ENSG00000197563

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000357637 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding protein_coding 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 0.73054361 0.0000000 1.34636625 0.00000000 0.22858206 7.0836030 0.04870000 0.0000000 0.088500000 0.08850000 3.705617e-03 4.426433e-06 FALSE TRUE
ENST00000400334 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding protein_coding 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 1.24756914 0.0000000 2.33450023 0.00000000 0.23753438 7.8731366 0.09615417 0.0000000 0.151266667 0.15126667 4.426433e-06 4.426433e-06 FALSE TRUE
ENST00000638167 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding protein_coding 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 0.18798038 0.2361755 0.44581018 0.13506963 0.44581018 0.8887457 0.05589167 0.1482333 0.029033333 -0.11920000 5.284316e-01 4.426433e-06 FALSE TRUE
ENST00000638183 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding protein_coding 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 1.39258350 0.6075168 2.77423832 0.05302418 0.48272125 2.1727324 0.19147917 0.4098667 0.184000000 -0.22586667 1.874252e-01 4.426433e-06 FALSE TRUE
ENST00000638936 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding protein_coding 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 0.03821839 0.1368895 0.08165085 0.06979971 0.08165085 -0.6805116 0.01378750 0.0842000 0.004933333 -0.07926667 3.269051e-01 4.426433e-06 FALSE TRUE
ENST00000640050 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding protein_coding 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 0.49674495 0.0000000 1.74824441 0.00000000 0.98988704 7.4579918 0.03409167 0.0000000 0.111100000 0.11110000 6.135766e-01 4.426433e-06 FALSE TRUE
ENST00000640170 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding nonsense_mediated_decay 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 0.52534715 0.0000000 0.41729546 0.00000000 0.41729546 5.4171621 0.10735417 0.0000000 0.025266667 0.02526667 1.000000e+00 4.426433e-06 FALSE TRUE
ENST00000640593 ENSG00000197563 HEK293_OSMI2_6hA HEK293_TMG_6hB PIGN protein_coding nonsense_mediated_decay 8.485111 1.535537 15.35238 0.1497325 0.6720814 3.313222 0.66421638 0.0000000 1.47066958 0.00000000 0.22155434 7.2101059 0.05617500 0.0000000 0.097166667 0.09716667 2.000210e-03 4.426433e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000197563 E001 0.0000000       18 61905255 61905492 238 -      
ENSG00000197563 E002 0.1779838 0.0345753571 6.494766e-01   18 62017629 62017741 113 - 0.045 0.000 -8.225
ENSG00000197563 E003 0.7726527 0.7328111629 1.996793e-01   18 62041164 62042470 1307 - 0.118 0.471 2.649
ENSG00000197563 E004 1.4270612 0.3470344576 1.760064e-01 3.984686e-01 18 62042471 62042851 381 - 0.215 0.594 2.191
ENSG00000197563 E005 6.0766377 0.0167559302 5.111665e-03 3.520662e-02 18 62042852 62044232 1381 - 0.584 1.026 1.762
ENSG00000197563 E006 0.2735028 0.0261151521 1.190344e-01   18 62044233 62044233 1 - 0.045 0.291 3.131
ENSG00000197563 E007 0.2735028 0.0261151521 1.190344e-01   18 62044234 62044235 2 - 0.045 0.291 3.131
ENSG00000197563 E008 0.2735028 0.0261151521 1.190344e-01   18 62044236 62044239 4 - 0.045 0.291 3.131
ENSG00000197563 E009 0.2735028 0.0261151521 1.190344e-01   18 62044240 62044241 2 - 0.045 0.291 3.131
ENSG00000197563 E010 0.7367559 0.0643008247 5.013142e-01   18 62044242 62044256 15 - 0.157 0.290 1.132
