ENSG00000178950

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000314167 ENSG00000178950 HEK293_OSMI2_6hA HEK293_TMG_6hB GAK protein_coding protein_coding 38.35781 56.71351 22.36204 5.846326 1.110144 -1.34225 14.645215 23.549378 8.3431771 5.1883059 0.7502397 -1.4959045 0.38969583 0.40383333 0.37796667 -0.02586667 9.643032e-01 2.505356e-11 FALSE TRUE
ENST00000504668 ENSG00000178950 HEK293_OSMI2_6hA HEK293_TMG_6hB GAK protein_coding nonsense_mediated_decay 38.35781 56.71351 22.36204 5.846326 1.110144 -1.34225 3.703752 3.100186 0.0000000 0.7193958 0.0000000 -8.2808570 0.06313333 0.05323333 0.00000000 -0.05323333 2.505356e-11 2.505356e-11 FALSE TRUE
ENST00000504947 ENSG00000178950 HEK293_OSMI2_6hA HEK293_TMG_6hB GAK protein_coding retained_intron 38.35781 56.71351 22.36204 5.846326 1.110144 -1.34225 1.811884 2.641361 1.3237611 0.5215657 0.3117733 -0.9912328 0.05453750 0.04926667 0.06046667 0.01120000 9.181500e-01 2.505356e-11   FALSE
ENST00000511163 ENSG00000178950 HEK293_OSMI2_6hA HEK293_TMG_6hB GAK protein_coding protein_coding 38.35781 56.71351 22.36204 5.846326 1.110144 -1.34225 1.678293 4.120684 0.5382689 0.8665530 0.5382689 -2.9134252 0.03936667 0.07793333 0.02200000 -0.05593333 3.119327e-01 2.505356e-11 FALSE TRUE
MSTRG.24428.10 ENSG00000178950 HEK293_OSMI2_6hA HEK293_TMG_6hB GAK protein_coding   38.35781 56.71351 22.36204 5.846326 1.110144 -1.34225 2.091731 1.926980 3.3248084 1.9269805 0.6765333 0.7837945 0.07575000 0.04273333 0.14673333 0.10400000 2.173728e-01 2.505356e-11 FALSE TRUE
MSTRG.24428.11 ENSG00000178950 HEK293_OSMI2_6hA HEK293_TMG_6hB GAK protein_coding   38.35781 56.71351 22.36204 5.846326 1.110144 -1.34225 1.812616 2.993472 0.0000000 1.5066265 0.0000000 -8.2304872 0.05012500 0.04796667 0.00000000 -0.04796667 4.039307e-01 2.505356e-11 FALSE TRUE
MSTRG.24428.15 ENSG00000178950 HEK293_OSMI2_6hA HEK293_TMG_6hB GAK protein_coding   38.35781 56.71351 22.36204 5.846326 1.110144 -1.34225 3.094954 4.725220 0.8079379 2.1426778 0.3357766 -2.5333682 0.06779167 0.07933333 0.03706667 -0.04226667 6.276480e-01 2.505356e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000178950 E001 0.5067846 0.0207786756 1.313139e-01   4 849276 849276 1 - 0.327 0.074 -2.595
ENSG00000178950 E002 0.5668842 0.3651910369 7.406957e-01   4 849277 849277 1 - 0.194 0.142 -0.535
ENSG00000178950 E003 1.4485897 0.3501966153 8.820937e-01 9.424097e-01 4 849278 849280 3 - 0.325 0.340 0.094
ENSG00000178950 E004 9.9781112 0.0065132664 1.350803e-02 7.240068e-02 4 849281 849283 3 - 0.693 1.035 1.326
ENSG00000178950 E005 11.3108030 0.0031977444 2.425016e-03 1.984978e-02 4 849284 849289 6 - 0.693 1.097 1.549
ENSG00000178950 E006 12.1915987 0.0028118262 1.591495e-02 8.148099e-02 4 849290 849299 10 - 0.820 1.116 1.102
ENSG00000178950 E007 28.7530232 0.0014476060 3.704876e-03 2.750148e-02 4 849300 849306 7 - 1.223 1.462 0.832
ENSG00000178950 E008 29.7761230 0.0012496415 1.692134e-03 1.496762e-02 4 849307 849307 1 - 1.223 1.478 0.888
ENSG00000178950 E009 41.7922514 0.0025268300 2.808478e-01 5.211028e-01 4 849308 849317 10 - 1.518 1.592 0.251
ENSG00000178950 E010 94.5055281 0.0034098594 6.245669e-03 4.093467e-02 4 849318 849396 79 - 1.805 1.948 0.483
ENSG00000178950 E011 142.8877070 0.0003450454 3.465145e-04 4.204197e-03 4 849397 849462 66 - 1.994 2.124 0.435
