ENSG00000177084

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000320574 ENSG00000177084 HEK293_OSMI2_6hA HEK293_TMG_6hB POLE protein_coding protein_coding 58.91814 80.99953 45.54783 2.169333 0.5643938 -0.8303925 21.778118 30.092977 18.2254573 3.048932 2.6856817 -0.7231598 0.39426667 0.37046667 0.40000000 0.02953333 0.95598367 5.53199e-18 FALSE TRUE
ENST00000434528 ENSG00000177084 HEK293_OSMI2_6hA HEK293_TMG_6hB POLE protein_coding nonsense_mediated_decay 58.91814 80.99953 45.54783 2.169333 0.5643938 -0.8303925 6.962032 7.027776 2.8390239 1.706081 0.4241446 -1.3046519 0.10748333 0.08646667 0.06216667 -0.02430000 0.83291790 5.53199e-18 FALSE TRUE
ENST00000545015 ENSG00000177084 HEK293_OSMI2_6hA HEK293_TMG_6hB POLE protein_coding retained_intron 58.91814 80.99953 45.54783 2.169333 0.5643938 -0.8303925 3.419764 4.500467 5.7684234 1.618475 1.2385194 0.3573991 0.06387917 0.05636667 0.12600000 0.06963333 0.35296525 5.53199e-18 FALSE TRUE
ENST00000672002 ENSG00000177084 HEK293_OSMI2_6hA HEK293_TMG_6hB POLE protein_coding nonsense_mediated_decay 58.91814 80.99953 45.54783 2.169333 0.5643938 -0.8303925 10.209034 21.590459 0.6930139 3.975763 0.6930139 -4.9413650 0.14115833 0.26546667 0.01490000 -0.25056667 0.04912732 5.53199e-18 FALSE TRUE
MSTRG.8357.2 ENSG00000177084 HEK293_OSMI2_6hA HEK293_TMG_6hB POLE protein_coding   58.91814 80.99953 45.54783 2.169333 0.5643938 -0.8303925 6.745121 4.704207 11.3652515 1.908787 3.7241676 1.2708114 0.12852500 0.05846667 0.25060000 0.19213333 0.14960250 5.53199e-18 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000177084 E001 6.0335973 0.0051367952 6.958026e-01 8.328044e-01 12 132623753 132623761 9 - 0.781 0.839 0.228
ENSG00000177084 E002 10.4546145 0.0031186187 2.288282e-03 1.897568e-02 12 132623762 132623767 6 - 0.747 1.123 1.421
ENSG00000177084 E003 13.0079789 0.0026459031 1.086715e-03 1.057710e-02 12 132623768 132623775 8 - 0.842 1.210 1.353
ENSG00000177084 E004 861.6009248 0.0027255695 1.549218e-07 5.494839e-06 12 132623776 132624262 487 - 2.799 2.953 0.511
ENSG00000177084 E005 778.9426026 0.0018419161 1.725869e-19 4.696991e-17 12 132624263 132624554 292 - 2.695 2.929 0.781
ENSG00000177084 E006 555.9153459 0.0012524070 9.819693e-18 2.154535e-15 12 132624555 132624689 135 - 2.565 2.779 0.711
ENSG00000177084 E007 291.8747010 0.0021590357 1.542841e-10 1.051404e-08 12 132624690 132624705 16 - 2.284 2.502 0.725
ENSG00000177084 E008 462.2736508 0.0024563522 1.124401e-12 1.137279e-10 12 132624706 132624810 105 - 2.476 2.701 0.749
ENSG00000177084 E009 1.9631872 0.0146367393 4.269355e-03 3.065816e-02 12 132624811 132624904 94 - 0.000 0.572 11.821
ENSG00000177084 E010 406.9463498 0.0015466976 5.713291e-11 4.249882e-09 12 132624905 132624994 90 - 2.451 2.637 0.621
ENSG00000177084 E011 17.1911055 0.1065706096 7.625397e-01 8.741089e-01 12 132624995 132625297 303 - 1.159 1.266 0.379
ENSG00000177084 E012 13.3264984 0.1131540566 8.310029e-01 9.143482e-01 12 132625298 132625419 122 - 1.130 1.135 0.019
ENSG00000177084 E013 11.9413805 0.0524228168 6.228976e-01 7.857594e-01 12 132625420 132625644 225 - 1.128 1.061 -0.241
ENSG00000177084 E014 424.8565425 0.0011176711 5.275203e-09 2.635631e-07 12 132625645 132625770 126 - 2.495 2.646 0.503
