ENSG00000184634

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000374080 ENSG00000184634 HEK293_OSMI2_6hA HEK293_TMG_6hB MED12 protein_coding protein_coding 17.55957 28.80464 14.42728 0.9416399 0.346653 -0.9970031 1.1835853 2.206801 0.5302890 1.1119146 0.2747827 -2.0366759 0.06484167 0.07746667 0.03636667 -0.04110000 0.956758241 0.009784928 FALSE TRUE
ENST00000688663 ENSG00000184634 HEK293_OSMI2_6hA HEK293_TMG_6hB MED12 protein_coding nonsense_mediated_decay 17.55957 28.80464 14.42728 0.9416399 0.346653 -0.9970031 1.3265328 1.835118 2.0099860 0.2383872 0.1508447 0.1306325 0.07960417 0.06340000 0.13936667 0.07596667 0.009784928 0.009784928 TRUE TRUE
ENST00000688774 ENSG00000184634 HEK293_OSMI2_6hA HEK293_TMG_6hB MED12 protein_coding nonsense_mediated_decay 17.55957 28.80464 14.42728 0.9416399 0.346653 -0.9970031 1.2401993 2.301791 0.5036133 0.7223269 0.2610844 -2.1702564 0.06769167 0.08036667 0.03580000 -0.04456667 0.749710105 0.009784928 FALSE FALSE
ENST00000690828 ENSG00000184634 HEK293_OSMI2_6hA HEK293_TMG_6hB MED12 protein_coding retained_intron 17.55957 28.80464 14.42728 0.9416399 0.346653 -0.9970031 2.0548303 3.313737 2.5958403 0.4568140 0.6201515 -0.3510576 0.12349167 0.11423333 0.17820000 0.06396667 0.597181202 0.009784928 TRUE TRUE
ENST00000691468 ENSG00000184634 HEK293_OSMI2_6hA HEK293_TMG_6hB MED12 protein_coding protein_coding 17.55957 28.80464 14.42728 0.9416399 0.346653 -0.9970031 3.6536970 5.919571 3.4769878 0.4990934 0.0761962 -0.7659464 0.21432917 0.20673333 0.24133333 0.03460000 0.778894361 0.009784928 FALSE TRUE
ENST00000693391 ENSG00000184634 HEK293_OSMI2_6hA HEK293_TMG_6hB MED12 protein_coding protein_coding 17.55957 28.80464 14.42728 0.9416399 0.346653 -0.9970031 0.9592014 1.973065 0.0000000 0.9872535 0.0000000 -7.6315880 0.04910000 0.06963333 0.00000000 -0.06963333 0.406514463 0.009784928 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000184634 E001 0.5352391 0.3153340280 1.000000e+00   X 71118543 71118555 13 + 0.170 0.208 0.352
ENSG00000184634 E002 2.2597457 0.3092007477 9.009712e-01 9.523406e-01 X 71118556 71118595 40 + 0.524 0.490 -0.161
ENSG00000184634 E003 2.5332485 0.4110855710 8.743548e-01 9.384041e-01 X 71118596 71118598 3 + 0.577 0.515 -0.289
ENSG00000184634 E004 9.1299084 0.0111776019 8.907795e-01 9.470601e-01 X 71118599 71118628 30 + 0.987 0.972 -0.057
ENSG00000184634 E005 11.2014287 0.0030636258 7.907623e-01 8.909600e-01 X 71118629 71118637 9 + 1.029 1.061 0.116
ENSG00000184634 E006 26.7335617 0.0070320103 5.633856e-01 7.456507e-01 X 71118638 71118702 65 + 1.442 1.403 -0.137
ENSG00000184634 E007 17.4348789 0.0029378912 4.830555e-02 1.757293e-01 X 71118703 71118711 9 + 1.349 1.186 -0.573
