ENSG00000177728

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000314256 ENSG00000177728 HEK293_OSMI2_6hA HEK293_TMG_6hB TMEM94 protein_coding protein_coding 37.02765 48.73337 26.08426 2.444087 2.347006 -0.9014738 5.729801 8.717215 1.1954018 2.3880172 1.1954018 -2.85600718 0.15158333 0.17916667 0.04046667 -0.138700000 0.229453813 9.335427e-05 FALSE TRUE
ENST00000577247 ENSG00000177728 HEK293_OSMI2_6hA HEK293_TMG_6hB TMEM94 protein_coding protein_coding 37.02765 48.73337 26.08426 2.444087 2.347006 -0.9014738 5.696528 8.008280 0.1407015 1.8848822 0.1407015 -5.73352693 0.13390000 0.16293333 0.00520000 -0.157733333 0.009647268 9.335427e-05 FALSE TRUE
ENST00000581085 ENSG00000177728 HEK293_OSMI2_6hA HEK293_TMG_6hB TMEM94 protein_coding retained_intron 37.02765 48.73337 26.08426 2.444087 2.347006 -0.9014738 3.231788 4.279520 3.8634773 0.9737124 0.3946476 -0.14718697 0.09343750 0.08720000 0.15156667 0.064366667 0.435026164 9.335427e-05 FALSE TRUE
ENST00000581723 ENSG00000177728 HEK293_OSMI2_6hA HEK293_TMG_6hB TMEM94 protein_coding retained_intron 37.02765 48.73337 26.08426 2.444087 2.347006 -0.9014738 4.116911 3.340539 2.1621761 2.0249228 1.1475991 -0.62525226 0.10586667 0.07006667 0.07580000 0.005733333 1.000000000 9.335427e-05 FALSE FALSE
MSTRG.15072.2 ENSG00000177728 HEK293_OSMI2_6hA HEK293_TMG_6hB TMEM94 protein_coding   37.02765 48.73337 26.08426 2.444087 2.347006 -0.9014738 3.166800 6.600815 3.2273769 0.3700090 0.2943720 -1.03000288 0.08742917 0.13623333 0.12586667 -0.010366667 0.937743072 9.335427e-05 FALSE TRUE
MSTRG.15072.9 ENSG00000177728 HEK293_OSMI2_6hA HEK293_TMG_6hB TMEM94 protein_coding   37.02765 48.73337 26.08426 2.444087 2.347006 -0.9014738 2.212504 3.644284 3.4788621 0.7157952 0.6137909 -0.06683218 0.06157917 0.07590000 0.13886667 0.062966667 0.558694259 9.335427e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000177728 E001 0.0000000       17 75441159 75441243 85 +      
ENSG00000177728 E002 0.3336024 0.0274424043 5.650216e-01   17 75456619 75456634 16 + 0.000 0.152 9.863
ENSG00000177728 E003 0.3336024 0.0274424043 5.650216e-01   17 75456635 75456640 6 + 0.000 0.152 12.462
ENSG00000177728 E004 0.5115862 0.0209303764 8.766421e-01   17 75456641 75456645 5 + 0.175 0.152 -0.246
ENSG00000177728 E005 0.5115862 0.0209303764 8.766421e-01   17 75456646 75456646 1 + 0.175 0.152 -0.246
ENSG00000177728 E006 0.5115862 0.0209303764 8.766421e-01   17 75456647 75456648 2 + 0.175 0.152 -0.246
ENSG00000177728 E007 0.8866948 0.0174527735 6.393185e-01   17 75456649 75456649 1 + 0.175 0.265 0.757
ENSG00000177728 E008 0.8866948 0.0174527735 6.393185e-01   17 75456650 75456652 3 + 0.175 0.265 0.757
ENSG00000177728 E009 1.2320637 0.0363457467 9.500210e-01   17 75456653 75456653 1 + 0.300 0.313 0.086
ENSG00000177728 E010 3.1768501 0.0077613688 1.421115e-01 3.505769e-01 17 75456654 75456659 6 + 0.396 0.659 1.255
ENSG00000177728 E011 64.4401810 0.0010020899 8.657901e-02 2.575434e-01 17 75456660 75456751 92 + 1.830 1.754 -0.257