ENSG00000177084 E015 3.7981900 0.0072716495 5.425164e-01 7.308941e-01 12 132625771 132625951 181 - 0.709 0.622 -0.372
ENSG00000177084 E016 526.6662940 0.0014076745 5.390657e-08 2.133933e-06 12 132626117 132626266 150 - 2.596 2.736 0.464
ENSG00000177084 E017 316.3262663 0.0007734051 2.860642e-05 5.176926e-04 12 132626267 132626310 44 - 2.396 2.507 0.371
ENSG00000177084 E018 214.4919244 0.0002216465 2.640261e-05 4.831129e-04 12 132626311 132626317 7 - 2.223 2.343 0.400
ENSG00000177084 E019 434.5343074 0.0004545797 3.633752e-06 8.741956e-05 12 132632315 132632437 123 - 2.540 2.643 0.341
ENSG00000177084 E020 189.4409093 0.0003612985 2.711447e-01 5.111575e-01 12 132632438 132632447 10 - 2.228 2.266 0.125
ENSG00000177084 E021 257.4723542 0.0005681965 2.780513e-04 3.509678e-03 12 132632448 132632488 41 - 2.316 2.418 0.340
ENSG00000177084 E022 197.9368398 0.0002921402 6.261031e-07 1.889581e-05 12 132632489 132632507 19 - 2.169 2.318 0.497
ENSG00000177084 E023 155.1030493 0.0019677144 3.345880e-06 8.154527e-05 12 132632508 132632508 1 - 2.037 2.221 0.616
ENSG00000177084 E024 12.4281597 0.0690673493 5.817463e-01 7.582325e-01 12 132632509 132632663 155 - 1.146 1.076 -0.250
ENSG00000177084 E025 457.0110198 0.0001695759 4.089003e-13 4.514998e-11 12 132632664 132632795 132 - 2.534 2.678 0.480
ENSG00000177084 E026 4.6464423 0.0867167807 2.883174e-01 5.290601e-01 12 132632796 132633970 1175 - 0.571 0.785 0.900
ENSG00000177084 E027 0.9706349 0.0155095561 3.782900e-01   12 132633971 132634185 215 - 0.164 0.330 1.310
ENSG00000177084 E028 664.6466115 0.0001783537 4.980341e-08 1.988583e-06 12 132634186 132634378 193 - 2.732 2.825 0.309
ENSG00000177084 E029 541.7696004 0.0004062459 4.498277e-01 6.655610e-01 12 132635892 132636024 133 - 2.694 2.714 0.064
ENSG00000177084 E030 1.0293295 0.0153787590 9.838419e-01   12 132636025 132636025 1 - 0.282 0.281 -0.009
ENSG00000177084 E031 468.9674795 0.0009136599 3.092717e-01 5.497613e-01 12 132638014 132638139 126 - 2.626 2.653 0.090
ENSG00000177084 E032 3.5825216 0.0486976439 7.499638e-01 8.667617e-01 12 132638140 132639124 985 - 0.671 0.620 -0.221
ENSG00000177084 E033 458.5069534 0.0005206129 8.295594e-01 9.135261e-01 12 132639125 132639298 174 - 2.628 2.638 0.031
ENSG00000177084 E034 48.5082680 0.0694362213 3.151186e-01 5.551919e-01 12 132641018 132641383 366 - 1.730 1.635 -0.323
ENSG00000177084 E035 28.8416074 0.1489535779 7.666257e-01 8.765836e-01 12 132641384 132641646 263 - 1.433 1.457 0.083
ENSG00000177084 E036 558.6738634 0.0006633526 5.824976e-01 7.586967e-01 12 132641647 132641851 205 - 2.710 2.725 0.051
ENSG00000177084 E037 626.9480166 0.0001818559 2.280947e-01 4.630704e-01 12 132642177 132642397 221 - 2.754 2.779 0.083
ENSG00000177084 E038 587.2383326 0.0001562845 8.097155e-04 8.361709e-03 12 132642506 132642729 224 - 2.702 2.763 0.204
ENSG00000177084 E039 414.9352300 0.0002085803 4.472298e-03 3.178314e-02 12 132642820 132642996 177 - 2.549 2.611 0.205
ENSG00000177084 E040 297.1669557 0.0010258604 4.808540e-02 1.751911e-01 12 132643224 132643330 107 - 2.406 2.464 0.193
ENSG00000177084 E041 384.1092578 0.0013490262 6.522589e-01 8.048868e-01 12 132643407 132643560 154 - 2.546 2.562 0.052
ENSG00000177084 E042 428.2639793 0.0008439540 4.901870e-01 6.941308e-01 12 132643837 132643977 141 - 2.612 2.600 -0.038