ENSG00000184634 E008 21.6564092 0.0030630895 7.489331e-02 2.346019e-01 X 71118712 71118724 13 + 1.419 1.283 -0.471
ENSG00000184634 E009 21.5255410 0.0025109024 6.399295e-02 2.116642e-01 X 71118725 71118725 1 + 1.419 1.278 -0.488
ENSG00000184634 E010 49.0723445 0.0015738507 4.113810e-01 6.370852e-01 X 71118726 71118818 93 + 1.699 1.658 -0.139
ENSG00000184634 E011 42.7318349 0.0009919539 5.215314e-01 7.159317e-01 X 71118819 71118853 35 + 1.631 1.598 -0.113
ENSG00000184634 E012 1.1845155 0.0924706184 3.563023e-01   X 71119339 71119372 34 + 0.172 0.362 1.421
ENSG00000184634 E013 69.5962461 0.0005770444 1.634780e-02 8.306351e-02 X 71119373 71119477 105 + 1.885 1.781 -0.350
ENSG00000184634 E014 39.1025797 0.0008921714 2.516589e-03 2.043682e-02 X 71119686 71119690 5 + 1.682 1.510 -0.587
ENSG00000184634 E015 123.0024364 0.0003159686 1.349229e-04 1.919656e-03 X 71119691 71119877 187 + 2.142 2.018 -0.417
ENSG00000184634 E016 120.9167424 0.0003580723 6.060459e-03 4.003133e-02 X 71120014 71120170 157 + 2.112 2.022 -0.303
ENSG00000184634 E017 113.0302715 0.0004798354 2.843955e-02 1.226207e-01 X 71120971 71121139 169 + 2.075 2.000 -0.251
ENSG00000184634 E018 43.8688671 0.0060156752 1.873722e-01 4.135581e-01 X 71121140 71121152 13 + 1.673 1.587 -0.291
ENSG00000184634 E019 73.9049839 0.0005217298 1.120987e-01 3.025915e-01 X 71121327 71121437 111 + 1.885 1.818 -0.223
ENSG00000184634 E020 126.1093903 0.0004143142 5.501107e-02 1.913707e-01 X 71121562 71121816 255 + 2.112 2.050 -0.207
ENSG00000184634 E021 0.4644705 0.0228033401 3.049423e-01   X 71121817 71122199 383 + 0.000 0.216 11.191
ENSG00000184634 E022 107.6284113 0.0035769433 5.188505e-02 1.841749e-01 X 71122200 71122346 147 + 2.058 1.971 -0.291
ENSG00000184634 E023 1.0293295 0.0153787590 8.858531e-01   X 71122347 71122507 161 + 0.294 0.269 -0.174
ENSG00000184634 E024 92.3251645 0.0005687443 1.204672e-02 6.663658e-02 X 71122508 71122607 100 + 2.000 1.905 -0.320
ENSG00000184634 E025 63.6686807 0.0006773952 2.701986e-01 5.101668e-01 X 71122738 71122779 42 + 1.807 1.758 -0.166
ENSG00000184634 E026 89.9542513 0.0033135973 3.997465e-02 1.546487e-01 X 71122780 71122874 95 + 1.983 1.887 -0.323
ENSG00000184634 E027 98.1781121 0.0020757939 5.939076e-02 2.014323e-01 X 71123095 71123226 132 + 2.010 1.931 -0.267
ENSG00000184634 E028 0.5885118 0.0371531362 4.285393e-01   X 71123227 71123475 249 + 0.294 0.155 -1.175
ENSG00000184634 E029 95.5238020 0.0008774463 4.115132e-01 6.371987e-01 X 71123594 71123720 127 + 1.967 1.937 -0.102
ENSG00000184634 E030 5.6070280 0.1237516145 1.725040e-01 3.938103e-01 X 71123721 71124158 438 + 0.942 0.705 -0.932
