ENSG00000177030

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000382409 ENSG00000177030 HEK293_OSMI2_6hA HEK293_TMG_6hB DEAF1 protein_coding protein_coding 132.4206 199.7397 64.3584 41.27808 2.107772 -1.633769 23.30507 36.45585 4.405931 7.269057 0.8615426 -3.045757 0.1743333 0.1835667 0.06903333 -0.11453333 0.009352763 0.009352763 FALSE TRUE
ENST00000682936 ENSG00000177030 HEK293_OSMI2_6hA HEK293_TMG_6hB DEAF1 protein_coding retained_intron 132.4206 199.7397 64.3584 41.27808 2.107772 -1.633769 79.42212 119.51382 43.918439 24.905792 2.0797476 -1.444071 0.5893750 0.5973000 0.68173333 0.08443333 0.114335681 0.009352763 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000177030 E001 0.1426347 3.241895e-02 1.063968e-01   11 644184 644185 2 - 0.217 0.000 -11.103
ENSG00000177030 E002 2.0649358 1.044424e-02 6.934547e-01 8.313279e-01 11 644186 644232 47 - 0.362 0.441 0.438
ENSG00000177030 E003 7.0156731 2.257056e-02 1.514827e-01 3.644892e-01 11 644233 644233 1 - 0.627 0.873 0.996
ENSG00000177030 E004 8.1098018 1.758821e-02 6.850060e-01 8.259189e-01 11 644234 644234 1 - 0.835 0.900 0.250
ENSG00000177030 E005 44.9342953 2.026572e-03 6.890115e-01 8.284480e-01 11 644235 644238 4 - 1.549 1.579 0.102
ENSG00000177030 E006 51.3599087 6.625206e-03 2.830807e-01 5.235269e-01 11 644239 644243 5 - 1.564 1.642 0.263
ENSG00000177030 E007 59.2310686 9.434588e-03 4.675481e-01 6.784499e-01 11 644244 644246 3 - 1.647 1.696 0.167
ENSG00000177030 E008 149.1037721 1.464011e-03 8.520860e-02 2.550118e-01 11 644247 644272 26 - 2.023 2.097 0.245
ENSG00000177030 E009 162.7703238 3.761194e-04 3.863625e-02 1.512070e-01 11 644273 644294 22 - 2.057 2.137 0.266
ENSG00000177030 E010 181.9890316 4.676618e-04 5.293696e-03 3.615634e-02 11 644295 644305 11 - 2.086 2.188 0.341
ENSG00000177030 E011 195.3377415 2.861126e-04 5.310655e-03 3.625031e-02 11 644306 644306 1 - 2.119 2.216 0.324
ENSG00000177030 E012 1358.6795177 1.047823e-04 1.121707e-03 1.083262e-02 11 644307 644654 348 - 3.001 3.046 0.147
ENSG00000177030 E013 11.6978812 1.388347e-02 7.477938e-01 8.653610e-01 11 646285 646326 42 - 0.976 1.013 0.137
ENSG00000177030 E014 75.4147798 5.855556e-04 8.690774e-01 9.354715e-01 11 646327 646555 229 - 1.779 1.792 0.041
ENSG00000177030 E015 1.7014509 2.485503e-01 1.185055e-01 3.133933e-01 11 646556 646596 41 - 0.000 0.421 12.524
ENSG00000177030 E016 2.2415594 3.749056e-01 8.328029e-01 9.153749e-01 11 648412 648602 191 - 0.473 0.426 -0.241
ENSG00000177030 E017 1.5868612 3.660559e-01 5.646576e-01 7.465531e-01 11 649901 649942 42 - 0.467 0.326 -0.791
ENSG00000177030 E018 2.0749144 1.843552e-01 7.305326e-01 8.545330e-01 11 649943 650019 77 - 0.365 0.437 0.397
ENSG00000177030 E019 33.4154298 1.118186e-03 5.355780e-01 7.260139e-01 11 651162 651407 246 - 1.481 1.440 -0.141
ENSG00000177030 E020 26.2468343 7.239129e-03 3.377622e-01 5.761029e-01 11 651651 651741 91 - 1.410 1.324 -0.301
ENSG00000177030 E021 13.8199231 2.860340e-03 5.444976e-01 7.323113e-01 11 651742 651777 36 - 1.126 1.063 -0.226
ENSG00000177030 E022 35.3852551 1.790494e-03 1.479543e-05 2.946645e-04 11 651778 651946 169 - 1.680 1.395 -0.976
