ENSG00000187555

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000381886 ENSG00000187555 HEK293_OSMI2_6hA HEK293_TMG_6hB USP7 protein_coding protein_coding 53.18825 41.24785 68.36238 6.605878 1.906672 0.7287451 20.108729 13.567535 31.419197 2.4543557 2.0803892 1.2108838 0.34681250 0.32646667 0.45863333 0.13216667 1.878455e-02 1.421586e-13 FALSE TRUE
ENST00000563961 ENSG00000187555 HEK293_OSMI2_6hA HEK293_TMG_6hB USP7 protein_coding nonsense_mediated_decay 53.18825 41.24785 68.36238 6.605878 1.906672 0.7287451 18.024110 16.419154 17.909007 3.7544021 0.5027748 0.1252325 0.35894167 0.38703333 0.26210000 -0.12493333 1.368342e-01 1.421586e-13 FALSE TRUE
ENST00000673704 ENSG00000187555 HEK293_OSMI2_6hA HEK293_TMG_6hB USP7 protein_coding protein_coding 53.18825 41.24785 68.36238 6.605878 1.906672 0.7287451 3.655418 5.207286 2.359307 0.9248546 0.2448368 -1.1388343 0.08995833 0.12556667 0.03446667 -0.09110000 3.347233e-10 1.421586e-13 FALSE TRUE
MSTRG.12015.5 ENSG00000187555 HEK293_OSMI2_6hA HEK293_TMG_6hB USP7 protein_coding   53.18825 41.24785 68.36238 6.605878 1.906672 0.7287451 2.996711 2.554176 2.076735 0.7607928 0.7370415 -0.2972478 0.05507500 0.05893333 0.03020000 -0.02873333 4.854668e-01 1.421586e-13 FALSE TRUE
MSTRG.12015.7 ENSG00000187555 HEK293_OSMI2_6hA HEK293_TMG_6hB USP7 protein_coding   53.18825 41.24785 68.36238 6.605878 1.906672 0.7287451 0.807029 0.000000 4.625602 0.0000000 0.9496427 8.8566130 0.01190417 0.00000000 0.06840000 0.06840000 1.421586e-13 1.421586e-13 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000187555 E001 63.351361 0.0006777168 3.827399e-25 1.981647e-22 16 8892097 8892771 675 - 1.516 2.006 1.658
ENSG00000187555 E002 314.428110 0.0024502629 3.541952e-13 3.962483e-11 16 8892772 8893363 592 - 2.376 2.606 0.766
ENSG00000187555 E003 426.363197 0.0002043168 3.843660e-27 2.463177e-24 16 8893364 8893787 424 - 2.528 2.727 0.661
ENSG00000187555 E004 344.391467 0.0051556910 8.003598e-05 1.241954e-03 16 8893788 8893939 152 - 2.453 2.618 0.549
ENSG00000187555 E005 462.811905 0.0021815690 2.352224e-08 1.015150e-06 16 8893940 8894104 165 - 2.583 2.743 0.533
ENSG00000187555 E006 400.901288 0.0034152448 6.669638e-04 7.155136e-03 16 8894550 8894640 91 - 2.543 2.663 0.399
ENSG00000187555 E007 376.305574 0.0002532564 5.123208e-05 8.494811e-04 16 8894784 8894855 72 - 2.534 2.616 0.273
ENSG00000187555 E008 270.706113 0.0002101085 2.284949e-03 1.895452e-02 16 8895031 8895044 14 - 2.398 2.468 0.236
ENSG00000187555 E009 249.438968 0.0001876130 8.664012e-04 8.821563e-03 16 8895045 8895058 14 - 2.360 2.439 0.264
ENSG00000187555 E010 262.862677 0.0001880880 6.936960e-03 4.434066e-02 16 8895059 8895083 25 - 2.390 2.454 0.212
ENSG00000187555 E011 330.698084 0.0001968224 1.115548e-04 1.636963e-03 16 8895084 8895150 67 - 2.481 2.562 0.271
ENSG00000187555 E012 350.020853 0.0004079764 6.363393e-04 6.894102e-03 16 8895642 8895741 100 - 2.507 2.582 0.251
ENSG00000187555 E013 357.345468 0.0001969091 6.735917e-04 7.212827e-03 16 8896999 8897063 65 - 2.520 2.589 0.232
ENSG00000187555 E014 304.830087 0.0032690328 1.983027e-01 4.274734e-01 16 8897064 8897099 36 - 2.458 2.510 0.173
