ENSG00000188352

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000338382 ENSG00000188352 HEK293_OSMI2_6hA HEK293_TMG_6hB FOCAD protein_coding protein_coding 19.97096 15.49928 21.17446 5.087525 0.6284004 0.4498744 7.384225 4.191382 12.2997289 1.6812589 0.6339776 1.5508630 0.3671083 0.25450000 0.58200000 0.32750000 3.464750e-05 3.46475e-05 FALSE TRUE
ENST00000605086 ENSG00000188352 HEK293_OSMI2_6hA HEK293_TMG_6hB FOCAD protein_coding retained_intron 19.97096 15.49928 21.17446 5.087525 0.6284004 0.4498744 6.435671 6.016191 3.5405933 1.8689435 0.5967384 -0.7631863 0.3211958 0.40356667 0.16626667 -0.23730000 1.606729e-03 3.46475e-05 FALSE TRUE
MSTRG.32470.3 ENSG00000188352 HEK293_OSMI2_6hA HEK293_TMG_6hB FOCAD protein_coding   19.97096 15.49928 21.17446 5.087525 0.6284004 0.4498744 2.556029 3.675655 0.6887373 1.2852004 0.1857776 -2.3990989 0.1295083 0.22870000 0.03310000 -0.19560000 3.811679e-05 3.46475e-05   FALSE
MSTRG.32470.5 ENSG00000188352 HEK293_OSMI2_6hA HEK293_TMG_6hB FOCAD protein_coding   19.97096 15.49928 21.17446 5.087525 0.6284004 0.4498744 1.537154 1.112987 2.0966782 0.1707256 0.1513086 0.9076282 0.0801625 0.08543333 0.09906667 0.01363333 8.713447e-01 3.46475e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000188352 E001 0.4397201 0.1018495483 3.516792e-01   9 20658309 20658335 27 + 0.098 0.258 1.681
ENSG00000188352 E002 2.1888775 0.0198361220 8.484006e-01 9.240401e-01 9 20658336 20658345 10 + 0.515 0.485 -0.150
ENSG00000188352 E003 3.0045141 0.0112566401 9.025704e-01 9.531276e-01 9 20658346 20658350 5 + 0.606 0.589 -0.076
ENSG00000188352 E004 21.3182197 0.0226248052 1.470954e-02 7.699952e-02 9 20658351 20658459 109 + 1.220 1.480 0.906
ENSG00000188352 E005 27.4169025 0.0142864493 2.636256e-02 1.163665e-01 9 20658460 20658690 231 + 1.362 1.545 0.632
ENSG00000188352 E006 35.3126450 0.0017000556 2.470317e-04 3.186605e-03 9 20658691 20658826 136 + 1.448 1.670 0.759
ENSG00000188352 E007 14.9999682 0.0418880875 1.146119e-13 1.410250e-11 9 20673620 20673873 254 + 0.479 1.556 4.118
ENSG00000188352 E008 15.8712974 0.0023807040 2.635950e-03 2.118628e-02 9 20684259 20684293 35 + 1.300 1.020 -1.000
ENSG00000188352 E009 1.3461915 0.0390275507 9.803086e-01   9 20694520 20694564 45 + 0.356 0.350 -0.035
ENSG00000188352 E010 52.4590485 0.0008335413 4.183971e-08 1.698624e-06 9 20715322 20715410 89 + 1.805 1.510 -1.006
ENSG00000188352 E011 52.8004509 0.0021958809 1.984842e-05 3.797136e-04 9 20717794 20717868 75 + 1.793 1.557 -0.803
ENSG00000188352 E012 78.0700402 0.0005278641 3.793135e-08 1.558204e-06 9 20720380 20720534 155 + 1.960 1.720 -0.807
ENSG00000188352 E013 0.0000000       9 20726286 20726348 63 +      
ENSG00000188352 E014 0.0000000       9 20726351 20726432 82 +      
ENSG00000188352 E015 58.9921939 0.0079598948 7.017618e-04 7.456378e-03 9 20740236 20740340 105 + 1.837 1.614 -0.755
ENSG00000188352 E016 60.3605414 0.0054132493 2.322097e-02 1.066608e-01 9 20758090 20758191 102 + 1.819 1.684 -0.455
ENSG00000188352 E017 33.2406893 0.0012424964 1.013467e-01 2.842678e-01 9 20764869 20764873 5 + 1.555 1.451 -0.357
ENSG00000188352 E018 98.8185879 0.0004244781 2.925644e-07 9.636184e-06 9 20764874 20765073 200 + 2.049 1.852 -0.662
