ENSG00000183495

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000330386 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding protein_coding 15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 5.5556449 9.991793 0.7245004 1.9845120 0.36229245 -3.7673516 0.28109583 0.38556667 0.06843333 -0.31713333 0.26229712 0.01310257 FALSE TRUE
MSTRG.8330.10 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 1.7155612 2.615027 2.1669901 0.3823276 0.17595415 -0.2699974 0.12122917 0.10276667 0.20463333 0.10186667 0.01310257 0.01310257 FALSE TRUE
MSTRG.8330.11 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 0.7366060 0.770051 0.9408654 0.4668144 0.09359012 0.2856727 0.05795000 0.03470000 0.08900000 0.05430000 0.58653507 0.01310257 FALSE TRUE
MSTRG.8330.12 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 0.2990824 0.000000 0.6516068 0.0000000 0.40066728 6.0479021 0.02149167 0.00000000 0.06106667 0.06106667 0.17230862 0.01310257 FALSE TRUE
MSTRG.8330.14 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 0.9868288 1.839529 1.6329960 0.9257992 0.83485876 -0.1708287 0.06125417 0.07810000 0.15333333 0.07523333 0.95339330 0.01310257 FALSE TRUE
MSTRG.8330.2 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 0.8112162 1.241962 0.7217865 0.6649250 0.72178654 -0.7746959 0.05983750 0.05426667 0.06903333 0.01476667 0.78848308 0.01310257 FALSE TRUE
MSTRG.8330.3 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 1.2073439 1.839991 0.0000000 0.9386942 0.00000000 -7.5313741 0.08394167 0.06536667 0.00000000 -0.06536667 0.40798159 0.01310257 FALSE TRUE
MSTRG.8330.4 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 0.4488748 0.000000 0.8795509 0.0000000 0.44374015 6.4750053 0.04530417 0.00000000 0.08260000 0.08260000 0.16876260 0.01310257 FALSE TRUE
MSTRG.8330.9 ENSG00000183495 HEK293_OSMI2_6hA HEK293_TMG_6hB EP400 protein_coding   15.64293 25.37014 10.57839 2.807159 0.07704013 -1.261217 0.8819558 1.983867 0.2987140 0.9951363 0.29871403 -2.6912264 0.05145833 0.07110000 0.02826667 -0.04283333 0.73920192 0.01310257 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000183495 E001 0.1426347 0.0317316913 2.198520e-01   12 131949916 131949918 3 + 0.168 0.000 -10.185
ENSG00000183495 E002 0.4043710 0.0515772222 9.202469e-01   12 131949919 131949931 13 + 0.168 0.158 -0.107
ENSG00000183495 E003 0.5352391 0.2488053487 9.387096e-01   12 131949932 131949936 5 + 0.167 0.213 0.438
ENSG00000183495 E004 1.0108560 0.0258842377 3.246698e-01   12 131949937 131949941 5 + 0.168 0.365 1.479
ENSG00000183495 E005 2.4267006 0.0090177014 4.667968e-01 6.778645e-01 12 131949942 131949954 13 + 0.584 0.475 -0.515
ENSG00000183495 E006 5.0228116 0.0051054326 5.979443e-01 7.689051e-01 12 131949955 131949962 8 + 0.792 0.733 -0.237
ENSG00000183495 E007 6.5454414 0.0041384452 6.650957e-01 8.131235e-01 12 131949963 131949970 8 + 0.881 0.842 -0.153
ENSG00000183495 E008 12.4944442 0.0042007375 9.951244e-02 2.808812e-01 12 131949971 131950036 66 + 1.195 1.047 -0.532
ENSG00000183495 E009 13.9878116 0.0160443538 2.215966e-01 4.553916e-01 12 131960585 131960692 108 + 1.221 1.103 -0.422
ENSG00000183495 E010 43.2272875 0.0083170647 5.943407e-01 7.665582e-01 12 131960693 131961198 506 + 1.630 1.605 -0.085
ENSG00000183495 E011 113.2689048 0.0050896638 1.682950e-03 1.490035e-02 12 131961199 131961954 756 + 2.115 1.978 -0.461
ENSG00000183495 E012 11.7309041 0.0029078864 1.078047e-01 2.954043e-01 12 131963532 131963642 111 + 1.167 1.021 -0.530
ENSG00000183495 E013 16.1278107 0.0025151941 2.989673e-01 5.394184e-01 12 131979694 131979696 3 + 1.255 1.179 -0.270