ENSG00000184634 E031 60.9869592 0.0006722990 3.088006e-01 5.493345e-01 X 71124159 71124183 25 + 1.790 1.744 -0.155
ENSG00000184634 E032 93.9128693 0.0019341771 1.451534e-01 3.551264e-01 X 71124184 71124278 95 + 1.986 1.927 -0.199
ENSG00000184634 E033 88.6534764 0.0012789799 6.180118e-03 4.060534e-02 X 71124279 71124388 110 + 1.995 1.885 -0.371
ENSG00000184634 E034 0.3336024 0.0274424043 5.315615e-01   X 71124389 71124763 375 + 0.000 0.155 10.602
ENSG00000184634 E035 80.3451903 0.0015597414 8.930424e-04 9.038549e-03 X 71124764 71124844 81 + 1.972 1.828 -0.481
ENSG00000184634 E036 0.1308682 0.0308179539 1.000000e+00   X 71124845 71124975 131 + 0.000 0.084 9.598
ENSG00000184634 E037 125.1558429 0.0003757307 4.703371e-05 7.890354e-04 X 71124976 71125146 171 + 2.151 2.018 -0.447
ENSG00000184634 E038 117.0367347 0.0004393875 3.549275e-04 4.286060e-03 X 71125351 71125495 145 + 2.119 1.998 -0.404
ENSG00000184634 E039 62.3107194 0.0007423147 3.704910e-03 2.750148e-02 X 71125663 71125713 51 + 1.859 1.727 -0.447
ENSG00000184634 E040 0.3503582 0.0303533646 5.483459e-01   X 71125955 71126035 81 + 0.172 0.084 -1.177
ENSG00000184634 E041 38.4429592 0.0015458938 1.260788e-01 3.256207e-01 X 71126036 71126043 8 + 1.621 1.532 -0.305
ENSG00000184634 E042 87.8603900 0.0037745752 2.349113e-01 4.707530e-01 X 71126044 71126154 111 + 1.952 1.898 -0.182
ENSG00000184634 E043 1.6998736 0.4922830793 2.843310e-01 5.248332e-01 X 71126155 71126260 106 + 0.542 0.324 -1.162
ENSG00000184634 E044 1.8149814 0.2232219701 7.232245e-02 2.294354e-01 X 71126261 71126340 80 + 0.644 0.273 -1.962
ENSG00000184634 E045 110.3472130 0.0075785825 4.442569e-02 1.661635e-01 X 71126341 71126484 144 + 2.083 1.973 -0.368
ENSG00000184634 E046 7.8375834 0.0965360020 4.703624e-02 1.726204e-01 X 71126485 71126968 484 + 1.116 0.790 -1.224
ENSG00000184634 E047 125.3885507 0.0010105417 1.184381e-02 6.579925e-02 X 71126969 71127132 164 + 2.124 2.036 -0.294
ENSG00000184634 E048 0.4880035 0.2306174956 2.785694e-01   X 71127133 71127241 109 + 0.291 0.086 -2.132
ENSG00000184634 E049 0.4820342 0.0213165099 1.531134e-02   X 71127242 71127335 94 + 0.390 0.000 -13.706
ENSG00000184634 E050 122.3741329 0.0003805876 1.168521e-02 6.516698e-02 X 71127336 71127467 132 + 2.112 2.030 -0.276
ENSG00000184634 E051 14.9283796 0.1987314120 2.358309e-01 4.718034e-01 X 71127468 71127847 380 + 1.268 1.113 -0.550
ENSG00000184634 E052 4.8710799 0.1169594931 1.523203e-01 3.657505e-01 X 71127848 71127850 3 + 0.893 0.649 -0.980
ENSG00000184634 E053 7.2347617 0.1116648773 2.713981e-01 5.113344e-01 X 71127851 71127892 42 + 0.991 0.823 -0.636
