ENSG00000196498

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000404121 ENSG00000196498 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR2 protein_coding protein_coding 22.22822 34.27958 16.57144 7.054078 0.2216984 -1.048201 5.285239 9.271017 1.7510604 2.3881451 0.2287775 -2.397838 0.20358333 0.26360000 0.10573333 -0.15786667 0.000489476 5.378825e-06 FALSE TRUE
ENST00000404621 ENSG00000196498 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR2 protein_coding protein_coding 22.22822 34.27958 16.57144 7.054078 0.2216984 -1.048201 1.329549 2.447245 1.0641329 0.3689708 0.4683812 -1.193869 0.06227083 0.07396667 0.06346667 -0.01050000 0.892693954 5.378825e-06 FALSE TRUE
ENST00000405201 ENSG00000196498 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR2 protein_coding protein_coding 22.22822 34.27958 16.57144 7.054078 0.2216984 -1.048201 4.554117 7.860273 4.2828856 1.6459925 0.3509406 -0.874466 0.20953333 0.22963333 0.25840000 0.02876667 0.851268078 5.378825e-06 FALSE TRUE
ENST00000443451 ENSG00000196498 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR2 protein_coding retained_intron 22.22822 34.27958 16.57144 7.054078 0.2216984 -1.048201 1.700505 2.554572 0.8691108 0.5903249 0.1046762 -1.544601 0.07003333 0.07340000 0.05233333 -0.02106667 0.550601683 5.378825e-06 FALSE TRUE
MSTRG.8277.4 ENSG00000196498 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR2 protein_coding   22.22822 34.27958 16.57144 7.054078 0.2216984 -1.048201 2.084792 2.651483 1.2713735 0.7714919 0.4684166 -1.054539 0.10571250 0.08386667 0.07616667 -0.00770000 0.979171397 5.378825e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000196498 E001 1.6669144 0.0692500294 1.868995e-01 4.129135e-01 12 124324415 124324415 1 - 0.178 0.480 1.998
ENSG00000196498 E002 184.5122700 1.1065767932 3.422340e-01 5.799568e-01 12 124324416 124324597 182 - 1.966 2.294 1.096
ENSG00000196498 E003 570.2538763 1.5348387393 4.305400e-01 6.515631e-01 12 124324598 124325379 782 - 2.480 2.777 0.990
ENSG00000196498 E004 11.5175743 0.1492769931 5.392427e-02 1.889213e-01 12 124325380 124325385 6 - 0.735 1.144 1.544
ENSG00000196498 E005 10.5787721 0.0305595295 2.371915e-02 1.082142e-01 12 124325386 124325396 11 - 0.743 1.107 1.377
ENSG00000196498 E006 9.0023171 0.0062410717 9.462222e-03 5.578988e-02 12 124325397 124325398 2 - 0.658 1.043 1.501
ENSG00000196498 E007 13.2172313 0.0756067721 1.361382e-02 7.283992e-02 12 124325399 124325408 10 - 0.740 1.204 1.738
ENSG00000196498 E008 20.2352423 0.1770771264 3.589445e-02 1.439265e-01 12 124325409 124325419 11 - 0.920 1.375 1.634
ENSG00000196498 E009 29.3756524 0.2093336549 6.371235e-02 2.110691e-01 12 124325420 124325430 11 - 1.087 1.527 1.543
ENSG00000196498 E010 150.1109090 0.9599482238 2.505653e-01 4.886007e-01 12 124325431 124325583 153 - 1.808 2.217 1.370
ENSG00000196498 E011 1.8806751 0.0300575756 9.697773e-01 9.867260e-01 12 124326123 124326179 57 - 0.401 0.423 0.119
ENSG00000196498 E012 3.4280553 0.0073920326 7.059011e-01 8.392837e-01 12 124326180 124326190 11 - 0.548 0.632 0.374
ENSG00000196498 E013 244.6892716 0.0077947328 4.987007e-06 1.148818e-04 12 124326191 124326370 180 - 2.147 2.407 0.867
