ENSG00000176225

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000255674 ENSG00000176225 HEK293_OSMI2_6hA HEK293_TMG_6hB RTTN protein_coding protein_coding 4.713337 2.989756 6.455144 0.7642929 0.16906 1.107837 1.45174290 0.5536644 2.7204434 0.1991224 0.3398265 2.2762270 0.28530000 0.17770000 0.41930000 0.24160000 0.01149138 0.01149138 FALSE TRUE
ENST00000579986 ENSG00000176225 HEK293_OSMI2_6hA HEK293_TMG_6hB RTTN protein_coding nonsense_mediated_decay 4.713337 2.989756 6.455144 0.7642929 0.16906 1.107837 1.30536716 0.9519197 1.0611980 0.2741091 0.1930910 0.1552368 0.31275833 0.31150000 0.16350000 -0.14800000 0.14452481 0.01149138 FALSE TRUE
ENST00000581161 ENSG00000176225 HEK293_OSMI2_6hA HEK293_TMG_6hB RTTN protein_coding nonsense_mediated_decay 4.713337 2.989756 6.455144 0.7642929 0.16906 1.107837 0.43696030 0.2870010 0.4870090 0.1478172 0.2462155 0.7428043 0.09282083 0.12783333 0.07416667 -0.05366667 0.95804763 0.01149138 FALSE TRUE
ENST00000583043 ENSG00000176225 HEK293_OSMI2_6hA HEK293_TMG_6hB RTTN protein_coding nonsense_mediated_decay 4.713337 2.989756 6.455144 0.7642929 0.16906 1.107837 0.28377474 0.1303035 0.8391489 0.1303035 0.5561335 2.5974667 0.05446250 0.04773333 0.13443333 0.08670000 0.79483635 0.01149138 TRUE TRUE
ENST00000639128 ENSG00000176225 HEK293_OSMI2_6hA HEK293_TMG_6hB RTTN protein_coding retained_intron 4.713337 2.989756 6.455144 0.7642929 0.16906 1.107837 0.07573964 0.2912707 0.0000000 0.2912707 0.0000000 -4.9129883 0.01547083 0.06583333 0.00000000 -0.06583333 0.76885872 0.01149138 TRUE TRUE
ENST00000677824 ENSG00000176225 HEK293_OSMI2_6hA HEK293_TMG_6hB RTTN protein_coding protein_coding 4.713337 2.989756 6.455144 0.7642929 0.16906 1.107837 0.42057982 0.3701983 0.4335380 0.1228778 0.2171521 0.2223058 0.08518333 0.12570000 0.06580000 -0.05990000 0.74310003 0.01149138 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000176225 E001 0.1779838 0.0349285590 1.000000e+00   18 70003031 70003070 40 - 0.088 0.000 -10.534
ENSG00000176225 E002 1.5113636 0.0120632950 4.659872e-01 6.772445e-01 18 70003071 70003803 733 - 0.327 0.456 0.726
ENSG00000176225 E003 0.3336024 0.0244411696 6.685997e-02   18 70003804 70003804 1 - 0.000 0.285 13.576
ENSG00000176225 E004 0.3336024 0.0244411696 6.685997e-02   18 70003805 70003819 15 - 0.000 0.285 13.576
ENSG00000176225 E005 0.3336024 0.0244411696 6.685997e-02   18 70003820 70003829 10 - 0.000 0.285 13.576
ENSG00000176225 E006 0.6188717 0.0309220443 4.796444e-01   18 70003830 70003839 10 - 0.161 0.285 1.050
ENSG00000176225 E007 5.0487003 0.0158365210 6.198181e-02 2.072321e-01 18 70003840 70003858 19 - 0.661 0.924 1.046
ENSG00000176225 E008 9.5027471 0.0522525357 3.085184e-01 5.490868e-01 18 70003859 70003883 25 - 0.936 1.110 0.640
ENSG00000176225 E009 15.4460613 0.0025986369 1.874469e-01 4.136654e-01 18 70003884 70003968 85 - 1.154 1.270 0.411