ENSG00000188352 E019 102.7318908 0.0014977668 5.192215e-06 1.190117e-04 9 20770032 20770238 207 + 2.064 1.880 -0.618
ENSG00000188352 E020 71.5544129 0.0029414477 4.112623e-02 1.576742e-01 9 20778681 20778768 88 + 1.881 1.783 -0.333
ENSG00000188352 E021 104.7038603 0.0005224368 6.410289e-02 2.119040e-01 9 20781727 20781929 203 + 2.029 1.963 -0.221
ENSG00000188352 E022 0.0000000       9 20789334 20789350 17 +      
ENSG00000188352 E023 108.9196036 0.0016922606 3.018256e-02 1.278833e-01 9 20789351 20789608 258 + 2.055 1.969 -0.287
ENSG00000188352 E024 56.1307161 0.0022544272 1.877603e-03 1.624766e-02 9 20819796 20819900 105 + 1.797 1.630 -0.566
ENSG00000188352 E025 0.1779838 0.0374096425 8.266197e-01   9 20820294 20820323 30 + 0.098 0.000 -10.335
ENSG00000188352 E026 61.5050970 0.0006149420 1.529443e-03 1.381273e-02 9 20820324 20820388 65 + 1.832 1.681 -0.510
ENSG00000188352 E027 58.5698881 0.0006970929 4.534566e-03 3.211986e-02 9 20820389 20820425 37 + 1.809 1.670 -0.470
ENSG00000188352 E028 86.3095730 0.0080032009 7.742900e-03 4.810223e-02 9 20820941 20821061 121 + 1.985 1.818 -0.560
ENSG00000188352 E029 41.3162340 0.0105710552 4.946386e-02 1.783314e-01 9 20821062 20821071 10 + 1.664 1.513 -0.516
ENSG00000188352 E030 38.6860797 0.0069888425 1.024474e-01 2.861547e-01 9 20822989 20822992 4 + 1.626 1.511 -0.393
ENSG00000188352 E031 75.1785443 0.0036000381 2.464435e-02 1.110954e-01 9 20822993 20823115 123 + 1.912 1.796 -0.391
ENSG00000188352 E032 83.0543728 0.0064689630 5.403991e-02 1.891664e-01 9 20862578 20862712 135 + 1.954 1.838 -0.390
ENSG00000188352 E033 0.4349185 0.0217681645 9.299526e-01   9 20862713 20863147 435 + 0.178 0.150 -0.296
ENSG00000188352 E034 0.0000000       9 20863421 20863550 130 +      
ENSG00000188352 E035 58.5788932 0.0047504094 8.696581e-02 2.581731e-01 9 20865926 20865976 51 + 1.799 1.694 -0.356
ENSG00000188352 E036 72.0925418 0.0034699906 4.421024e-03 3.149261e-02 9 20866929 20867012 84 + 1.903 1.752 -0.512
ENSG00000188352 E037 0.0000000       9 20872807 20872872 66 +      
ENSG00000188352 E038 0.3040503 0.0274424043 3.936871e-01   9 20873843 20874680 838 + 0.177 0.000 -11.332
ENSG00000188352 E039 81.2738122 0.0012369583 6.277182e-02 2.089724e-01 9 20874681 20874807 127 + 1.929 1.850 -0.268
ENSG00000188352 E040 5.2568375 0.0050025721 1.526278e-02 7.905243e-02 9 20874808 20875815 1008 + 0.893 0.541 -1.464
ENSG00000188352 E041 41.7492854 0.0008989723 3.018073e-01 5.423561e-01 9 20881871 20881905 35 + 1.638 1.581 -0.194
ENSG00000188352 E042 71.2022412 0.0005698139 1.286817e-01 3.297438e-01 9 20881906 20882056 151 + 1.869 1.804 -0.220
ENSG00000188352 E043 43.6167861 0.0030621567 1.768370e-01 3.995235e-01 9 20885109 20885146 38 + 1.669 1.586 -0.283
ENSG00000188352 E044 74.6261122 0.0028771060 2.013388e-01 4.313790e-01 9 20885147 20885230 84 + 1.891 1.826 -0.220
ENSG00000188352 E045 0.4341107 0.0714866130 3.537625e-02   9 20885231 20885529 299 + 0.000 0.348 13.283
ENSG00000188352 E046 0.0000000       9 20896971 20897048 78 +      
ENSG00000188352 E047 80.1134676 0.0008724249 6.149637e-01 7.802556e-01 9 20907150 20907242 93 + 1.902 1.881 -0.068