ENSG00000196498 E014 150.4067764 0.0008581462 3.122666e-04 3.853648e-03 12 124327409 124327546 138 - 2.021 2.182 0.540
ENSG00000196498 E015 158.0231493 0.0003708014 8.395288e-01 9.191210e-01 12 124327547 124327633 87 - 2.145 2.169 0.082
ENSG00000196498 E016 2.7799213 0.0961868114 1.862487e-01 4.121055e-01 12 124327634 124327659 26 - 0.305 0.595 1.528
ENSG00000196498 E017 7.2147185 0.1160021253 4.840934e-02 1.759485e-01 12 124328532 124329157 626 - 1.100 0.742 -1.358
ENSG00000196498 E018 181.3969681 0.0024204591 4.008320e-01 6.289681e-01 12 124330845 124330898 54 - 2.173 2.236 0.210
ENSG00000196498 E019 2.8146911 0.0082158815 1.302393e-01 3.321813e-01 12 124331475 124332318 844 - 0.704 0.484 -0.986
ENSG00000196498 E020 253.8522784 0.0008663705 2.031064e-01 4.334762e-01 12 124332319 124332464 146 - 2.316 2.382 0.220
ENSG00000196498 E021 86.4894421 0.0021511055 6.799019e-02 2.205639e-01 12 124332465 124332467 3 - 1.812 1.928 0.392
ENSG00000196498 E022 226.9319668 0.0018274333 6.745804e-03 4.344468e-02 12 124333130 124333279 150 - 2.227 2.344 0.390
ENSG00000196498 E023 0.5778428 0.1690266483 3.796396e-01   12 124334344 124334423 80 - 0.000 0.213 10.842
ENSG00000196498 E024 193.6234023 0.0004595960 7.153804e-03 4.534320e-02 12 124334424 124334617 194 - 2.168 2.280 0.374
ENSG00000196498 E025 7.4303842 0.0903325397 5.986929e-02 2.024851e-01 12 124334618 124335134 517 - 1.085 0.782 -1.146
ENSG00000196498 E026 152.3146813 0.0076232967 4.657731e-02 1.714995e-01 12 124335135 124335280 146 - 2.042 2.178 0.458
ENSG00000196498 E027 174.8163676 0.0039080228 1.812116e-03 1.578067e-02 12 124335483 124335632 150 - 2.077 2.246 0.567
ENSG00000196498 E028 5.0015001 0.2026333997 6.772796e-01 8.210027e-01 12 124335633 124336392 760 - 0.781 0.726 -0.221
ENSG00000196498 E029 241.0832703 0.0002790151 8.500271e-11 6.111522e-09 12 124336753 124337103 351 - 2.187 2.397 0.704
ENSG00000196498 E030 96.9785989 0.0004920051 3.297169e-06 8.053044e-05 12 124337104 124337180 77 - 1.777 2.010 0.784
ENSG00000196498 E031 54.7480780 0.0006765430 1.250224e-02 6.844070e-02 12 124340006 124340006 1 - 1.580 1.749 0.574
ENSG00000196498 E032 158.7792126 0.0005338458 7.190362e-03 4.553583e-02 12 124340007 124340204 198 - 2.076 2.196 0.399
ENSG00000196498 E033 190.0316624 0.0003149677 2.163095e-01 4.490622e-01 12 124340294 124340443 150 - 2.194 2.260 0.222
ENSG00000196498 E034 132.8578769 0.0003622862 3.132754e-01 5.535159e-01 12 124340602 124340694 93 - 2.042 2.107 0.219
ENSG00000196498 E035 98.4406861 0.0005871588 2.762795e-01 5.162813e-01 12 124340695 124340751 57 - 1.907 1.982 0.253
ENSG00000196498 E036 173.9629504 0.0003099252 5.506961e-02 1.914842e-01 12 124341823 124342074 252 - 2.138 2.229 0.302
ENSG00000196498 E037 157.4548221 0.0003283307 8.180788e-01 9.069394e-01 12 124343005 124343226 222 - 2.132 2.169 0.126
ENSG00000196498 E038 246.0379730 0.0002315704 3.632154e-04 4.370294e-03 12 124344597 124344951 355 - 2.260 2.385 0.417
ENSG00000196498 E039 82.5631681 0.0004757462 3.330157e-02 1.368843e-01 12 124346564 124346592 29 - 1.791 1.918 0.425
