ENSG00000196924

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000360319 ENSG00000196924 HEK293_OSMI2_6hA HEK293_TMG_6hB FLNA protein_coding protein_coding 145.0673 246.8273 54.19628 24.44082 2.733697 -2.187029 14.94569 26.05556 9.3619351 4.083134 0.9028638 -1.475726 0.11771250 0.10446667 0.171933333 0.06746667 0.01834521 1.204842e-09 FALSE TRUE
ENST00000369856 ENSG00000196924 HEK293_OSMI2_6hA HEK293_TMG_6hB FLNA protein_coding protein_coding 145.0673 246.8273 54.19628 24.44082 2.733697 -2.187029 57.43946 113.21257 27.3900623 12.624356 1.4593704 -2.046911 0.43829167 0.45740000 0.508366667 0.05096667 0.79285056 1.204842e-09 FALSE TRUE
ENST00000444578 ENSG00000196924 HEK293_OSMI2_6hA HEK293_TMG_6hB FLNA protein_coding protein_coding 145.0673 246.8273 54.19628 24.44082 2.733697 -2.187029 21.07809 40.17604 2.8236617 8.045626 0.9621335 -3.825955 0.11367917 0.15966667 0.052266667 -0.10740000 0.07970528 1.204842e-09 FALSE FALSE
ENST00000678304 ENSG00000196924 HEK293_OSMI2_6hA HEK293_TMG_6hB FLNA protein_coding retained_intron 145.0673 246.8273 54.19628 24.44082 2.733697 -2.187029 13.49780 12.04087 0.1249534 3.169666 0.1249534 -6.480533 0.05726250 0.04703333 0.002233333 -0.04480000 0.02732513 1.204842e-09 TRUE TRUE
MSTRG.35102.17 ENSG00000196924 HEK293_OSMI2_6hA HEK293_TMG_6hB FLNA protein_coding   145.0673 246.8273 54.19628 24.44082 2.733697 -2.187029 10.12380 18.28738 3.2867016 1.184698 2.2848233 -2.472542 0.07830833 0.07510000 0.060500000 -0.01460000 0.86272480 1.204842e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000196924 E001 0.1723744 3.729781e-02 1.000000e+00   X 154348524 154348528 5 - 0.000 0.063 8.576
ENSG00000196924 E002 1.0821019 1.482532e-01 3.303986e-01   X 154348529 154348529 1 - 0.000 0.317 11.331
ENSG00000196924 E003 1.0821019 1.482532e-01 3.303986e-01   X 154348530 154348530 1 - 0.000 0.317 11.331
ENSG00000196924 E004 6.4979747 4.969478e-02 5.754636e-02 0.1972687921 X 154348531 154348534 4 - 0.370 0.849 2.175
ENSG00000196924 E005 30.4862757 7.270629e-03 1.295411e-02 0.0702674921 X 154348535 154348554 20 - 1.093 1.444 1.234
ENSG00000196924 E006 262.9256438 6.835411e-01 1.338016e-01 0.3377347186 X 154348555 154348647 93 - 1.858 2.370 1.715
ENSG00000196924 E007 366.0396368 8.095633e-01 1.498778e-01 0.3621149323 X 154348648 154348674 27 - 1.986 2.515 1.767
ENSG00000196924 E008 412.2851736 8.401036e-01 1.443280e-01 0.3538739915 X 154348675 154348690 16 - 2.019 2.567 1.832
ENSG00000196924 E009 904.0688209 1.136353e+00 1.905472e-01 0.4176007210 X 154348691 154348830 140 - 2.339 2.909 1.898
ENSG00000196924 E010 859.1042062 1.184240e+00 2.495649e-01 0.4874167789 X 154348831 154348919 89 - 2.394 2.881 1.625
ENSG00000196924 E011 489.7986475 1.050982e+00 2.994755e-01 0.5398919712 X 154348920 154348921 2 - 2.244 2.630 1.288
ENSG00000196924 E012 1120.5608214 1.314478e+00 3.014872e-01 0.5420054567 X 154348922 154349036 115 - 2.552 2.993 1.469