ENSG00000177728 E012 2.3075312 0.0121269736 8.321764e-01 9.150965e-01 17 75457294 75457477 184 + 0.475 0.518 0.210
ENSG00000177728 E013 0.2922838 0.0267942727 5.194817e-01   17 75457478 75457685 208 + 0.175 0.082 -1.248
ENSG00000177728 E014 0.0000000       17 75459707 75459770 64 +      
ENSG00000177728 E015 101.6215293 0.0025663311 2.101177e-02 9.939503e-02 17 75471800 75471863 64 + 2.037 1.943 -0.318
ENSG00000177728 E016 123.8676935 0.0004081236 3.957794e-03 2.891056e-02 17 75471864 75471929 66 + 2.121 2.029 -0.308
ENSG00000177728 E017 2.0537552 0.0119921368 3.901810e-03 2.860423e-02 17 75471930 75471955 26 + 0.737 0.265 -2.412
ENSG00000177728 E018 0.0000000       17 75476498 75476546 49 +      
ENSG00000177728 E019 0.1426347 0.0317547306 2.014259e-01   17 75476547 75476689 143 + 0.175 0.000 -13.948
ENSG00000177728 E020 0.1426347 0.0317547306 2.014259e-01   17 75476690 75476743 54 + 0.175 0.000 -13.948
ENSG00000177728 E021 0.3751086 0.0271184989 5.605729e-01   17 75485396 75485427 32 + 0.000 0.152 12.468
ENSG00000177728 E022 149.8736869 0.0003401807 1.836329e-02 9.023201e-02 17 75485428 75485547 120 + 2.189 2.122 -0.224
ENSG00000177728 E023 0.7782622 0.0627417504 2.745937e-02   17 75485548 75485780 233 + 0.474 0.083 -3.237
ENSG00000177728 E024 123.8703537 0.0030051836 4.654009e-01 6.768674e-01 17 75485871 75485998 128 + 2.078 2.051 -0.089
ENSG00000177728 E025 13.4732152 0.1516578151 2.931080e-01 5.338246e-01 17 75485999 75486289 291 + 1.224 1.077 -0.528
ENSG00000177728 E026 93.0009813 0.0004513857 4.650758e-02 1.713058e-01 17 75486290 75486331 42 + 1.986 1.914 -0.242
ENSG00000177728 E027 80.9759454 0.0009075477 2.239189e-01 4.581101e-01 17 75486332 75486344 13 + 1.906 1.858 -0.161
ENSG00000177728 E028 140.0079839 0.0003695930 8.325766e-01 9.152452e-01 17 75486345 75486426 82 + 2.109 2.108 -0.003
ENSG00000177728 E029 2.3558594 0.0995019124 5.781299e-01 7.559313e-01 17 75487278 75487380 103 + 0.396 0.524 0.649
ENSG00000177728 E030 199.1316295 0.0015604145 1.224309e-02 6.740884e-02 17 75487932 75488134 203 + 2.313 2.236 -0.256
ENSG00000177728 E031 137.4697774 0.0004155968 7.689825e-02 2.385920e-01 17 75488759 75488910 152 + 2.137 2.084 -0.176
ENSG00000177728 E032 133.1590753 0.0004594956 1.560413e-01 3.709634e-01 17 75489266 75489368 103 + 2.116 2.074 -0.141
ENSG00000177728 E033 129.8020518 0.0034123549 3.210691e-02 1.335315e-01 17 75489576 75489662 87 + 2.135 2.046 -0.300
ENSG00000177728 E034 2.4397523 0.1050847518 1.920099e-01 4.193749e-01 17 75489801 75489817 17 + 0.653 0.400 -1.210
ENSG00000177728 E035 6.6211969 0.0352211892 1.445541e-01 3.542424e-01 17 75490058 75490233 176 + 0.978 0.766 -0.816
ENSG00000177728 E036 115.8927896 0.0006942773 1.844644e-02 9.052013e-02 17 75490234 75490279 46 + 2.082 2.001 -0.269
ENSG00000177728 E037 129.5924562 0.0004157319 1.080200e-01 2.957372e-01 17 75490280 75490350 71 + 2.109 2.061 -0.163