ENSG00000176225 E010 40.2220856 0.0011042047 4.617192e-03 3.256251e-02 18 70003969 70004168 200 - 1.529 1.688 0.543
ENSG00000176225 E011 31.9311826 0.0025878072 1.885344e-04 2.546121e-03 18 70004169 70004236 68 - 1.394 1.636 0.827
ENSG00000176225 E012 29.5047474 0.0085759564 5.226337e-02 1.849808e-01 18 70005198 70005267 70 - 1.395 1.550 0.536
ENSG00000176225 E013 1.9523690 0.0323245067 3.983881e-01 6.269603e-01 18 70005268 70006380 1113 - 0.371 0.524 0.792
ENSG00000176225 E014 31.0184986 0.0144259102 1.434768e-02 7.568858e-02 18 70006381 70006474 94 - 1.394 1.609 0.738
ENSG00000176225 E015 17.4829709 0.0030923420 1.393709e-02 7.409486e-02 18 70006475 70006484 10 - 1.160 1.367 0.726
ENSG00000176225 E016 3.0180903 0.2010608258 9.845588e-02 2.790772e-01 18 70006485 70007066 582 - 0.412 0.793 1.718
ENSG00000176225 E017 4.9639971 0.0055211286 2.624760e-03 2.111833e-02 18 70007376 70009032 1657 - 0.567 0.971 1.633
ENSG00000176225 E018 45.0877117 0.0011381019 1.675919e-04 2.307147e-03 18 70017407 70017590 184 - 1.554 1.757 0.690
ENSG00000176225 E019 26.1056415 0.0014426711 2.215243e-02 1.031154e-01 18 70017591 70017643 53 - 1.340 1.500 0.553
ENSG00000176225 E020 18.6480779 0.0256468328 1.330241e-01 3.365446e-01 18 70017644 70017672 29 - 1.203 1.365 0.569
ENSG00000176225 E021 14.9769569 0.0179540642 1.489231e-02 7.768065e-02 18 70017673 70017674 2 - 1.069 1.327 0.914
ENSG00000176225 E022 0.5173834 0.0458209254 2.755659e-01   18 70019290 70019501 212 - 0.224 0.000 -12.108
ENSG00000176225 E023 0.5941213 0.0220803375 7.559640e-01   18 70019502 70019920 419 - 0.223 0.165 -0.540
ENSG00000176225 E024 43.5528259 0.0014224766 1.139377e-02 6.396445e-02 18 70020615 70020817 203 - 1.559 1.701 0.484
ENSG00000176225 E025 0.3559677 0.4684747072 6.240762e-01   18 70020818 70020845 28 - 0.165 0.000 -11.557
ENSG00000176225 E026 0.6648197 0.5401829720 1.000000e+00   18 70020846 70021160 315 - 0.231 0.161 -0.642
ENSG00000176225 E027 0.0000000       18 70022204 70022248 45 -      
ENSG00000176225 E028 28.4756119 0.0015378511 4.099066e-01 6.359370e-01 18 70024722 70024848 127 - 1.417 1.474 0.196
ENSG00000176225 E029 23.6962850 0.0018433918 4.570058e-01 6.710483e-01 18 70028724 70028801 78 - 1.344 1.400 0.194
ENSG00000176225 E030 33.4266224 0.0010413620 4.114607e-02 1.577230e-01 18 70030012 70030109 98 - 1.460 1.586 0.433
ENSG00000176225 E031 33.7974067 0.0011002339 2.290825e-02 1.056365e-01 18 70030876 70030981 106 - 1.457 1.597 0.481
ENSG00000176225 E032 0.0000000       18 70031302 70031414 113 -      
ENSG00000176225 E033 41.2971255 0.0011582963 5.548570e-03 3.746620e-02 18 70047971 70048188 218 - 1.532 1.689 0.535
ENSG00000176225 E034 26.6010826 0.0020095002 3.147982e-01 5.549612e-01 18 70051411 70051548 138 - 1.382 1.454 0.246