ENSG00000177084 E043 3.0016084 0.1137059316 2.866992e-01 5.274186e-01 12 132648546 132648928 383 - 0.710 0.512 -0.875
ENSG00000177084 E044 360.8827036 0.0001948999 2.490212e-01 4.868054e-01 12 132648929 132649072 144 - 2.544 2.526 -0.059
ENSG00000177084 E045 161.4926828 0.0004031257 3.968774e-01 6.258111e-01 12 132649306 132649320 15 - 2.165 2.197 0.108
ENSG00000177084 E046 181.8162193 0.0002840401 1.348998e-01 3.395247e-01 12 132649321 132649352 32 - 2.204 2.253 0.165
ENSG00000177084 E047 311.5098774 0.0004163759 6.682484e-02 2.179115e-01 12 132649353 132649515 163 - 2.436 2.485 0.163
ENSG00000177084 E048 382.5921086 0.0001637703 4.641829e-01 6.759875e-01 12 132649677 132649889 213 - 2.564 2.555 -0.028
ENSG00000177084 E049 2.1225777 0.1140705850 2.429563e-01 4.799403e-01 12 132650283 132651407 1125 - 0.282 0.545 1.454
ENSG00000177084 E050 315.2225792 0.0019104372 8.819984e-02 2.603891e-01 12 132657136 132657258 123 - 2.504 2.457 -0.157
ENSG00000177084 E051 257.5611459 0.0014688967 1.253325e-02 6.856628e-02 12 132657349 132657429 81 - 2.431 2.362 -0.232
ENSG00000177084 E052 288.0804471 0.0014445520 6.358946e-02 2.108018e-01 12 132657868 132657970 103 - 2.467 2.419 -0.161
ENSG00000177084 E053 0.7448680 0.2179325340 5.338196e-01   12 132657971 132658674 704 - 0.284 0.167 -0.981
ENSG00000177084 E054 0.0000000       12 132658692 132658743 52 -      
ENSG00000177084 E055 392.1811218 0.0001871084 7.462805e-02 2.340281e-01 12 132659295 132659505 211 - 2.588 2.559 -0.097
ENSG00000177084 E056 109.9610963 0.0005335153 5.939507e-03 3.944566e-02 12 132659506 132659509 4 - 2.081 1.988 -0.312
ENSG00000177084 E057 7.5678277 0.3045302022 2.691272e-01 5.088908e-01 12 132659510 132660913 1404 - 1.038 0.822 -0.815
ENSG00000177084 E058 372.0307453 0.0003453022 6.005474e-03 3.974852e-02 12 132660969 132661164 196 - 2.579 2.527 -0.173
ENSG00000177084 E059 390.1418687 0.0008527384 3.181532e-06 7.813410e-05 12 132661527 132661680 154 - 2.632 2.530 -0.340
ENSG00000177084 E060 175.7820155 0.0018164358 5.894264e-06 1.328995e-04 12 132661681 132661684 4 - 2.315 2.167 -0.497
ENSG00000177084 E061 347.7713299 0.0008553532 2.798660e-09 1.486169e-07 12 132664004 132664148 145 - 2.603 2.466 -0.456
ENSG00000177084 E062 235.8009380 0.0001916352 3.326430e-08 1.383891e-06 12 132664370 132664462 93 - 2.430 2.302 -0.426
ENSG00000177084 E063 273.0477336 0.0024265507 1.056711e-02 6.052816e-02 12 132665302 132665450 149 - 2.463 2.383 -0.267
ENSG00000177084 E064 304.0865196 0.0001920279 2.583180e-06 6.519295e-05 12 132667503 132667648 146 - 2.520 2.423 -0.321
ENSG00000177084 E065 339.0232088 0.0003117390 2.660288e-05 4.862535e-04 12 132668356 132668502 147 - 2.561 2.478 -0.279
ENSG00000177084 E066 273.4948964 0.0029493976 2.444332e-03 1.997324e-02 12 132668635 132668737 103 - 2.476 2.377 -0.329
ENSG00000177084 E067 274.3106842 0.0009814437 9.089396e-06 1.931901e-04 12 132668811 132668939 129 - 2.486 2.373 -0.376
ENSG00000177084 E068 3.7126702 0.2224193840 1.321476e-01 3.351960e-01 12 132669339 132669456 118 - 0.836 0.523 -1.327
ENSG00000177084 E069 189.8534876 0.0026187379 7.135561e-05 1.127974e-03 12 132672215 132672280 66 - 2.342 2.203 -0.463
