.0006846592 8.808456e-01 9.416865e-01 4 150798081 150798142 62 - 1.744 1.733 -0.038
ENSG00000198589 E052 74.0771784 0.0044287452 8.879594e-01 9.455298e-01 4 150806271 150806404 134 - 1.819 1.823 0.016
ENSG00000198589 E053 54.7886500 0.0046110716 4.987964e-01 6.999573e-01 4 150808320 150808398 79 - 1.703 1.661 -0.142
ENSG00000198589 E054 69.2156307 0.0007021381 7.029790e-01 8.374825e-01 4 150817124 150817257 134 - 1.786 1.802 0.053
ENSG00000198589 E055 148.9897912 0.0004677376 1.009703e-02 5.855845e-02 4 150828180 150828621 442 - 2.143 2.050 -0.313
ENSG00000198589 E056 78.0357046 0.0005374101 3.305116e-03 2.522968e-02 4 150831817 150831976 160 - 1.879 1.733 -0.491
ENSG00000198589 E057 0.1723744 0.5412532292 1.783820e-01   4 150840540 150841053 514 - 0.000 0.190 11.280
ENSG00000198589 E058 58.8302065 0.0012465885 4.000971e-02 1.547395e-01 4 150844100 150844207 108 - 1.756 1.636 -0.406
ENSG00000198589 E059 49.5147597 0.0030912465 4.798543e-02 1.749582e-01 4 150844658 150844779 122 - 1.686 1.552 -0.455
ENSG00000198589 E060 63.7567761 0.0059672245 1.365205e-03 1.265105e-02 4 150848818 150848998 181 - 1.808 1.585 -0.755
ENSG00000198589 E061 60.4482970 0.0058204169 7.635864e-05 1.193617e-03 4 150849422 150849575 154 - 1.795 1.517 -0.944
ENSG00000198589 E062 70.3737516 0.0089810764 1.863717e-02 9.118729e-02 4 150850724 150850902 179 - 1.841 1.666 -0.592
ENSG00000198589 E063 220.0604970 0.0023720161 1.498998e-09 8.479826e-08 4 150851885 150852943 1059 - 2.343 2.103 -0.801
ENSG00000198589 E064 54.1994370 0.0011597221 4.507521e-08 1.816949e-06 4 150867671 150867863 193 - 1.758 1.404 -1.208
ENSG00000198589 E065 44.4126718 0.0120660017 6.287502e-04 6.829052e-03 4 150868182 150868305 124 - 1.668 1.362 -1.050
ENSG00000198589 E066 37.4296651 0.0012258912 7.350144e-06 1.606259e-04 4 150870525 150870606 82 - 1.602 1.263 -1.170
ENSG00000198589 E067 43.0082712 0.0009104163 5.349291e-08 2.120029e-06 4 150871345 150871453 109 - 1.668 1.276 -1.348
ENSG00000198589 E068 39.7793386 0.0011063101 2.591278e-09 1.389513e-07 4 150872663 150872755 93 - 1.642 1.179 -1.604
ENSG00000198589 E069 41.6213471 0.0009048306 3.307435e-13 3.719726e-11 4 150893052 150893149 98 - 1.675 1.093 -2.024
ENSG00000198589 E070 44.6305628 0.0008183100 1.328012e-15 2.183223e-13 4 150896394 150896456 63 - 1.708 1.073 -2.209
ENSG00000198589 E071 45.2280305 0.0010466317 7.174016e-11 5.231056e-09 4 150897739 150897818 80 - 1.702 1.223 -1.651
ENSG00000198589 E072 60.6243021 0.0229309376 7.366936e-06 1.609100e-04 4 150900049 150900217 169 - 1.824 1.357 -1.593
ENSG00000198589 E073 44.9663394 0.0011235774 2.720476e-09 1.448728e-07 4 150905838 150905990 153 - 1.692 1.263 -1.476
ENSG00000198589 E074 38.2787941 0.0027396178 4.091442e-07 1.298731e-05 4 150906297 150906405 109 - 1.624 1.222 -1.387
ENSG00000198589 E075 43.5752484 0.0051696198 3.520886e-06 8.529634e-05 4 150908334 150908467 134 - 1.674 1.310 -1.251
ENSG00000198589 E076 56.8368817 0.0289701870 3.109314e-04 3.840799e-03 4 150908660 150908857 198 - 1.786 1.411 -1.279
ENSG00000198589 E077 43.3392881 0.0023343532 2.162716e-05 4.082692e-04 4 150914195 150914341 147 - 1.662 1.355 -1.052
ENSG00000198589 E078 47.9830504 0.0007285899 2.679729e-10 1.734958e-08 4 150915608 150915727 120 - 1.718 1.276 -1.519
ENSG00000198589 E079 39.4752843 0.0011551932 3.612158e-10 2.278706e-08 4 150916401 150916527 127 - 1.643 1.147 -1.724
ENSG00000198589 E080 30.9918340 0.0051512712 3.225497e-06 7.898538e-05 4 150916617 150916738 122 - 1.538 1.111 -1.493
ENSG00000198589 E081 23.7951561 0.0023022426 2.224435e-02 1.034138e-01 4 150921198 150921293 96 - 1.394 1.193 -0.704
ENSG00000198589 E082 38.7144228 0.0010325603 1.655761e-05 3.252745e-04 4 150928516 150928616 101 - 1.614 1.300 -1.082
ENSG00000198589 E083 63.0801498 0.0022002264 7.281177e-07 2.155703e-05 4 150928834 150929065 232 - 1.821 1.517 -1.033
ENSG00000198589 E084 0.0000000       4 151012805 151012828 24 -      
ENSG00000198589 E085 0.7908862 0.0176382848 8.717407e-01   4 151012829 151014426 1598 - 0.248 0.188 -0.505
ENSG00000198589 E086 87.5399987 0.0079729752 1.898067e-07 6.579618e-06 4 151014427 151014861 435 - 1.968 1.604 -1.232
ENSG00000198589 E087 18.9304888 0.0019653227 9.494791e-02 2.728776e-01 4 151015202 151015330 129 - 1.289 1.129 -0.566
ENSG00000198589 E088 9.6667214 0.0030586096 1.084862e-04 1.599952e-03 4 151015473 151015727 255 - 1.077 0.501 -2.336