ENSG00000183495 E014 57.7784098 0.0016792546 3.262595e-03 2.497245e-02 12 131979697 131979784 88 + 1.827 1.694 -0.449
ENSG00000183495 E015 19.5961255 0.0017761107 2.343346e-02 1.073266e-01 12 131979785 131979793 9 + 1.391 1.227 -0.574
ENSG00000183495 E016 43.5707888 0.0020826230 1.694890e-02 8.527325e-02 12 131981489 131981596 108 + 1.700 1.577 -0.417
ENSG00000183495 E017 80.8254563 0.0032803513 1.377577e-01 3.440684e-01 12 131982093 131982478 386 + 1.924 1.867 -0.193
ENSG00000183495 E018 98.5937602 0.0062755254 9.919684e-04 9.849679e-03 12 131986514 131986807 294 + 2.072 1.916 -0.524
ENSG00000183495 E019 91.7148636 0.0004185069 2.316044e-09 1.259434e-07 12 131987705 131987890 186 + 2.070 1.861 -0.704
ENSG00000183495 E020 93.0239952 0.0004405299 3.591090e-06 8.662626e-05 12 131989964 131990104 141 + 2.049 1.890 -0.534
ENSG00000183495 E021 73.9949405 0.0006283846 9.333020e-02 2.699323e-01 12 131990636 131990714 79 + 1.887 1.831 -0.189
ENSG00000183495 E022 80.1498298 0.0005407190 2.825508e-04 3.552628e-03 12 131991407 131991456 50 + 1.969 1.836 -0.446
ENSG00000183495 E023 84.1899574 0.0004475869 2.299456e-07 7.788205e-06 12 131992173 131992230 58 + 2.023 1.835 -0.631
ENSG00000183495 E024 107.4117616 0.0003642855 8.087759e-06 1.745663e-04 12 131994867 131994956 90 + 2.098 1.956 -0.474
ENSG00000183495 E025 0.4654660 0.0262973199 1.653623e-02   12 131994957 131995012 56 + 0.383 0.000 -14.435
ENSG00000183495 E026 112.4076398 0.0003732706 7.116400e-04 7.541048e-03 12 132005077 132005184 108 + 2.091 1.989 -0.342
ENSG00000183495 E027 118.5801248 0.0004533556 1.354391e-04 1.926193e-03 12 132006112 132006302 191 + 2.121 2.006 -0.385
ENSG00000183495 E028 108.9293908 0.0007862700 1.310906e-09 7.490643e-08 12 132006700 132006877 178 + 2.138 1.933 -0.688
ENSG00000183495 E029 103.5393125 0.0023137660 4.488169e-04 5.212340e-03 12 132011498 132011634 137 + 2.075 1.941 -0.450
ENSG00000183495 E030 108.0117962 0.0046683393 4.004517e-03 2.918458e-02 12 132013009 132013178 170 + 2.087 1.963 -0.418
ENSG00000183495 E031 123.8116523 0.0021181259 1.465607e-03 1.337851e-02 12 132013490 132013664 175 + 2.137 2.028 -0.367
ENSG00000183495 E032 114.7999983 0.0010587027 5.937026e-03 3.943380e-02 12 132013777 132013913 137 + 2.090 2.004 -0.287
ENSG00000183495 E033 113.9160136 0.0003560088 9.313794e-03 5.514211e-02 12 132017535 132017721 187 + 2.081 2.007 -0.247
ENSG00000183495 E034 79.7899851 0.0009619483 1.371571e-01 3.431892e-01 12 132018210 132018376 167 + 1.913 1.866 -0.155
ENSG00000183495 E035 59.2961285 0.0007102031 3.177797e-02 1.325525e-01 12 132020049 132020218 170 + 1.662 1.789 0.432
ENSG00000183495 E036 53.8575733 0.0033617509 2.762709e-02 1.201925e-01 12 132021079 132021321 243 + 1.605 1.755 0.509
ENSG00000183495 E037 66.6884145 0.0031769928 1.535708e-02 7.941975e-02 12 132023777 132023941 165 + 1.696 1.847 0.511
ENSG00000183495 E038 92.8055561 0.0008294782 1.872631e-01 4.134263e-01 12 132025646 132025804 159 + 1.892 1.963 0.240
ENSG00000183495 E039 73.3040485 0.0007345340 1.675476e-01 3.873395e-01 12 132027437 132027531 95 + 1.782 1.862 0.271
ENSG00000183495 E040 151.2021878 0.0010151003 5.903427e-01 7.639543e-01 12 132028017 132028288 272 + 2.153 2.151 -0.008
ENSG00000183495 E041 0.5061644 0.3271019767 9.243276e-01   12 132028946 132029700 755 + 0.168 0.161 -0.081
ENSG00000183495 E042 119.5865630 0.0003525389 3.911550e-02 1.524590e-01 12 132029701 132029903 203 + 2.089 2.035 -0.181
ENSG00000183495 E043 133.0202971 0.0003480961 1.261650e-03 1.187298e-02 12 132029989 132030158 170 + 2.154 2.066 -0.295
ENSG00000183495 E044 173.7177523 0.0018941965 3.147893e-06 7.743115e-05 12 132031953 132032149 197 + 2.305 2.163 -0.475