ENSG00000177030 E023 4.8498170 5.677028e-03 8.397501e-02 2.527406e-01 11 653941 653961 21 - 0.875 0.623 -1.023
ENSG00000177030 E024 961.5118695 3.236133e-04 6.849017e-01 8.258755e-01 11 653962 654051 90 - 2.878 2.886 0.027
ENSG00000177030 E025 28.4207488 1.221918e-03 5.074429e-02 1.814488e-01 11 659435 659796 362 - 1.490 1.347 -0.493
ENSG00000177030 E026 9.8041096 3.164321e-03 7.268354e-01 8.523232e-01 11 674372 674535 164 - 0.911 0.961 0.188
ENSG00000177030 E027 1570.9591415 1.213654e-04 3.828905e-01 6.146259e-01 11 674536 674783 248 - 3.089 3.101 0.042
ENSG00000177030 E028 953.6369360 1.097374e-04 6.740761e-01 8.189674e-01 11 678694 678822 129 - 2.877 2.886 0.031
ENSG00000177030 E029 1059.6772149 1.245515e-04 1.728465e-01 3.942687e-01 11 679688 679816 129 - 2.942 2.925 -0.054
ENSG00000177030 E030 28.9803791 2.103826e-03 1.045571e-01 2.898914e-01 11 679882 679977 96 - 1.481 1.362 -0.411
ENSG00000177030 E031 31.0617520 1.969871e-03 1.371190e-01 3.431361e-01 11 679978 680074 97 - 1.499 1.394 -0.362
ENSG00000177030 E032 1117.7529211 8.763152e-05 2.203505e-02 1.027021e-01 11 680963 681089 127 - 2.974 2.947 -0.090
ENSG00000177030 E033 8.0005453 4.102746e-03 4.527929e-01 6.677433e-01 11 683576 684897 1322 - 0.945 0.850 -0.362
ENSG00000177030 E034 826.0901719 2.532417e-04 5.176642e-02 1.839187e-01 11 684898 684963 66 - 2.845 2.815 -0.100
ENSG00000177030 E035 821.3762814 1.437445e-04 2.023609e-02 9.669577e-02 11 686858 686920 63 - 2.845 2.812 -0.112
ENSG00000177030 E036 936.9954696 9.209864e-05 4.673822e-04 5.377344e-03 11 686921 686997 77 - 2.913 2.866 -0.154
ENSG00000177030 E037 534.5236116 1.688019e-04 3.825546e-03 2.817040e-02 11 687911 687911 1 - 2.674 2.622 -0.173
ENSG00000177030 E038 1092.2618258 9.237114e-05 2.673364e-02 1.174762e-01 11 687912 688049 138 - 2.964 2.938 -0.085
ENSG00000177030 E039 461.7572676 1.177353e-03 4.727365e-01 6.819850e-01 11 688050 688057 8 - 2.549 2.572 0.077
ENSG00000177030 E040 2.8830750 2.390369e-02 3.896864e-01 6.202205e-01 11 688058 688208 151 - 0.362 0.533 0.891
ENSG00000177030 E041 945.1106254 1.174412e-03 4.856903e-01 6.910419e-01 11 688331 688460 130 - 2.862 2.879 0.058
ENSG00000177030 E042 15.7463869 2.636736e-02 7.362918e-02 2.320140e-01 11 689663 689813 151 - 1.299 1.074 -0.799
ENSG00000177030 E043 580.3043346 2.296408e-03 4.084464e-01 6.348489e-01 11 691501 691598 98 - 2.643 2.669 0.088
ENSG00000177030 E044 1.9093173 1.111082e-02 6.568551e-01 8.078846e-01 11 691599 691647 49 - 0.470 0.387 -0.437
ENSG00000177030 E045 0.8810853 2.728717e-02 3.000879e-01   11 692250 692543 294 - 0.000 0.256 12.206
ENSG00000177030 E046 1.3437183 2.060876e-01 7.915231e-01   11 692544 693028 485 - 0.362 0.296 -0.414
ENSG00000177030 E047 12.2411144 3.117350e-03 6.681136e-02 2.178940e-01 11 693489 693663 175 - 1.185 0.991 -0.703
ENSG00000177030 E048 26.0464275 1.298661e-03 6.858484e-01 8.263822e-01 11 694679 694758 80 - 1.364 1.335 -0.100
ENSG00000177030 E049 400.0972553 1.441818e-03 7.060644e-12 6.241852e-10 11 694759 695274 516 - 2.325 2.540 0.719
ENSG00000177030 E050 0.4812263 2.148856e-02 5.544274e-01   11 697486 697999 514 - 0.218 0.121 -1.025
ENSG00000177030 E051 0.0000000       11 706572 707118 547 -