ENSG00000187555 E015 1.166355 0.0391324271 1.699081e-01   16 8897100 8897254 155 - 0.199 0.446 1.620
ENSG00000187555 E016 402.785830 0.0006781155 5.371727e-01 7.271012e-01 16 8898360 8898437 78 - 2.595 2.613 0.058
ENSG00000187555 E017 2.052877 0.0301727504 7.335480e-01 8.563617e-01 16 8898438 8898530 93 - 0.440 0.498 0.290
ENSG00000187555 E018 345.343052 0.0001579524 6.836408e-02 2.214262e-01 16 8898531 8898593 63 - 2.519 2.558 0.129
ENSG00000187555 E019 305.967627 0.0008452158 1.072974e-02 6.123669e-02 16 8898594 8898639 46 - 2.452 2.517 0.216
ENSG00000187555 E020 1.439975 0.2722427046 4.287934e-01 6.501927e-01 16 8898640 8898720 81 - 0.277 0.457 1.062
ENSG00000187555 E021 239.269551 0.0005590553 3.727176e-03 2.762089e-02 16 8899121 8899149 29 - 2.340 2.417 0.255
ENSG00000187555 E022 253.836138 0.0021123795 5.018825e-03 3.472446e-02 16 8899150 8899174 25 - 2.359 2.449 0.300
ENSG00000187555 E023 200.257841 0.0015483300 9.365068e-03 5.538889e-02 16 8899175 8899188 14 - 2.260 2.343 0.277
ENSG00000187555 E024 7.422254 0.2275743096 9.208535e-01 9.626832e-01 16 8899307 8899579 273 - 0.917 0.933 0.060
ENSG00000187555 E025 3.156491 0.2435935584 9.826533e-01 9.931093e-01 16 8899580 8899603 24 - 0.626 0.617 -0.042
ENSG00000187555 E026 449.960704 0.0004910440 2.269106e-01 4.616503e-01 16 8899604 8899757 154 - 2.640 2.666 0.086
ENSG00000187555 E027 12.276596 0.0864776960 3.158799e-02 1.320232e-01 16 8899758 8900131 374 - 1.253 0.876 -1.375
ENSG00000187555 E028 385.238786 0.0001680136 5.504795e-01 7.366856e-01 16 8900530 8900630 101 - 2.590 2.583 -0.025
ENSG00000187555 E029 16.671564 0.1700953813 6.061544e-02 2.042118e-01 16 8900631 8900920 290 - 1.383 0.995 -1.381
ENSG00000187555 E030 326.397571 0.0008784626 9.640408e-01 9.839063e-01 16 8900990 8901057 68 - 2.514 2.519 0.017
ENSG00000187555 E031 349.312744 0.0002032767 9.850099e-01 9.943194e-01 16 8901142 8901234 93 - 2.542 2.546 0.012
ENSG00000187555 E032 6.840556 0.3325291976 3.872304e-01 6.183124e-01 16 8901933 8902081 149 - 0.967 0.786 -0.693
ENSG00000187555 E033 272.566660 0.0059202349 3.995802e-01 6.279459e-01 16 8902082 8902138 57 - 2.417 2.455 0.128
ENSG00000187555 E034 180.117173 0.0096312484 5.777085e-01 7.555965e-01 16 8902139 8902142 4 - 2.240 2.273 0.112
ENSG00000187555 E035 271.384754 0.0045058950 9.777567e-01 9.906722e-01 16 8902143 8902187 45 - 2.433 2.433 0.002
ENSG00000187555 E036 9.695920 0.0230145230 3.745968e-03 2.772386e-02 16 8902188 8902380 193 - 1.161 0.777 -1.434
ENSG00000187555 E037 313.782313 0.0010995444 6.637176e-01 8.122398e-01 16 8902381 8902482 102 - 2.499 2.491 -0.028
ENSG00000187555 E038 379.033406 0.0033147691 6.338741e-02 2.103208e-01 16 8903268 8903402 135 - 2.606 2.543 -0.210
ENSG00000187555 E039 335.572103 0.0034765730 1.036552e-01 2.882977e-01 16 8904435 8904524 90 - 2.551 2.496 -0.183
ENSG00000187555 E040 265.165905 0.0052162509 1.300198e-01 3.318840e-01 16 8904525 8904565 41 - 2.453 2.390 -0.208
ENSG00000187555 E041 459.310988 0.0029442374 2.999413e-03 2.339561e-02 16 8905187 8905331 145 - 2.702 2.610 -0.305
ENSG00000187555 E042 436.666394 0.0002001884 5.305634e-05 8.756255e-04 16 8906426 8906582 157 - 2.671 2.602 -0.230
ENSG00000187555 E043 322.972635 0.0019188497 2.140755e-02 1.006739e-01 16 8908341 8908450 110 - 2.540 2.473 -0.223