ENSG00000183495 E045 130.5255975 0.0123119458 8.637620e-03 5.221666e-02 12 132037682 132037793 112 + 2.180 2.038 -0.475
ENSG00000183495 E046 139.6255528 0.0055330077 1.552101e-01 3.697483e-01 12 132037953 132038096 144 + 2.151 2.103 -0.160
ENSG00000183495 E047 140.4486263 0.0045147895 2.321368e-01 4.676661e-01 12 132043304 132043462 159 + 2.146 2.112 -0.115
ENSG00000183495 E048 105.4761423 0.0005474982 1.874704e-02 9.154288e-02 12 132043645 132043728 84 + 2.047 1.978 -0.231
ENSG00000183495 E049 127.2185577 0.0003560053 7.564060e-01 8.704751e-01 12 132044177 132044311 135 + 2.076 2.083 0.023
ENSG00000183495 E050 87.2012681 0.0005425894 8.049585e-01 8.991796e-01 12 132044671 132044715 45 + 1.895 1.921 0.090
ENSG00000183495 E051 143.7860777 0.0003894610 6.481637e-01 8.023097e-01 12 132044800 132044953 154 + 2.128 2.130 0.006
ENSG00000183495 E052 172.8037445 0.0019939457 1.536223e-01 3.674918e-01 12 132045319 132045560 242 + 2.231 2.196 -0.116
ENSG00000183495 E053 164.2291142 0.0021559276 1.848649e-01 4.103080e-01 12 132045727 132045900 174 + 2.207 2.175 -0.108
ENSG00000183495 E054 141.7020114 0.0003355344 7.097671e-01 8.416563e-01 12 132050323 132050459 137 + 2.120 2.125 0.017
ENSG00000183495 E055 78.8639461 0.0027846882 1.775321e-01 4.004813e-01 12 132050599 132050655 57 + 1.811 1.892 0.275
ENSG00000183495 E056 1.5412910 0.0743548211 1.731849e-01 3.947573e-01 12 132050656 132051016 361 + 0.528 0.277 -1.410
ENSG00000183495 E057 57.4947394 0.0082955847 6.792771e-02 2.204328e-01 12 132053146 132053224 79 + 1.637 1.776 0.471
ENSG00000183495 E058 85.0422666 0.0004905081 9.414072e-04 9.432917e-03 12 132053343 132053597 255 + 1.792 1.953 0.543
ENSG00000183495 E059 60.2130032 0.0007737264 4.575370e-03 3.234413e-02 12 132054974 132055019 46 + 1.638 1.802 0.554
ENSG00000183495 E060 105.4726704 0.0004975582 1.804656e-04 2.453830e-03 12 132055099 132055208 110 + 1.876 2.041 0.554
ENSG00000183495 E061 159.6093689 0.0037758552 5.636623e-03 3.792204e-02 12 132062110 132062323 214 + 2.078 2.213 0.451
ENSG00000183495 E062 100.5730321 0.0030451623 1.481758e-01 3.597189e-01 12 132062466 132062594 129 + 1.918 2.004 0.288
ENSG00000183495 E063 78.6711242 0.0006177741 4.985869e-02 1.793090e-01 12 132062595 132062701 107 + 1.802 1.907 0.354
ENSG00000183495 E064 136.8253419 0.0003855713 4.573144e-05 7.708437e-04 12 132064668 132064886 219 + 1.999 2.157 0.531
ENSG00000183495 E065 17.2566716 0.2702940526 3.187324e-01 5.585253e-01 12 132064908 132066773 1866 + 1.306 1.189 -0.412
ENSG00000183495 E066 54.8659298 0.0007283682 1.594695e-03 1.428730e-02 12 132066774 132066794 21 + 1.583 1.772 0.640
ENSG00000183495 E067 144.0252906 0.0004982594 7.195194e-05 1.136026e-03 12 132066795 132066969 175 + 2.023 2.175 0.512
ENSG00000183495 E068 3.5023803 0.3627932705 7.579928e-01 8.713151e-01 12 132066970 132067361 392 + 0.459 0.687 1.041
ENSG00000183495 E069 125.8461072 0.0031367984 9.282404e-04 9.323194e-03 12 132067362 132067486 125 + 1.957 2.119 0.545
ENSG00000183495 E070 9.5503323 0.1135585700 9.073816e-01 9.557952e-01 12 132068099 132069494 1396 + 0.981 0.996 0.056
ENSG00000183495 E071 127.4893180 0.0021325333 5.115177e-07 1.578261e-05 12 132069495 132069641 147 + 1.912 2.142 0.772
ENSG00000183495 E072 9.8354882 0.2484027946 4.265266e-01 6.484478e-01 12 132075701 132076515 815 + 0.799 1.070 1.021
ENSG00000183495 E073 92.0934696 0.0022986580 4.647196e-05 7.814642e-04 12 132076516 132076593 78 + 1.788 2.000 0.715
ENSG00000183495 E074 1521.0262277 0.0012411250 8.617370e-20 2.455416e-17 12 132077401 132080460 3060 + 3.029 3.197 0.559