ENSG00000177084 E070 145.3924790 0.0016307087 2.774424e-04 3.503056e-03 12 132672281 132672322 42 - 2.218 2.093 -0.417
ENSG00000177084 E071 13.5026138 0.1815145875 3.412465e-01 5.792023e-01 12 132672544 132672579 36 - 1.240 1.076 -0.586
ENSG00000177084 E072 24.0807398 0.1281938550 2.062935e-01 4.373377e-01 12 132672580 132672626 47 - 1.513 1.282 -0.802
ENSG00000177084 E073 311.4385343 0.0026035184 1.131557e-05 2.332376e-04 12 132672627 132672839 213 - 2.555 2.418 -0.456
ENSG00000177084 E074 222.3514190 0.0024333159 4.231197e-05 7.216576e-04 12 132673164 132673277 114 - 2.408 2.273 -0.450
ENSG00000177084 E075 220.4936820 0.0003389234 2.153990e-06 5.571078e-05 12 132673575 132673707 133 - 2.395 2.279 -0.386
ENSG00000177084 E076 208.6135863 0.0003542414 1.468709e-08 6.640592e-07 12 132675398 132675517 120 - 2.387 2.244 -0.476
ENSG00000177084 E077 2.0169805 0.0126020849 7.747601e-02 2.398281e-01 12 132675518 132675734 217 - 0.624 0.330 -1.498
ENSG00000177084 E078 191.3932421 0.0002518411 8.984703e-12 7.790200e-10 12 132675735 132675820 86 - 2.369 2.193 -0.588
ENSG00000177084 E079 0.6238610 0.0196038639 4.835577e-01   12 132675821 132676085 265 - 0.282 0.163 -1.012
ENSG00000177084 E080 0.9004865 0.2624482341 6.017633e-01   12 132676086 132676093 8 - 0.164 0.287 1.032
ENSG00000177084 E081 191.3614570 0.0005315209 4.342782e-14 5.788887e-12 12 132676094 132676184 91 - 2.385 2.181 -0.682
ENSG00000177084 E082 120.2987228 0.0048850308 1.142252e-06 3.187325e-05 12 132676185 132676204 20 - 2.195 1.971 -0.749
ENSG00000177084 E083 0.8397668 0.0178500398 5.292940e-01   12 132676205 132676498 294 - 0.164 0.281 0.990
ENSG00000177084 E084 231.8011846 0.0025055395 2.035145e-14 2.853960e-12 12 132676546 132676653 108 - 2.494 2.241 -0.844
ENSG00000177084 E085 207.6802613 0.0012132334 6.299214e-19 1.589527e-16 12 132677363 132677443 81 - 2.450 2.190 -0.865
ENSG00000177084 E086 263.3597610 0.0038651831 6.620933e-08 2.568852e-06 12 132677578 132677719 142 - 2.518 2.321 -0.660
ENSG00000177084 E087 0.9161448 0.0157267547 3.903082e-01   12 132678452 132678569 118 - 0.376 0.225 -1.014
ENSG00000177084 E088 251.5186854 0.0019599312 4.745189e-07 1.478881e-05 12 132679497 132679651 155 - 2.471 2.317 -0.512
ENSG00000177084 E089 194.0857465 0.0028931589 2.293647e-10 1.506824e-08 12 132679954 132680046 93 - 2.402 2.174 -0.759
ENSG00000177084 E090 152.6057698 0.0049797318 8.537985e-10 5.059128e-08 12 132680178 132680222 45 - 2.321 2.051 -0.904
ENSG00000177084 E091 4.8921168 0.4583417142 8.363656e-01 9.174323e-01 12 132680531 132680606 76 - 0.667 0.782 0.471
ENSG00000177084 E092 190.1625241 0.0021698361 8.133573e-12 7.101634e-10 12 132680607 132680687 81 - 2.395 2.167 -0.763
ENSG00000177084 E093 3.9631875 0.3425897473 5.659762e-01 7.473546e-01 12 132681028 132681137 110 - 0.768 0.626 -0.594
ENSG00000177084 E094 185.7887373 0.0016119756 5.929401e-09 2.917846e-07 12 132681138 132681279 142 - 2.361 2.179 -0.610
ENSG00000177084 E095 98.7707547 0.0025999251 7.600429e-05 1.188844e-03 12 132687254 132687335 82 - 2.078 1.913 -0.554
ENSG00000177084 E096 28.7400311 0.0064278085 2.651935e-01 5.045480e-01 12 132687336 132687410 75 - 1.501 1.422 -0.273
ENSG00000177084 E097 2.2402306 1.0082702345 4.884786e-01 6.929784e-01 12 132687746 132687793 48 - 0.817 0.159 -3.651