ENSG00000187555 E044 272.250821 0.0067022145 1.894714e-01 4.162992e-01 16 8910745 8910827 83 - 2.464 2.399 -0.216
ENSG00000187555 E045 258.892823 0.0012351180 9.810608e-06 2.062219e-04 16 8915254 8915344 91 - 2.464 2.343 -0.405
ENSG00000187555 E046 252.854580 0.0005808767 7.132968e-10 4.271305e-08 16 8915445 8915525 81 - 2.466 2.312 -0.512
ENSG00000187555 E047 231.537870 0.0002435536 1.817146e-14 2.573755e-12 16 8916502 8916556 55 - 2.439 2.253 -0.620
ENSG00000187555 E048 319.931730 0.0001590183 4.333323e-17 8.719170e-15 16 8917026 8917156 131 - 2.574 2.403 -0.571
ENSG00000187555 E049 306.148580 0.0001843522 2.295561e-11 1.859919e-09 16 8919031 8919139 109 - 2.544 2.406 -0.462
ENSG00000187555 E050 195.398479 0.0023166390 6.630356e-05 1.059902e-03 16 8920359 8920404 46 - 2.351 2.215 -0.455
ENSG00000187555 E051 168.543741 0.0064453606 3.801615e-04 4.539903e-03 16 8920405 8920442 38 - 2.300 2.131 -0.564
ENSG00000187555 E052 118.592063 0.0004011028 3.549472e-10 2.244162e-08 16 8920443 8920447 5 - 2.163 1.953 -0.705
ENSG00000187555 E053 116.945008 0.0004396161 2.045343e-08 8.947613e-07 16 8921157 8921159 3 - 2.150 1.961 -0.633
ENSG00000187555 E054 134.844330 0.0003420329 4.503704e-07 1.412172e-05 16 8921160 8921176 17 - 2.199 2.043 -0.523
ENSG00000187555 E055 227.682013 0.0004932893 4.243462e-09 2.164679e-07 16 8921177 8921295 119 - 2.422 2.274 -0.493
ENSG00000187555 E056 230.824024 0.0002979911 5.193757e-06 1.190310e-04 16 8923215 8923306 92 - 2.412 2.303 -0.364
ENSG00000187555 E057 154.014615 0.0029991571 1.224684e-03 1.161378e-02 16 8923307 8923353 47 - 2.244 2.116 -0.428
ENSG00000187555 E058 141.320964 0.0053114813 3.908271e-03 2.864045e-02 16 8923354 8923413 60 - 2.211 2.074 -0.460
ENSG00000187555 E059 3.035797 0.0080787867 2.401195e-01 4.767419e-01 16 8929369 8929543 175 - 0.681 0.497 -0.828
ENSG00000187555 E060 145.469955 0.0025735752 1.015174e-02 5.877414e-02 16 8930293 8930385 93 - 2.209 2.113 -0.323
ENSG00000187555 E061 68.364107 0.0006628262 2.457145e-03 2.005198e-02 16 8930386 8930397 12 - 1.896 1.766 -0.439
ENSG00000187555 E062 0.000000       16 8935643 8935800 158 -      
ENSG00000187555 E063 0.000000       16 8935801 8935856 56 -      
ENSG00000187555 E064 0.000000       16 8936583 8936729 147 -      
ENSG00000187555 E065 0.000000       16 8949554 8949653 100 -      
ENSG00000187555 E066 0.000000       16 8956308 8956380 73 -      
ENSG00000187555 E067 0.000000       16 8962476 8962612 137 -      
ENSG00000187555 E068 71.115352 0.0015642000 3.207644e-02 1.334407e-01 16 8963207 8963297 91 - 1.899 1.806 -0.317
ENSG00000187555 E069 19.613368 0.0269981696 2.289675e-01 4.639370e-01 16 8963298 8963308 11 - 1.249 1.391 0.497
ENSG00000187555 E070 18.910108 0.0236219782 7.634405e-02 2.374372e-01 16 8963309 8963463 155 - 1.203 1.399 0.686
ENSG00000187555 E071 1.934703 0.0103664660 8.104529e-01 9.024855e-01 16 8963464 8963734 271 - 0.484 0.444 -0.199
ENSG00000187555 E072 2.940075 0.0182729695 4.031263e-01 6.308275e-01 16 8963735 8964012 278 - 0.523 0.660 0.615
ENSG00000187555 E073 0.000000       16 8964394 8964514 121 -      
ENSG00000187555 E074 0.000000       16 8975094 8975328 235 -