ENSG00000197563 E011 5.0125268 0.0059892447 3.268548e-01 5.660099e-01 18 62044257 62044300 44 - 0.584 0.762 0.752
ENSG00000197563 E012 5.8291589 0.0056235611 8.765483e-01 9.394581e-01 18 62044301 62044310 10 - 0.652 0.683 0.131
ENSG00000197563 E013 7.5490539 0.0050208084 3.081427e-01 5.487575e-01 18 62044311 62044323 13 - 0.720 0.886 0.654
ENSG00000197563 E014 8.3930251 0.0042743942 2.413988e-01 4.781659e-01 18 62044324 62044349 26 - 0.755 0.937 0.706
ENSG00000197563 E015 19.2201317 0.0019025310 2.815759e-01 5.219018e-01 18 62044350 62044548 199 - 1.087 1.212 0.446
ENSG00000197563 E016 16.6744475 0.0019950190 4.959560e-01 6.981733e-01 18 62044549 62044633 85 - 1.042 1.128 0.309
ENSG00000197563 E017 10.4801451 0.0028932025 7.456556e-01 8.640818e-01 18 62044634 62044635 2 - 0.877 0.828 -0.190
ENSG00000197563 E018 19.6166663 0.0020305460 4.166783e-01 6.411885e-01 18 62044636 62044722 87 - 1.124 1.023 -0.368
ENSG00000197563 E019 45.3711632 0.0007917853 9.563790e-02 2.741598e-01 18 62044723 62045186 464 - 1.442 1.572 0.443
ENSG00000197563 E020 23.2171582 0.0185937796 1.803375e-01 4.044513e-01 18 62045187 62045341 155 - 1.168 1.323 0.546
ENSG00000197563 E021 15.2438132 0.0021599495 7.958265e-01 8.939474e-01 18 62045342 62045368 27 - 1.016 0.982 -0.124
ENSG00000197563 E022 17.2872950 0.0019766734 7.226707e-01 8.497154e-01 18 62045369 62045382 14 - 1.067 1.023 -0.161
ENSG00000197563 E023 26.2721265 0.0014118862 8.215001e-01 9.088455e-01 18 62045383 62045434 52 - 1.234 1.212 -0.078
ENSG00000197563 E024 36.5274778 0.0013061019 9.109394e-01 9.576279e-01 18 62045435 62045512 78 - 1.366 1.379 0.044
ENSG00000197563 E025 25.8613886 0.0077495987 1.486256e-01 3.603302e-01 18 62045513 62045525 13 - 1.206 1.360 0.539
ENSG00000197563 E026 50.4678024 0.0007204835 1.074158e-02 6.129181e-02 18 62045526 62045680 155 - 1.480 1.662 0.620
ENSG00000197563 E027 79.7229946 0.0007229796 2.616661e-01 5.007280e-01 18 62045681 62045979 299 - 1.689 1.759 0.235
ENSG00000197563 E028 5.1332169 0.0351629761 7.661579e-03 4.776483e-02 18 62051788 62052548 761 - 0.533 0.984 1.842
ENSG00000197563 E029 2.5733515 0.0108841182 9.753858e-02 2.774867e-01 18 62052549 62052957 409 - 0.363 0.683 1.549
ENSG00000197563 E030 0.6709767 0.0358582172 3.724831e-01   18 62056722 62056844 123 - 0.123 0.291 1.547
ENSG00000197563 E031 0.1779838 0.0345753571 6.494766e-01   18 62058816 62059020 205 - 0.045 0.000 -9.787
ENSG00000197563 E032 0.0000000       18 62059048 62059168 121 -      
ENSG00000197563 E033 1.1610054 0.0148166254 2.734961e-02   18 62069392 62070389 998 - 0.157 0.588 2.720
ENSG00000197563 E034 2.8384347 0.0194005769 8.980824e-01 9.508538e-01 18 62070390 62070506 117 - 0.437 0.465 0.140
ENSG00000197563 E035 0.2852693 0.2856839371 1.000000e+00   18 62072321 62072365 45 - 0.084 0.000 -10.772
ENSG00000197563 E036 0.3040503 0.0274424043 1.000000e+00   18 62072370 62072672 303 - 0.086 0.000 -10.742
ENSG00000197563 E037 47.4330609 0.0016307819 6.407596e-01 7.974184e-01 18 62072673 62072725 53 - 1.481 1.444 -0.129
ENSG00000197563 E038 50.9558203 0.0022810918 8.296567e-01 9.135724e-01 18 62074779 62074821 43 - 1.507 1.525 0.064
ENSG00000197563 E039 1.2375711 0.0130914307 8.462085e-01   18 62074822 62076027 1206 - 0.246 0.291 0.324
ENSG00000197563 E040 48.9594172 0.0012050916 4.952739e-01 6.976630e-01 18 62082673 62082706 34 - 1.498 1.443 -0.188
ENSG00000197563 E041 46.0569351 0.0028915358 9.086934e-01 9.564424e-01 18 62082707 62082746 40 - 1.467 1.458 -0.030