ENSG00000177728 E038 115.7279636 0.0004536619 1.502507e-01 3.626600e-01 17 75490702 75490758 57 + 2.060 2.014 -0.153
ENSG00000177728 E039 139.1796363 0.0003525247 2.877509e-01 5.284832e-01 17 75491049 75491153 105 + 2.129 2.100 -0.096
ENSG00000177728 E040 117.5592515 0.0004070720 3.919305e-01 6.219695e-01 17 75491303 75491376 74 + 2.052 2.028 -0.082
ENSG00000177728 E041 133.8805486 0.0003380439 2.809342e-01 5.211887e-01 17 75491377 75491455 79 + 2.111 2.081 -0.100
ENSG00000177728 E042 28.5993697 0.0012800996 5.190689e-01 7.144002e-01 17 75491456 75491467 12 + 1.460 1.421 -0.134
ENSG00000177728 E043 82.4054307 0.0004899920 1.104716e-01 2.997486e-01 17 75491691 75491698 8 + 1.924 1.864 -0.204
ENSG00000177728 E044 181.9594221 0.0002345052 6.832480e-03 4.385653e-02 17 75491699 75491852 154 + 2.272 2.203 -0.233
ENSG00000177728 E045 99.8382494 0.0003933790 6.344357e-01 7.931933e-01 17 75491853 75491900 48 + 1.975 1.963 -0.039
ENSG00000177728 E046 22.7844970 0.0091694132 4.165111e-05 7.122462e-04 17 75491901 75492203 303 + 1.547 1.207 -1.182
ENSG00000177728 E047 7.8865030 0.0498763220 2.828977e-03 2.236617e-02 17 75492204 75492238 35 + 1.172 0.734 -1.649
ENSG00000177728 E048 8.4550525 0.0039963751 4.079392e-05 6.999137e-04 17 75492239 75492275 37 + 1.201 0.749 -1.692
ENSG00000177728 E049 10.7875193 0.0316936064 8.295552e-04 8.523054e-03 17 75492276 75492337 62 + 1.278 0.854 -1.546
ENSG00000177728 E050 10.7055790 0.0660802287 8.079224e-02 2.464016e-01 17 75492338 75492473 136 + 1.189 0.937 -0.916
ENSG00000177728 E051 150.7540908 0.0003314588 8.225031e-02 2.492166e-01 17 75492474 75492559 86 + 2.178 2.130 -0.159
ENSG00000177728 E052 220.9061377 0.0010802314 4.819335e-01 6.883496e-01 17 75492560 75492789 230 + 2.319 2.305 -0.046
ENSG00000177728 E053 17.4930745 0.1077948653 1.201920e-01 3.161562e-01 17 75492790 75492928 139 + 1.376 1.151 -0.788
ENSG00000177728 E054 207.2826164 0.0002608826 1.900526e-01 4.170098e-01 17 75492929 75493102 174 + 2.301 2.273 -0.096
ENSG00000177728 E055 84.0030358 0.0433029668 8.206955e-02 2.488726e-01 17 75493103 75493490 388 + 1.999 1.833 -0.557
ENSG00000177728 E056 175.0072976 0.0003301802 8.642823e-01 9.327576e-01 17 75493491 75493593 103 + 2.205 2.206 0.004
ENSG00000177728 E057 224.5622267 0.0003003172 7.720624e-01 8.798278e-01 17 75493699 75493916 218 + 2.306 2.319 0.046
ENSG00000177728 E058 123.5006557 0.0003648484 8.485904e-02 2.543420e-01 17 75494627 75494709 83 + 2.010 2.079 0.230
ENSG00000177728 E059 140.4659490 0.0002951238 5.831209e-02 1.990019e-01 17 75494710 75494808 99 + 2.062 2.132 0.235
ENSG00000177728 E060 0.6238610 0.0195401440 3.920194e-01   17 75494888 75494895 8 + 0.300 0.152 -1.246
ENSG00000177728 E061 182.7129085 0.0002572072 8.990169e-01 9.513687e-01 17 75494896 75495034 139 + 2.220 2.230 0.035
ENSG00000177728 E062 88.4529106 0.0006790006 7.265641e-01 8.521516e-01 17 75495284 75495286 3 + 1.919 1.911 -0.028