ENSG00000196498 E040 218.4542498 0.0002105067 7.859402e-02 2.419613e-01 12 124346593 124346850 258 - 2.244 2.323 0.263
ENSG00000196498 E041 3.6813645 0.1646063598 7.748027e-01 8.816389e-01 12 124347402 124347824 423 - 0.660 0.628 -0.137
ENSG00000196498 E042 128.8986295 0.0011189358 7.585823e-01 8.717161e-01 12 124347825 124347911 87 - 2.059 2.075 0.053
ENSG00000196498 E043 153.8126540 0.0024489750 6.056030e-01 7.739132e-01 12 124348174 124348314 141 - 2.142 2.146 0.014
ENSG00000196498 E044 0.6783511 0.0222410505 2.305661e-01   12 124348315 124348940 626 - 0.000 0.260 11.221
ENSG00000196498 E045 174.6959500 0.0005608680 5.913201e-03 3.931554e-02 12 124350587 124350737 151 - 2.244 2.190 -0.183
ENSG00000196498 E046 139.2858065 0.0073029987 5.501603e-02 1.913822e-01 12 124354093 124354196 104 - 2.158 2.082 -0.255
ENSG00000196498 E047 133.4692731 0.0007662904 8.100614e-03 4.978902e-02 12 124354478 124354582 105 - 2.132 2.068 -0.215
ENSG00000196498 E048 142.4809329 0.0003759457 7.036253e-05 1.114247e-03 12 124354837 124354939 103 - 2.184 2.085 -0.332
ENSG00000196498 E049 0.1723744 0.0525668050 1.000000e+00   12 124355059 124355431 373 - 0.000 0.081 9.221
ENSG00000196498 E050 133.4995604 0.0003559400 1.170477e-05 2.401232e-04 12 124355432 124355571 140 - 2.168 2.053 -0.385
ENSG00000196498 E051 85.4860118 0.0063738974 1.118579e-01 3.022056e-01 12 124356642 124356782 141 - 1.942 1.877 -0.218
ENSG00000196498 E052 28.4445638 0.0042492085 1.611387e-01 3.785037e-01 12 124356783 124356803 21 - 1.483 1.404 -0.274
ENSG00000196498 E053 12.2650388 0.0380210292 2.948161e-01 5.353452e-01 12 124356804 124356806 3 - 1.169 1.047 -0.440
ENSG00000196498 E054 1.8866599 0.0829781935 1.105436e-01 2.998809e-01 12 124356807 124356850 44 - 0.607 0.310 -1.546
ENSG00000196498 E055 83.2501734 0.0009768928 7.984300e-01 8.954086e-01 12 124362126 124362294 169 - 1.873 1.890 0.058
ENSG00000196498 E056 16.6937295 0.0049651022 5.107337e-01 7.085559e-01 12 124362295 124362297 3 - 1.136 1.225 0.317
ENSG00000196498 E057 82.0193680 0.0005546429 7.055662e-01 8.390735e-01 12 124363679 124363799 121 - 1.845 1.892 0.158
ENSG00000196498 E058 159.9120342 0.0055049881 1.501485e-01 3.625884e-01 12 124372022 124372459 438 - 2.193 2.153 -0.133
ENSG00000196498 E059 70.3034409 0.0005543435 3.868576e-02 1.513092e-01 12 124372460 124372610 151 - 1.860 1.797 -0.214
ENSG00000196498 E060 11.7995144 0.0029873683 1.515362e-01 3.645606e-01 12 124374413 124374463 51 - 1.152 1.035 -0.424
ENSG00000196498 E061 109.9595316 0.0004096168 1.283307e-02 6.975345e-02 12 124378237 124378384 148 - 2.048 1.986 -0.206
ENSG00000196498 E062 119.0802542 0.0007113285 1.071594e-04 1.584512e-03 12 124385745 124385887 143 - 2.113 2.002 -0.375
ENSG00000196498 E063 0.0000000       12 124388685 124388824 140 -      
ENSG00000196498 E064 100.4395683 0.0007607180 3.700808e-05 6.455457e-04 12 124398119 124398181 63 - 2.054 1.922 -0.442
ENSG00000196498 E065 152.3642610 0.0003583974 1.760103e-06 4.660939e-05 12 124400501 124400673 173 - 2.228 2.109 -0.396
ENSG00000196498 E066 140.6410693 0.0016902292 1.666653e-03 1.479154e-02 12 124402404 124402558 155 - 2.174 2.084 -0.300
ENSG00000196498 E067 29.5316416 0.0302679121 2.851016e-01 5.257113e-01 12 124402559 124402561 3 - 1.511 1.418 -0.319