ENSG00000196924 E013 1748.6456704 1.500676e+00 3.631603e-01 0.5982671987 X 154349362 154349565 204 - 2.788 3.183 1.314
ENSG00000196924 E014 946.3841233 1.312164e+00 3.600548e-01 0.5957561165 X 154349649 154349671 23 - 2.551 2.914 1.208
ENSG00000196924 E015 1910.5439444 1.559165e+00 4.042851e-01 0.6317635046 X 154349672 154349867 196 - 2.865 3.217 1.171
ENSG00000196924 E016 21.7896163 1.316290e-01 8.885644e-01 0.9459308858 X 154349868 154350030 163 - 1.188 1.266 0.278
ENSG00000196924 E017 1769.3364536 1.544217e+00 4.137800e-01 0.6388239328 X 154350031 154350207 177 - 2.846 3.183 1.120
ENSG00000196924 E018 97.3879082 5.141138e-01 5.632210e-01 0.7455540429 X 154350208 154350908 701 - 1.764 1.907 0.480
ENSG00000196924 E019 1520.8615072 1.524558e+00 4.489160e-01 0.6649184501 X 154350909 154351041 133 - 2.819 3.113 0.977
ENSG00000196924 E020 32.3984336 2.436392e-01 7.845642e-01 0.8872710273 X 154351042 154351139 98 - 1.368 1.428 0.208
ENSG00000196924 E021 83.2131692 4.630167e-01 5.922960e-01 0.7651445774 X 154351140 154351580 441 - 1.726 1.834 0.367
ENSG00000196924 E022 1370.0011351 1.501627e+00 4.612592e-01 0.6740012558 X 154351581 154351696 116 - 2.789 3.066 0.920
ENSG00000196924 E023 16.8440196 2.263480e-01 8.905197e-01 0.9469557743 X 154351728 154351883 156 - 1.124 1.155 0.110
ENSG00000196924 E024 1084.2040177 1.410837e+00 4.339063e-01 0.6541325580 X 154351884 154351950 67 - 2.672 2.966 0.979
ENSG00000196924 E025 1054.7086300 1.359958e+00 3.779908e-01 0.6105281143 X 154351951 154352021 71 - 2.608 2.960 1.171
ENSG00000196924 E026 1811.0800783 1.562090e+00 4.288170e-01 0.6502052549 X 154352181 154352447 267 - 2.868 3.192 1.074
ENSG00000196924 E027 3.5037854 5.113855e-01 7.784975e-01 0.8838449552 X 154352538 154352552 15 - 0.371 0.604 1.159
ENSG00000196924 E028 1003.8358343 1.350970e+00 3.830690e-01 0.6147834099 X 154352553 154352675 123 - 2.597 2.937 1.132
ENSG00000196924 E029 13.9564061 1.576692e-01 7.809326e-01 0.8852531628 X 154352676 154352771 96 - 0.950 1.095 0.530
ENSG00000196924 E030 774.8347533 1.266404e+00 3.809034e-01 0.6129530369 X 154352772 154352816 45 - 2.495 2.824 1.096
ENSG00000196924 E031 977.7347466 1.384603e+00 4.406660e-01 0.6592018198 X 154352817 154352883 67 - 2.639 2.920 0.933
ENSG00000196924 E032 782.7614259 1.318816e+00 4.459311e-01 0.6626975688 X 154352884 154352924 41 - 2.558 2.822 0.878
ENSG00000196924 E033 7.5606847 1.147208e-02 5.653425e-01 0.7469344167 X 154352925 154353000 76 - 0.701 0.874 0.685
ENSG00000196924 E034 1480.4905901 1.537423e+00 4.774067e-01 0.6853076001 X 154353001 154353204 204 - 2.836 3.098 0.871
ENSG00000196924 E035 3.0344732 9.929985e-03 6.077901e-01 0.7754068688 X 154353205 154353221 17 - 0.566 0.541 -0.118
ENSG00000196924 E036 528.4000798 1.210802e+00 4.751110e-01 0.6836380345 X 154353296 154353299 4 - 2.428 2.646 0.725
ENSG00000196924 E037 1233.7497931 1.495881e+00 4.973608e-01 0.6991358579 X 154353300 154353457 158 - 2.782 3.015 0.776