ENSG00000177728 E063 178.1687972 0.0005554211 9.807108e-01 9.921284e-01 17 75495287 75495399 113 + 2.209 2.216 0.021
ENSG00000177728 E064 1.0815047 0.0523706321 1.540499e-01   17 75495542 75495543 2 + 0.474 0.212 -1.656
ENSG00000177728 E065 154.0219699 0.0123537201 5.947200e-01 7.668575e-01 17 75495544 75495643 100 + 2.131 2.157 0.087
ENSG00000177728 E066 2.3971486 0.0087699805 5.749403e-02 1.971531e-01 17 75495644 75495965 322 + 0.697 0.392 -1.439
ENSG00000177728 E067 165.3172547 0.0037110005 3.488731e-01 5.862872e-01 17 75495966 75496074 109 + 2.152 2.193 0.138
ENSG00000177728 E068 4.9671489 0.0427274899 9.280959e-02 2.689580e-01 17 75496075 75496281 207 + 0.902 0.641 -1.048
ENSG00000177728 E069 144.5465543 0.0008296554 5.216401e-01 7.160240e-01 17 75496282 75496333 52 + 2.106 2.134 0.095
ENSG00000177728 E070 216.2377350 0.0039898911 4.703138e-01 6.803014e-01 17 75496334 75496471 138 + 2.273 2.310 0.123
ENSG00000177728 E071 0.3032425 0.0244411696 5.654903e-01   17 75496728 75496729 2 + 0.000 0.152 12.485
ENSG00000177728 E072 132.6535217 0.0050131528 2.859207e-01 5.265568e-01 17 75496730 75496807 78 + 2.046 2.106 0.201
ENSG00000177728 E073 137.6110559 0.0016527165 1.361941e-01 3.416580e-01 17 75497113 75497165 53 + 2.058 2.122 0.215
ENSG00000177728 E074 108.3410511 0.0006208661 2.685955e-01 5.082759e-01 17 75497166 75497198 33 + 1.966 2.016 0.168
ENSG00000177728 E075 91.9423979 0.0004125917 9.127261e-01 9.584599e-01 17 75497781 75497802 22 + 1.929 1.931 0.008
ENSG00000177728 E076 148.8724031 0.0025752954 5.664629e-01 7.476368e-01 17 75497803 75497862 60 + 2.117 2.147 0.101
ENSG00000177728 E077 152.1570633 0.0011330135 1.727534e-01 3.941463e-01 17 75498175 75498216 42 + 2.110 2.165 0.186
ENSG00000177728 E078 155.0125858 0.0022961940 1.524002e-01 3.658126e-01 17 75498217 75498261 45 + 2.111 2.175 0.213
ENSG00000177728 E079 179.5591126 0.0002690022 9.249858e-02 2.683910e-01 17 75498262 75498323 62 + 2.178 2.234 0.189
ENSG00000177728 E080 114.0166469 0.0003868488 5.041668e-02 1.806527e-01 17 75498444 75498455 12 + 1.963 2.043 0.269
ENSG00000177728 E081 216.1979402 0.0002226724 1.172585e-01 3.112308e-01 17 75498456 75498538 83 + 2.264 2.313 0.163
ENSG00000177728 E082 14.0888429 0.0041893034 1.816848e-02 8.958209e-02 17 75498539 75498547 9 + 1.288 1.074 -0.760
ENSG00000177728 E083 19.9936963 0.0094374576 1.533019e-01 3.670614e-01 17 75498548 75498628 81 + 1.369 1.248 -0.424
ENSG00000177728 E084 228.3443082 0.0007998513 1.014447e-04 1.513720e-03 17 75498629 75498722 94 + 2.234 2.355 0.405
ENSG00000177728 E085 12.8683126 0.0725066870 3.483488e-01 5.857969e-01 17 75498723 75498911 189 + 1.197 1.058 -0.497
ENSG00000177728 E086 280.7144072 0.0002456126 6.350274e-04 6.883588e-03 17 75498912 75499082 171 + 2.347 2.437 0.298
ENSG00000177728 E087 7.0983029 0.0177328469 2.633625e-02 1.162957e-01 17 75499083 75499118 36 + 0.600 0.944 1.386
ENSG00000177728 E088 739.3054373 0.0024984549 1.772215e-07 6.192651e-06 17 75499262 75500452 1191 + 2.722 2.868 0.485