ENSG00000184634 E054 60.0015300 0.0007077110 5.783430e-02 1.979596e-01 X 71127893 71127909 17 + 1.810 1.722 -0.298
ENSG00000184634 E055 104.1279796 0.0009478639 5.405189e-01 7.293632e-01 X 71127910 71127997 88 + 1.967 1.995 0.094
ENSG00000184634 E056 75.8263122 0.0011248869 5.687978e-01 7.494056e-01 X 71127998 71128029 32 + 1.829 1.859 0.099
ENSG00000184634 E057 60.2943996 0.0097522822 5.526132e-01 7.381212e-01 X 71128030 71128041 12 + 1.720 1.762 0.143
ENSG00000184634 E058 96.6768230 0.0035565135 8.730892e-01 9.376666e-01 X 71128042 71128120 79 + 1.946 1.956 0.034
ENSG00000184634 E059 136.9556142 0.0006920210 3.127561e-01 5.531192e-01 X 71128296 71128440 145 + 2.127 2.095 -0.105
ENSG00000184634 E060 0.2617363 0.1449783241 5.813958e-01   X 71128441 71128597 157 + 0.000 0.153 10.265
ENSG00000184634 E061 129.6731993 0.0006359836 2.074597e-01 4.387639e-01 X 71128598 71128718 121 + 2.111 2.070 -0.134
ENSG00000184634 E062 6.1447927 0.0072991351 1.663601e-02 8.410768e-02 X 71128719 71128791 73 + 1.009 0.706 -1.174
ENSG00000184634 E063 4.6881068 0.0656953004 1.894745e-01 4.163006e-01 X 71128792 71128853 62 + 0.862 0.649 -0.862
ENSG00000184634 E064 8.3098874 0.2217204016 4.006421e-02 1.548874e-01 X 71128854 71129023 170 + 1.165 0.780 -1.439
ENSG00000184634 E065 7.2796645 0.1357414724 2.136069e-01 4.458947e-01 X 71129024 71129113 90 + 1.013 0.811 -0.766
ENSG00000184634 E066 103.5107150 0.0039968289 3.106007e-01 5.510855e-01 X 71129114 71129182 69 + 2.016 1.974 -0.141
ENSG00000184634 E067 83.0685148 0.0005702101 4.914895e-01 6.949727e-01 X 71129183 71129215 33 + 1.909 1.883 -0.085
ENSG00000184634 E068 9.4294976 0.0661543970 6.694756e-01 8.159465e-01 X 71129216 71129315 100 + 0.917 1.012 0.353
ENSG00000184634 E069 111.3423611 0.0008556253 7.742176e-01 8.812783e-01 X 71129316 71129422 107 + 2.020 2.012 -0.026
ENSG00000184634 E070 52.3796466 0.0007880168 3.701714e-01 6.041107e-01 X 71129423 71129429 7 + 1.719 1.675 -0.149
ENSG00000184634 E071 123.0475873 0.0013798389 7.524206e-01 8.681877e-01 X 71129680 71129855 176 + 2.045 2.060 0.047
ENSG00000184634 E072 6.5940157 0.2914139124 6.299085e-01 7.903899e-01 X 71129856 71130011 156 + 0.837 0.852 0.057
ENSG00000184634 E073 3.2255242 0.1506712403 1.586551e-01 3.747424e-01 X 71130012 71130034 23 + 0.770 0.497 -1.191
ENSG00000184634 E074 137.5915996 0.0020795883 5.168895e-01 7.129549e-01 X 71130035 71130214 180 + 2.120 2.097 -0.078
ENSG00000184634 E075 2.6347114 0.1849526219 2.050081e-01 4.359402e-01 X 71131126 71131233 108 + 0.292 0.608 1.672
ENSG00000184634 E076 2.8958276 0.2085466082 6.236681e-02 2.080850e-01 X 71131234 71131289 56 + 0.171 0.667 2.920
ENSG00000184634 E077 2.0277988 0.0120003529 4.901647e-02 1.772690e-01 X 71131290 71131299 10 + 0.172 0.553 2.404