ENSG00000196924 E038 1274.7881678 1.508941e+00 5.024850e-01 0.7025056707 X 154353554 154353727 174 - 2.800 3.029 0.763
ENSG00000196924 E039 1024.2290746 1.434515e+00 4.914529e-01 0.6949382754 X 154353915 154354029 115 - 2.704 2.934 0.767
ENSG00000196924 E040 572.8866272 1.239495e+00 4.766328e-01 0.6847268454 X 154354030 154354043 14 - 2.464 2.681 0.723
ENSG00000196924 E041 13.2950784 2.608658e-02 9.843056e-01 0.9940097369 X 154354044 154354150 107 - 0.986 1.069 0.303
ENSG00000196924 E042 1114.7703918 1.489335e-02 2.212014e-01 0.4549426527 X 154354151 154354291 141 - 2.813 2.961 0.493
ENSG00000196924 E043 900.9010806 8.827021e-05 6.154191e-01 0.7805718487 X 154354381 154354483 103 - 2.762 2.866 0.345
ENSG00000196924 E044 913.3733272 2.803363e-03 8.157007e-01 0.9056802438 X 154354616 154354711 96 - 2.773 2.867 0.315
ENSG00000196924 E045 1605.7036981 1.177809e-02 1.731462e-01 0.3946978879 X 154354825 154355072 248 - 3.066 3.102 0.117
ENSG00000196924 E046 516.7842134 1.122146e-02 2.578575e-01 0.4966049875 X 154357251 154357274 24 - 2.568 2.611 0.143
ENSG00000196924 E047 1031.0909601 1.023204e-02 1.324878e-02 0.0714382626 X 154357434 154357540 107 - 2.920 2.899 -0.067
ENSG00000196924 E048 1044.5324877 1.259320e-02 2.799766e-02 0.1212487871 X 154357541 154357623 83 - 2.922 2.906 -0.054
ENSG00000196924 E049 1249.3719982 1.501912e-02 1.114328e-01 0.3013844450 X 154358199 154358355 157 - 2.977 2.988 0.038
ENSG00000196924 E050 1055.6110222 1.417260e-02 1.936901e-01 0.4217217804 X 154358445 154358568 124 - 2.888 2.919 0.101
ENSG00000196924 E051 4.6593266 1.936752e-02 3.983405e-02 0.1543024531 X 154358569 154358664 96 - 0.848 0.597 -1.035
ENSG00000196924 E052 877.7329104 1.994388e-02 1.821866e-01 0.4068574102 X 154358984 154359088 105 - 2.822 2.836 0.046
ENSG00000196924 E053 691.6637926 1.278224e-02 1.676165e-01 0.3873914887 X 154359089 154359150 62 - 2.708 2.735 0.088
ENSG00000196924 E054 405.6028945 7.884181e-03 5.400596e-02 0.1890904422 X 154359151 154359154 4 - 2.493 2.500 0.026
ENSG00000196924 E055 1072.1726398 1.345708e-02 2.057072e-01 0.4367055282 X 154359246 154359406 161 - 2.892 2.926 0.113
ENSG00000196924 E056 1020.9645865 1.700886e-02 3.395900e-01 0.5776263634 X 154359484 154359646 163 - 2.860 2.907 0.156
ENSG00000196924 E057 1111.1340998 2.781749e-02 2.919449e-01 0.5326316637 X 154359732 154359905 174 - 2.917 2.939 0.073
ENSG00000196924 E058 1901.9641511 2.022729e-02 4.088512e-01 0.6351177586 X 154359990 154360587 598 - 3.125 3.178 0.174
ENSG00000196924 E059 439.2608505 1.487473e-02 3.883176e-01 0.6191519952 X 154361308 154361354 47 - 2.490 2.543 0.176
ENSG00000196924 E060 1021.2990543 1.776952e-02 1.778360e-02 0.0883085368 X 154361355 154361570 216 - 2.939 2.889 -0.166
ENSG00000196924 E061 896.9881395 2.030309e-02 2.264180e-03 0.0188217626 X 154361670 154361787 118 - 2.930 2.820 -0.367
ENSG00000196924 E062 1064.6205407 1.889876e-02 1.330690e-03 0.0123886753 X 154361979 154362148 170 - 3.006 2.894 -0.373