ENSG00000178950 E012 220.6912677 0.0016827513 5.785496e-07 1.763732e-05 4 849463 849577 115 - 2.143 2.322 0.597
ENSG00000178950 E013 335.0276424 0.0007338653 7.668150e-11 5.572222e-09 4 849578 849774 197 - 2.324 2.500 0.587
ENSG00000178950 E014 422.9257466 0.0002291003 9.304220e-08 3.480331e-06 4 849892 850068 177 - 2.476 2.590 0.381
ENSG00000178950 E015 14.3453766 0.1222653964 7.080705e-01 8.405566e-01 4 850069 850409 341 - 1.074 1.138 0.232
ENSG00000178950 E016 11.8669668 0.1454264326 9.730612e-01 9.884860e-01 4 850410 850935 526 - 1.038 1.056 0.068
ENSG00000178950 E017 349.4499872 0.0001837351 7.400949e-02 2.328011e-01 4 850936 851017 82 - 2.451 2.491 0.133
ENSG00000178950 E018 290.0590487 0.0025918060 1.404712e-01 3.482516e-01 4 851018 851084 67 - 2.360 2.412 0.173
ENSG00000178950 E019 45.8476754 0.0869029361 4.575858e-01 6.715052e-01 4 851085 851749 665 - 1.668 1.582 -0.293
ENSG00000178950 E020 293.1120128 0.0031737051 1.094430e-02 6.213122e-02 4 851750 851852 103 - 2.332 2.427 0.316
ENSG00000178950 E021 327.0052075 0.0030887527 2.893220e-01 5.298502e-01 4 851853 851974 122 - 2.423 2.461 0.125
ENSG00000178950 E022 25.2640259 0.1012281452 4.729332e-01 6.821091e-01 4 851975 853828 1854 - 1.421 1.332 -0.308
ENSG00000178950 E023 4.4700968 0.1211555829 4.399803e-01 6.586866e-01 4 859362 859493 132 - 0.814 0.659 -0.634
ENSG00000178950 E024 298.2770761 0.0055737099 4.323603e-02 1.631780e-01 4 859606 859722 117 - 2.347 2.431 0.279
ENSG00000178950 E025 297.8824750 0.0012114883 8.790544e-03 5.290677e-02 4 865122 865244 123 - 2.353 2.429 0.255
ENSG00000178950 E026 277.0980876 0.0015830830 1.654509e-02 8.379315e-02 4 866364 866501 138 - 2.322 2.398 0.254
ENSG00000178950 E027 96.0055728 0.0005503777 2.472315e-02 1.113645e-01 4 866502 866534 33 - 1.845 1.943 0.330
ENSG00000178950 E028 460.8349502 0.0001836354 2.670109e-03 2.140306e-02 4 866956 867346 391 - 2.555 2.614 0.197
ENSG00000178950 E029 274.1933707 0.0002061798 8.150990e-01 9.052828e-01 4 867347 867432 86 - 2.373 2.379 0.018
ENSG00000178950 E030 332.8040330 0.0001873576 2.942792e-01 5.348678e-01 4 868539 868685 147 - 2.444 2.467 0.079
ENSG00000178950 E031 4.8469791 0.1877104514 3.980277e-01 6.267723e-01 4 868686 869957 1272 - 0.821 0.665 -0.635
ENSG00000178950 E032 385.6329292 0.0001657409 4.684882e-01 6.790207e-01 4 870711 870904 194 - 2.536 2.520 -0.051
ENSG00000178950 E033 0.4458772 0.0217681645 7.303778e-01   4 872266 872773 508 - 0.193 0.137 -0.598
ENSG00000178950 E034 237.8485504 0.0002500401 1.731443e-03 1.523991e-02 4 876530 876609 80 - 2.376 2.294 -0.274
ENSG00000178950 E035 282.7314544 0.0002604762 4.488205e-04 5.212340e-03 4 877090 877207 118 - 2.451 2.365 -0.285
ENSG00000178950 E036 300.1465898 0.0002943691 3.370006e-02 1.380677e-01 4 877615 877809 195 - 2.452 2.401 -0.173
ENSG00000178950 E037 220.5487221 0.0002584494 9.123300e-01 9.583087e-01 4 881907 882040 134 - 2.287 2.284 -0.011
ENSG00000178950 E038 185.7969991 0.0014917620 7.084658e-01 8.408192e-01 4 882697 882767 71 - 2.221 2.205 -0.054
ENSG00000178950 E039 177.1904943 0.0006117096 3.247443e-01 5.640135e-01 4 882768 882819 52 - 2.211 2.178 -0.111
ENSG00000178950 E040 307.1604495 0.0028943446 2.357894e-02 1.077917e-01 4 883315 883463 149 - 2.483 2.401 -0.274