ENSG00000188352 E048 85.5626642 0.0008823687 4.237445e-01 6.463862e-01 9 20912866 20912954 89 + 1.937 1.906 -0.106
ENSG00000188352 E049 55.2154981 0.0006995640 3.146122e-01 5.548176e-01 9 20916893 20916937 45 + 1.755 1.706 -0.163
ENSG00000188352 E050 83.3178864 0.0013530916 7.361976e-01 8.580871e-01 9 20923660 20923768 109 + 1.912 1.902 -0.032
ENSG00000188352 E051 82.1564158 0.0005062043 4.341874e-01 6.543926e-01 9 20926301 20926417 117 + 1.890 1.924 0.114
ENSG00000188352 E052 0.0000000       9 20927765 20927801 37 +      
ENSG00000188352 E053 0.0000000       9 20927802 20927891 90 +      
ENSG00000188352 E054 0.1614157 0.0348582286 8.267688e-01   9 20928944 20929082 139 + 0.098 0.000 -10.333
ENSG00000188352 E055 157.2845569 0.0003095458 2.340738e-01 4.698158e-01 9 20929358 20929596 239 + 2.170 2.207 0.122
ENSG00000188352 E056 113.7098013 0.0004585489 7.031241e-01 8.376122e-01 9 20933014 20933103 90 + 2.040 2.055 0.051
ENSG00000188352 E057 141.4516518 0.0061166131 5.518263e-01 7.375650e-01 9 20944627 20944774 148 + 2.146 2.131 -0.050
ENSG00000188352 E058 106.7054120 0.0030609290 1.829511e-01 4.077888e-01 9 20946701 20946820 120 + 1.989 2.054 0.218
ENSG00000188352 E059 106.8441358 0.0004216514 2.171048e-01 4.499888e-01 9 20948271 20948393 123 + 1.995 2.041 0.156
ENSG00000188352 E060 0.2027342 0.0294379032 2.975100e-01   9 20948394 20948394 1 + 0.000 0.150 11.712
ENSG00000188352 E061 105.4038202 0.0004661373 4.024411e-01 6.303262e-01 9 20948851 20948928 78 + 1.997 2.028 0.104
ENSG00000188352 E062 109.5422581 0.0022447553 1.221244e-01 3.192269e-01 9 20949604 20949675 72 + 1.998 2.065 0.225
ENSG00000188352 E063 116.8782297 0.0004761797 7.757096e-03 4.815993e-02 9 20950996 20951098 103 + 2.014 2.108 0.314
ENSG00000188352 E064 0.0000000       9 20952420 20952515 96 +      
ENSG00000188352 E065 101.8432102 0.0066744724 1.639026e-02 8.323942e-02 9 20952985 20953065 81 + 1.932 2.076 0.482
ENSG00000188352 E066 0.8428035 0.7728673185 8.254208e-01   9 20957502 20957617 116 + 0.316 0.145 -1.440
ENSG00000188352 E067 0.3807181 0.0256854017 7.242220e-01   9 20976322 20976419 98 + 0.098 0.150 0.707
ENSG00000188352 E068 119.8681477 0.0041575664 5.666308e-04 6.280155e-03 9 20976420 20976548 129 + 1.988 2.159 0.572
ENSG00000188352 E069 116.5029909 0.0006322349 8.547409e-05 1.311879e-03 9 20978339 20978454 116 + 1.993 2.131 0.463
ENSG00000188352 E070 160.4576900 0.0005064239 7.114689e-07 2.113782e-05 9 20981426 20981686 261 + 2.125 2.274 0.498
ENSG00000188352 E071 104.6621842 0.0019429624 2.795970e-04 3.525804e-03 9 20982357 20982446 90 + 1.941 2.092 0.506
ENSG00000188352 E072 168.7249934 0.0006345558 1.266875e-03 1.190749e-02 9 20986288 20986465 178 + 2.170 2.268 0.326
ENSG00000188352 E073 133.9761494 0.0003427044 4.548158e-02 1.687750e-01 9 20988332 20988429 98 + 2.085 2.150 0.219
ENSG00000188352 E074 159.1522814 0.0003693964 1.875239e-05 3.618385e-04 9 20990123 20990374 252 + 2.131 2.258 0.425
ENSG00000188352 E075 108.6683823 0.0010412492 4.468512e-04 5.193731e-03 9 20993253 20993328 76 + 1.965 2.099 0.446
ENSG00000188352 E076 169.4678621 0.0039210782 5.215408e-05 8.627472e-04 9 20995556 20995955 400 + 2.135 2.312 0.592