ENSG00000197563 E042 55.4363981 0.0007233366 7.654787e-01 8.759363e-01 18 62084531 62084606 76 - 1.545 1.525 -0.070
ENSG00000197563 E043 45.7336710 0.0013169462 9.279840e-01 9.660164e-01 18 62085209 62085264 56 - 1.462 1.472 0.033
ENSG00000197563 E044 0.3807181 0.0299756580 1.194537e-01   18 62088391 62088755 365 - 0.045 0.292 3.134
ENSG00000197563 E045 45.2227914 0.0086975945 4.707750e-01 6.806632e-01 18 62088756 62088842 87 - 1.466 1.396 -0.243
ENSG00000197563 E046 44.9484079 0.0092693732 9.804876e-01 9.920002e-01 18 62090476 62090578 103 - 1.457 1.456 -0.005
ENSG00000197563 E047 47.8712910 0.0024390937 5.614252e-01 7.442723e-01 18 62095848 62095950 103 - 1.476 1.524 0.167
ENSG00000197563 E048 45.4808334 0.0009298452 6.774452e-01 8.210996e-01 18 62101075 62101183 109 - 1.461 1.428 -0.113
ENSG00000197563 E049 20.0264904 0.0093768405 8.150927e-01 9.052828e-01 18 62102794 62102810 17 - 1.122 1.096 -0.095
ENSG00000197563 E050 42.8525131 0.0011326956 2.830395e-01 5.234818e-01 18 62102811 62102902 92 - 1.423 1.512 0.306
ENSG00000197563 E051 0.0000000       18 62103589 62103599 11 -      
ENSG00000197563 E052 0.0000000       18 62103719 62103799 81 -      
ENSG00000197563 E053 0.4349185 0.0217681645 2.424146e-01   18 62105040 62105542 503 - 0.086 0.291 2.131
ENSG00000197563 E054 43.1622525 0.0086038843 2.682758e-01 5.079142e-01 18 62105543 62105634 92 - 1.426 1.525 0.339
ENSG00000197563 E055 42.3739701 0.0017134481 8.835355e-02 2.607148e-01 18 62106789 62106881 93 - 1.411 1.549 0.475
ENSG00000197563 E056 48.3348063 0.0034109530 3.447860e-01 5.823232e-01 18 62106986 62107085 100 - 1.492 1.412 -0.276
ENSG00000197563 E057 0.1779838 0.0345753571 6.494766e-01   18 62107086 62107103 18 - 0.045 0.000 -9.787
ENSG00000197563 E058 0.1723744 0.0379501634 3.432883e-02   18 62107468 62107586 119 - 0.000 0.291 14.704
ENSG00000197563 E059 58.4339278 0.0006232826 1.232896e-01 3.209684e-01 18 62109834 62109973 140 - 1.577 1.458 -0.406
ENSG00000197563 E060 0.3228314 0.4312013038 1.000000e+00   18 62109974 62110150 177 - 0.086 0.000 -10.729
ENSG00000197563 E061 0.3559677 0.4509868490 1.000000e+00   18 62112565 62112810 246 - 0.088 0.000 -10.748
ENSG00000197563 E062 0.4986023 0.0341101254 1.000000e+00   18 62112811 62112812 2 - 0.123 0.000 -11.318
ENSG00000197563 E063 1.9800540 0.0176141310 2.278853e-01 4.628426e-01 18 62112813 62113133 321 - 0.364 0.000 -13.120
ENSG00000197563 E064 61.2189208 0.0009941681 4.318683e-01 6.526408e-01 18 62113134 62113316 183 - 1.593 1.537 -0.193
ENSG00000197563 E065 40.1308371 0.0011635749 3.884402e-01 6.192021e-01 18 62114561 62114639 79 - 1.419 1.343 -0.266
ENSG00000197563 E066 0.9396778 0.0172671820 6.173335e-01   18 62118547 62118657 111 - 0.189 0.291 0.813
ENSG00000197563 E067 0.7485225 0.2364761925 1.000000e+00   18 62123507 62123544 38 - 0.186 0.000 -12.053
ENSG00000197563 E068 0.0000000       18 62135653 62135740 88 -      
ENSG00000197563 E069 0.4279040 0.5821411910 1.000000e+00   18 62135741 62136732 992 - 0.119 0.000 -11.165
ENSG00000197563 E070 0.7367559 0.0643008247 5.013142e-01   18 62136733 62137112 380 - 0.157 0.290 1.132
ENSG00000197563 E071 0.7695163 0.0607484921 9.297799e-01   18 62137113 62138242 1130 - 0.188 0.000 -12.045
ENSG00000197563 E072 41.4709959 0.0011416395 1.500351e-01 3.623712e-01 18 62138243 62138298 56 - 1.435 1.303 -0.458
ENSG00000197563 E073 50.8560686 0.0032599691 7.187630e-02 2.285515e-01 18 62138983 62139075 93 - 1.521 1.362 -0.550