ENSG00000178950 E041 190.4837709 0.0012513054 4.571103e-04 5.288165e-03 4 884037 884086 50 - 2.301 2.184 -0.391
ENSG00000178950 E042 19.0695203 0.1161374407 6.833117e-01 8.247832e-01 4 884087 884390 304 - 1.285 1.225 -0.210
ENSG00000178950 E043 106.3323672 0.0943993981 6.601943e-02 2.161734e-01 4 885783 888846 3064 - 2.137 1.891 -0.826
ENSG00000178950 E044 255.0703156 0.0002760974 3.217834e-05 5.731120e-04 4 888847 888970 124 - 2.423 2.317 -0.353
ENSG00000178950 E045 181.3589022 0.0003970089 2.058755e-01 4.369099e-01 4 890532 890622 91 - 2.230 2.191 -0.130
ENSG00000178950 E046 144.9698702 0.0004024762 8.631546e-01 9.320856e-01 4 893377 893418 42 - 2.109 2.102 -0.021
ENSG00000178950 E047 147.8590259 0.0003631174 8.498530e-01 9.248967e-01 4 893419 893489 71 - 2.118 2.112 -0.021
ENSG00000178950 E048 142.4978778 0.0003674372 8.637595e-04 8.800998e-03 4 893874 893942 69 - 2.177 2.066 -0.370
ENSG00000178950 E049 155.6626198 0.0003368391 1.585710e-04 2.201882e-03 4 893943 894009 67 - 2.220 2.100 -0.401
ENSG00000178950 E050 23.3700577 0.1534671062 2.489962e-02 1.119328e-01 4 894010 894827 818 - 1.600 1.176 -1.471
ENSG00000178950 E051 104.3342844 0.0021925223 1.626429e-03 1.450733e-02 4 896460 896468 9 - 2.061 1.926 -0.453
ENSG00000178950 E052 181.3310834 0.0005764940 6.542077e-05 1.048109e-03 4 896469 896549 81 - 2.288 2.167 -0.405
ENSG00000178950 E053 4.0575388 0.3176924037 2.484793e-01 4.862776e-01 4 897976 898032 57 - 0.847 0.573 -1.138
ENSG00000178950 E054 133.0114667 0.0003239609 2.844978e-03 2.247246e-02 4 898033 898061 29 - 2.140 2.037 -0.343
ENSG00000178950 E055 162.4037935 0.0002889009 2.700203e-04 3.427435e-03 4 898062 898158 97 - 2.232 2.118 -0.380
ENSG00000178950 E056 78.3227011 0.0038731648 1.525081e-01 3.659596e-01 4 904637 904652 16 - 1.889 1.812 -0.259
ENSG00000178950 E057 92.4799216 0.0025483527 2.840119e-01 5.244862e-01 4 904653 904686 34 - 1.942 1.890 -0.176
ENSG00000178950 E058 121.7774061 0.0045531771 5.107381e-02 1.822625e-01 4 904687 904774 88 - 2.092 1.996 -0.320
ENSG00000178950 E059 66.1106948 0.0006697665 3.043023e-02 1.286365e-01 4 904775 904779 5 - 1.838 1.733 -0.357
ENSG00000178950 E060 0.4950181 0.0217681645 7.280317e-01   4 904780 904781 2 - 0.194 0.137 -0.598
ENSG00000178950 E061 89.4381914 0.0004696555 4.166398e-04 4.893831e-03 4 911673 911718 46 - 1.997 1.851 -0.491
ENSG00000178950 E062 100.7249946 0.0003985509 1.029656e-02 5.939515e-02 4 911719 911787 69 - 2.018 1.917 -0.341
ENSG00000178950 E063 0.8569551 0.0197423343 4.640477e-01   4 911788 911842 55 - 0.327 0.192 -1.011
ENSG00000178950 E064 1.1000980 0.0146441992 3.062284e-01   4 912030 912084 55 - 0.429 0.241 -1.183
ENSG00000178950 E065 1.5827294 0.0121989077 7.245996e-01 8.508696e-01 4 912085 912174 90 - 0.327 0.395 0.399
ENSG00000178950 E066 2.4800206 0.3110002660 7.952304e-01 8.935010e-01 4 912462 912734 273 - 0.425 0.526 0.510
ENSG00000178950 E067 94.8259100 0.0005258222 1.216192e-01 3.184206e-01 4 912735 912794 60 - 1.966 1.902 -0.216
ENSG00000178950 E068 104.5824728 0.0004901192 3.537180e-01 5.905891e-01 4 913607 913668 62 - 1.930 1.968 0.127
ENSG00000178950 E069 0.0000000       4 913669 914029 361 -      
ENSG00000178950 E070 0.0000000       4 915498 915756 259 -      
ENSG00000178950 E071 157.0104989 0.0003435241 4.863044e-03 3.388825e-02 4 932043 932373 331 - 2.063 2.159 0.324