ENSG00000184634 E078 1.8554244 0.0115150819 6.734247e-02 2.191030e-01 X 71131300 71131301 2 + 0.172 0.526 2.279
ENSG00000184634 E079 2.0277988 0.0120003529 4.901647e-02 1.772690e-01 X 71131302 71131320 19 + 0.172 0.553 2.404
ENSG00000184634 E080 1.6941964 0.1310663591 1.605512e-01 3.776199e-01 X 71131321 71131324 4 + 0.172 0.492 2.110
ENSG00000184634 E081 4.9351733 0.1411307424 7.540745e-01 8.691879e-01 X 71131325 71131446 122 + 0.773 0.724 -0.197
ENSG00000184634 E082 4.3292359 0.1567281742 6.327287e-01 7.921407e-01 X 71131447 71131549 103 + 0.732 0.674 -0.239
ENSG00000184634 E083 98.2609551 0.0004370589 2.254995e-01 4.599233e-01 X 71131550 71131621 72 + 1.991 1.948 -0.145
ENSG00000184634 E084 7.1524691 0.0759203265 8.737094e-01 9.380138e-01 X 71131622 71132072 451 + 0.888 0.876 -0.049
ENSG00000184634 E085 159.6927468 0.0002787160 8.257854e-01 9.113660e-01 X 71132073 71132206 134 + 2.163 2.173 0.034
ENSG00000184634 E086 5.8384045 0.2226871581 2.586158e-01 4.974336e-01 X 71132207 71132376 170 + 0.942 0.733 -0.815
ENSG00000184634 E087 182.2857365 0.0002661554 6.029388e-02 2.034835e-01 X 71132377 71132538 162 + 2.187 2.245 0.195
ENSG00000184634 E088 156.5837964 0.0003294851 2.292030e-01 4.641980e-01 X 71132845 71132956 112 + 2.133 2.174 0.137
ENSG00000184634 E089 140.9513330 0.0007418365 7.519780e-02 2.352335e-01 X 71133123 71133212 90 + 2.073 2.138 0.218
ENSG00000184634 E090 4.6866086 0.2012490722 7.833110e-01 8.865859e-01 X 71133213 71133299 87 + 0.737 0.711 -0.106
ENSG00000184634 E091 123.3171358 0.0004087754 2.772692e-02 1.204880e-01 X 71134357 71134434 78 + 2.002 2.084 0.276
ENSG00000184634 E092 100.3420668 0.0011367883 7.475067e-01 8.652271e-01 X 71134435 71134466 32 + 1.960 1.977 0.056
ENSG00000184634 E093 6.0490625 0.1919461908 3.376762e-01 5.760401e-01 X 71134467 71134712 246 + 0.945 0.745 -0.777
ENSG00000184634 E094 180.6446905 0.0002515652 5.290717e-01 7.213682e-01 X 71134713 71134848 136 + 2.208 2.230 0.072
ENSG00000184634 E095 190.3850733 0.0004598528 3.438160e-03 2.598134e-02 X 71135092 71135253 162 + 2.179 2.269 0.302
ENSG00000184634 E096 3.3255845 0.2155291073 9.186458e-01 9.615117e-01 X 71135254 71135374 121 + 0.591 0.622 0.133
ENSG00000184634 E097 198.8780212 0.0081481912 3.392429e-04 4.131615e-03 X 71136281 71136551 271 + 2.121 2.313 0.640
ENSG00000184634 E098 140.6193817 0.0041489566 1.874483e-05 3.617390e-04 X 71136552 71136655 104 + 1.964 2.165 0.674
ENSG00000184634 E099 120.1190830 0.0041092240 1.120096e-05 2.313806e-04 X 71136879 71136943 65 + 1.884 2.101 0.728
ENSG00000184634 E100 143.0352984 0.0005352859 4.454261e-05 7.543974e-04 X 71136944 71137029 86 + 2.018 2.163 0.486