ENSG00000197563 E074 42.6821175 0.0061613532 3.146200e-01 5.548223e-01 18 62140420 62140479 60 - 1.441 1.344 -0.335
ENSG00000197563 E075 40.1565531 0.0441863940 9.822398e-01 9.928619e-01 18 62143306 62143346 41 - 1.406 1.407 0.006
ENSG00000197563 E076 44.8757848 0.0103451122 8.899791e-01 9.466722e-01 18 62145909 62145980 72 - 1.456 1.444 -0.041
ENSG00000197563 E077 26.9371726 0.0012614014 3.763989e-01 6.093446e-01 18 62145981 62145992 12 - 1.234 1.323 0.315
ENSG00000197563 E078 37.3792707 0.0010962485 5.149971e-01 7.116560e-01 18 62145993 62146025 33 - 1.382 1.323 -0.204
ENSG00000197563 E079 34.5933444 0.0010131140 1.331558e-02 7.169827e-02 18 62146971 62146995 25 - 1.366 1.096 -0.955
ENSG00000197563 E080 53.4661404 0.0009856379 1.150943e-01 3.076255e-01 18 62146996 62147101 106 - 1.540 1.412 -0.439
ENSG00000197563 E081 35.2719210 0.0032206964 2.887802e-01 5.294307e-01 18 62148214 62148253 40 - 1.364 1.260 -0.365
ENSG00000197563 E082 36.9856429 0.0074759215 7.175851e-01 8.466727e-01 18 62148254 62148338 85 - 1.376 1.343 -0.117
ENSG00000197563 E083 0.0000000       18 62153445 62153568 124 -      
ENSG00000197563 E084 0.7908862 0.0178300963 5.011281e-01   18 62153569 62154544 976 - 0.157 0.291 1.129
ENSG00000197563 E085 27.2508840 0.0181324188 4.353352e-01 6.552271e-01 18 62154545 62154565 21 - 1.256 1.158 -0.345
ENSG00000197563 E086 41.4899510 0.0042723222 7.319354e-02 2.312161e-01 18 62154566 62154651 86 - 1.437 1.260 -0.614
ENSG00000197563 E087 27.9364950 0.0015989264 2.965211e-01 5.370219e-01 18 62157129 62157155 27 - 1.270 1.158 -0.400
ENSG00000197563 E088 33.8271578 0.0110390897 4.433894e-01 6.609714e-01 18 62157156 62157227 72 - 1.345 1.260 -0.295
ENSG00000197563 E089 40.4046671 0.0104400492 4.234509e-01 6.462181e-01 18 62157687 62157779 93 - 1.398 1.474 0.263
ENSG00000197563 E090 30.0331837 0.0108266304 3.066447e-01 5.472741e-01 18 62157780 62157808 29 - 1.271 1.379 0.379
ENSG00000197563 E091 0.3503582 0.0353416461 1.194861e-01   18 62157809 62157980 172 - 0.045 0.291 3.132
ENSG00000197563 E092 0.1723744 0.0379501634 3.432883e-02   18 62157981 62158008 28 - 0.000 0.291 14.704
ENSG00000197563 E093 47.9911794 0.0111225698 6.817422e-01 8.237728e-01 18 62161133 62161226 94 - 1.483 1.444 -0.136
ENSG00000197563 E094 48.5792868 0.0017067256 3.420580e-01 5.798032e-01 18 62161227 62161351 125 - 1.491 1.412 -0.272
ENSG00000197563 E095 28.5389826 0.0016279177 8.805869e-01 9.415568e-01 18 62161352 62161385 34 - 1.265 1.282 0.060
ENSG00000197563 E096 4.4177517 0.0243986058 2.167202e-01 4.495484e-01 18 62162253 62162262 10 - 0.585 0.291 -1.573
ENSG00000197563 E097 7.8489027 0.0224546172 1.319243e-01 3.348445e-01 18 62162263 62162329 67 - 0.786 0.465 -1.418
ENSG00000197563 E098 0.7838716 0.0448075260 9.219602e-01   18 62162330 62162512 183 - 0.189 0.000 -12.026
ENSG00000197563 E099 14.9787175 0.0372877520 4.526663e-01 6.676494e-01 18 62163531 62163656 126 - 1.019 0.886 -0.497
ENSG00000197563 E100 0.1779838 0.0345753571 6.494766e-01   18 62174327 62174430 104 - 0.045 0.000 -9.787
ENSG00000197563 E101 0.0000000       18 62184521 62184671 151 -      
ENSG00000197563 E102 2.3030193 0.0090044652 7.868740e-11 5.693622e-09 18 62186250 62186313 64 - 0.086 1.096 5.718
ENSG00000197563 E103 32.9760132 0.0033750601 4.855594e-01 6.909613e-01 18 62186844 62187022 179 - 1.332 1.261 -0.248
ENSG00000197563 E104 1.5347792 0.6782344259 1.495534e-01 3.616141e-01 18 62187023 62187118 96 - 0.234 0.599 2.055