ENSG00000196498 E068 49.9096321 0.0149455783 1.687004e-01 3.888702e-01 12 124419957 124419958 2 - 1.726 1.644 -0.279
ENSG00000196498 E069 116.4027075 0.0009829133 8.906639e-07 2.568872e-05 12 124419959 124420055 97 - 2.135 1.982 -0.511
ENSG00000196498 E070 101.9182358 0.0025539181 2.291008e-06 5.878015e-05 12 124422501 124422555 55 - 2.090 1.909 -0.608
ENSG00000196498 E071 108.7173890 0.0036095921 2.989864e-05 5.380393e-04 12 124426622 124426686 65 - 2.110 1.944 -0.557
ENSG00000196498 E072 121.2994804 0.0038362930 6.606654e-06 1.467384e-04 12 124426687 124426800 114 - 2.163 1.988 -0.587
ENSG00000196498 E073 2.4147465 0.0097634088 9.587953e-01 9.813021e-01 12 124429395 124429612 218 - 0.482 0.512 0.150
ENSG00000196498 E074 102.0269045 0.0022690486 1.097444e-03 1.065432e-02 12 124429613 124429703 91 - 2.046 1.933 -0.380
ENSG00000196498 E075 46.9099231 0.0124728260 6.738019e-02 2.191849e-01 12 124429704 124429706 3 - 1.712 1.597 -0.390
ENSG00000196498 E076 0.0000000       12 124430610 124430614 5 -      
ENSG00000196498 E077 67.7465804 0.0007180062 3.629806e-02 1.450409e-01 12 124430615 124430640 26 - 1.842 1.773 -0.234
ENSG00000196498 E078 79.8103199 0.0021552460 1.486194e-03 1.351558e-02 12 124430641 124430685 45 - 1.946 1.823 -0.413
ENSG00000196498 E079 102.4551930 0.0029508506 3.341224e-05 5.918606e-04 12 124430686 124430784 99 - 2.079 1.918 -0.540
ENSG00000196498 E080 55.9306472 0.0096691367 1.657201e-03 1.472227e-02 12 124430785 124430787 3 - 1.834 1.645 -0.639
ENSG00000196498 E081 100.7331666 0.0064251491 4.008828e-05 6.889204e-04 12 124437930 124437996 67 - 2.091 1.896 -0.652
ENSG00000196498 E082 93.1166180 0.0010841869 1.185775e-06 3.290927e-05 12 124449815 124449867 53 - 2.044 1.874 -0.571
ENSG00000196498 E083 79.2685507 0.0055295352 6.991673e-05 1.108427e-03 12 124457106 124457159 54 - 1.985 1.796 -0.635
ENSG00000196498 E084 50.2356262 0.0095140941 3.142452e-03 2.425951e-02 12 124457160 124457162 3 - 1.782 1.603 -0.606
ENSG00000196498 E085 119.9239327 0.0004130796 8.842855e-06 1.886583e-04 12 124466173 124466286 114 - 2.127 2.002 -0.417
ENSG00000196498 E086 142.9460681 0.0020206120 1.609250e-04 2.229282e-03 12 124472952 124473131 180 - 2.196 2.085 -0.371
ENSG00000196498 E087 137.4945386 0.0009182330 6.227831e-06 1.392533e-04 12 124483596 124483773 178 - 2.190 2.065 -0.415
ENSG00000196498 E088 0.0000000       12 124483774 124483774 1 -      
ENSG00000196498 E089 0.2027342 0.0376076632 1.000000e+00   12 124486374 124486440 67 - 0.000 0.081 9.223
ENSG00000196498 E090 114.6513140 0.0003937375 6.205342e-03 4.074585e-02 12 124486441 124486568 128 - 2.071 2.002 -0.231
ENSG00000196498 E091 105.0023555 0.0003995215 8.707338e-02 2.584112e-01 12 124495147 124495368 222 - 2.013 1.979 -0.114
ENSG00000196498 E092 1.5429409 0.0686205008 7.587101e-01 8.717905e-01 12 124518140 124518294 155 - 0.305 0.388 0.505
ENSG00000196498 E093 13.3230380 0.0023595049 4.353810e-01 6.552671e-01 12 124535565 124535611 47 - 1.152 1.103 -0.175
ENSG00000196498 E094 20.7126699 0.0059984102 5.886390e-01 7.627760e-01 12 124567308 124567603 296 - 1.249 1.329 0.281