ENSG00000184634 E101 1.0938684 0.1297704645 3.866253e-01   X 71137137 71137186 50 + 0.171 0.359 1.410
ENSG00000184634 E102 108.4900033 0.0004880939 2.011626e-03 1.714359e-02 X 71137187 71137233 47 + 1.911 2.035 0.415
ENSG00000184634 E103 175.7658696 0.0003086159 1.641298e-03 1.460777e-02 X 71137234 71137383 150 + 2.139 2.238 0.330
ENSG00000184634 E104 33.0956986 0.0012078721 3.568896e-01 5.932022e-01 X 71137384 71137392 9 + 1.450 1.515 0.225
ENSG00000184634 E105 2.3287079 1.0648346946 4.900406e-01 6.940283e-01 X 71137393 71137557 165 + 0.591 0.447 -0.690
ENSG00000184634 E106 59.0018301 0.0064674491 3.669558e-01 6.014655e-01 X 71137558 71137560 3 + 1.696 1.754 0.197
ENSG00000184634 E107 79.9989410 0.0005202056 5.608910e-01 7.439381e-01 X 71137561 71137580 20 + 1.850 1.879 0.096
ENSG00000184634 E108 84.2454000 0.0005795210 1.594005e-01 3.758608e-01 X 71137581 71137635 55 + 1.850 1.914 0.215
ENSG00000184634 E109 0.7685209 0.0172671820 6.555326e-01   X 71137636 71137725 90 + 0.294 0.216 -0.592
ENSG00000184634 E110 74.2455425 0.0005219845 6.322927e-01 7.918545e-01 X 71137726 71137761 36 + 1.826 1.851 0.084
ENSG00000184634 E111 70.8888391 0.0006549924 4.012304e-02 1.550074e-01 X 71137762 71137780 19 + 1.750 1.851 0.339
ENSG00000184634 E112 102.9297011 0.0006007570 1.361666e-01 3.416282e-01 X 71137781 71137855 75 + 1.939 2.000 0.208
ENSG00000184634 E113 122.7586051 0.0016134556 1.016389e-01 2.847208e-01 X 71137856 71137943 88 + 2.010 2.078 0.229
ENSG00000184634 E114 5.5733009 0.1886437418 9.910596e-01 9.972549e-01 X 71137944 71138193 250 + 0.727 0.810 0.330
ENSG00000184634 E115 17.2234397 0.3139026413 4.391962e-01 6.581336e-01 X 71138481 71140634 2154 + 1.239 1.219 -0.070
ENSG00000184634 E116 78.3088980 0.0073976404 7.651667e-02 2.377903e-01 X 71140635 71140647 13 + 1.783 1.896 0.382
ENSG00000184634 E117 135.3687762 0.0004108826 1.098437e-01 2.987744e-01 X 71140648 71140857 210 + 2.061 2.119 0.195
ENSG00000184634 E118 17.4793072 0.0033588631 3.453015e-01 5.828552e-01 X 71141230 71141232 3 + 1.289 1.210 -0.277
ENSG00000184634 E119 78.5535936 0.0010635728 3.726520e-03 2.761723e-02 X 71141233 71141370 138 + 1.765 1.905 0.470
ENSG00000184634 E120 3.8454102 0.0068885902 1.264426e-01 3.261568e-01 X 71141371 71141414 44 + 0.468 0.723 1.146
ENSG00000184634 E121 4.4172836 0.0058330098 1.638284e-01 3.823786e-01 X 71141415 71141882 468 + 0.535 0.758 0.962
ENSG00000184634 E122 91.6130009 0.0065413150 8.257286e-04 8.487847e-03 X 71141883 71141964 82 + 1.786 1.986 0.673
ENSG00000184634 E123 209.6844892 0.0017238636 1.060754e-08 4.950273e-07 X 71142175 71144103 1929 + 2.140 2.341 0.669