ENSG00000196924 E063 724.8668730 1.397706e-02 5.410191e-04 0.0060453665 X 154362242 154362332 91 - 2.832 2.730 -0.340
ENSG00000196924 E064 848.2668270 9.419745e-03 2.825610e-04 0.0035526282 X 154362418 154362578 161 - 2.878 2.804 -0.246
ENSG00000196924 E065 752.9013920 2.094593e-02 5.232025e-02 0.1850693850 X 154362661 154362784 124 - 2.793 2.761 -0.107
ENSG00000196924 E066 839.7914450 2.349815e-02 1.563287e-02 0.0804781240 X 154364022 154364165 144 - 2.876 2.799 -0.256
ENSG00000196924 E067 769.8982403 2.238271e-02 1.723959e-03 0.0151897837 X 154364259 154364372 114 - 2.877 2.750 -0.423
ENSG00000196924 E068 689.7106421 2.069158e-02 1.165846e-03 0.0111689652 X 154364526 154364631 106 - 2.830 2.702 -0.424
ENSG00000196924 E069 653.0191005 1.707632e-02 4.131460e-04 0.0048591792 X 154364632 154364719 88 - 2.805 2.679 -0.421
ENSG00000196924 E070 4.0474670 2.220226e-01 7.123728e-01 0.8432741899 X 154364720 154364820 101 - 0.639 0.613 -0.110
ENSG00000196924 E071 791.8937730 1.860609e-02 1.165874e-03 0.0111689652 X 154364821 154364957 137 - 2.880 2.765 -0.381
ENSG00000196924 E072 786.4837849 1.829310e-02 1.205023e-03 0.0114702459 X 154365136 154365257 122 - 2.875 2.763 -0.375
ENSG00000196924 E073 369.5816857 1.682422e-02 1.253947e-03 0.0118186804 X 154365258 154365259 2 - 2.548 2.436 -0.376
ENSG00000196924 E074 581.7267034 1.508252e-02 1.431294e-03 0.0131231279 X 154365349 154365435 87 - 2.731 2.636 -0.314
ENSG00000196924 E075 425.2535947 9.335953e-03 5.983113e-05 0.0009714793 X 154365436 154365486 51 - 2.603 2.499 -0.347
ENSG00000196924 E076 4.4610995 2.754571e-01 2.040231e-02 0.0973225801 X 154365745 154365801 57 - 0.959 0.529 -1.763
ENSG00000196924 E077 7.1322576 2.652322e-01 1.122667e-01 0.3029197162 X 154365802 154366023 222 - 0.991 0.757 -0.902
ENSG00000196924 E078 602.7575061 1.370201e-02 8.006774e-03 0.0493426140 X 154366024 154366224 201 - 2.713 2.660 -0.177
ENSG00000196924 E079 777.8269021 1.806961e-02 4.437354e-04 0.0051628167 X 154366308 154366470 163 - 2.885 2.754 -0.435
ENSG00000196924 E080 598.0121631 1.936276e-02 5.977672e-04 0.0065582158 X 154366562 154366639 78 - 2.774 2.639 -0.449
ENSG00000196924 E081 1.6829302 1.657148e-02 2.622476e-01 0.5014149203 X 154366640 154366656 17 - 0.479 0.319 -0.891
ENSG00000196924 E082 688.1989234 2.539209e-02 4.362339e-04 0.0050919339 X 154366732 154366850 119 - 2.864 2.690 -0.579
ENSG00000196924 E083 707.2114383 2.579349e-02 6.331201e-04 0.0068675497 X 154367397 154367544 148 - 2.871 2.703 -0.559
ENSG00000196924 E084 495.1144439 2.367030e-02 1.323331e-03 0.0123363920 X 154367641 154367738 98 - 2.698 2.555 -0.478
ENSG00000196924 E085 727.1050290 1.946583e-02 2.021717e-04 0.0026991667 X 154367842 154368090 249 - 2.872 2.719 -0.507
ENSG00000196924 E086 731.4882763 1.789564e-02 2.739126e-05 0.0004984105 X 154370873 154371361 489 - 2.891 2.717 -0.578
ENSG00000196924 E087 13.7065501 3.300968e-02 7.135082e-01 0.8440722852 X 154374506 154374681 176 - 1.042 1.077 0.125