ENSG00000176225 E035 0.1308682 0.0314927631 2.342767e-01   18 70053295 70053514 220 - 0.000 0.165 12.573
ENSG00000176225 E036 26.1547305 0.0021537583 2.500478e-01 4.879951e-01 18 70054131 70054284 154 - 1.378 1.460 0.283
ENSG00000176225 E037 0.0000000       18 70056319 70056387 69 -      
ENSG00000176225 E038 25.9733107 0.0013786113 8.800455e-01 9.412578e-01 18 70057742 70057832 91 - 1.398 1.408 0.034
ENSG00000176225 E039 39.0314371 0.0009212359 2.094360e-01 4.412047e-01 18 70059850 70060034 185 - 1.595 1.519 -0.262
ENSG00000176225 E040 16.1176917 0.0020235583 2.397643e-01 4.763806e-01 18 70060035 70060042 8 - 1.240 1.131 -0.388
ENSG00000176225 E041 0.0000000       18 70061312 70061400 89 -      
ENSG00000176225 E042 14.3840615 0.0024795147 1.582148e-01 3.740881e-01 18 70065829 70065842 14 - 1.205 1.067 -0.495
ENSG00000176225 E043 23.8106294 0.0014957829 7.080027e-01 8.405385e-01 18 70065843 70065922 80 - 1.378 1.349 -0.102
ENSG00000176225 E044 25.6836021 0.0013923540 8.887359e-01 9.460304e-01 18 70073906 70073994 89 - 1.391 1.400 0.033
ENSG00000176225 E045 0.0000000       18 70074759 70075351 593 -      
ENSG00000176225 E046 27.4382167 0.0047901233 5.002630e-01 7.009365e-01 18 70075352 70075541 190 - 1.410 1.460 0.172
ENSG00000176225 E047 0.3393995 0.0274424043 4.889144e-01   18 70078609 70078738 130 - 0.161 0.000 -11.519
ENSG00000176225 E048 18.4958054 0.0230518137 6.961404e-01 8.330443e-01 18 70086613 70086684 72 - 1.246 1.285 0.138
ENSG00000176225 E049 28.7581687 0.0017290892 2.135249e-01 4.458173e-01 18 70087989 70088147 159 - 1.473 1.384 -0.309
ENSG00000176225 E050 0.0000000       18 70091545 70091680 136 -      
ENSG00000176225 E051 18.6485414 0.0017920663 4.623427e-01 6.747718e-01 18 70092110 70092186 77 - 1.288 1.224 -0.223
ENSG00000176225 E052 12.5734811 0.0025970939 6.143220e-01 7.797743e-01 18 70092187 70092220 34 - 1.118 1.067 -0.184
ENSG00000176225 E053 22.1004458 0.0610731748 3.539958e-01 5.908269e-01 18 70092676 70092804 129 - 1.368 1.254 -0.398
ENSG00000176225 E054 32.4247154 0.0105896348 8.775026e-01 9.399706e-01 18 70109498 70109717 220 - 1.482 1.499 0.057
ENSG00000176225 E055 25.2274144 0.0018167107 7.034795e-03 4.479556e-02 18 70114445 70114599 155 - 1.308 1.501 0.668
ENSG00000176225 E056 22.7276352 0.0105024245 1.207178e-01 3.169921e-01 18 70121556 70121700 145 - 1.288 1.434 0.508
ENSG00000176225 E057 29.7236013 0.0137263849 4.085176e-01 6.348786e-01 18 70127502 70127741 240 - 1.479 1.418 -0.209
ENSG00000176225 E058 0.1426347 0.0320610465 1.000000e+00   18 70128054 70128098 45 - 0.088 0.000 -10.516
ENSG00000176225 E059 36.7051597 0.0010967183 4.518665e-01 6.670143e-01 18 70128358 70128546 189 - 1.559 1.513 -0.160
ENSG00000176225 E060 0.6378404 0.0248803648 7.604953e-01   18 70128547 70131932 3386 - 0.224 0.166 -0.537
ENSG00000176225 E061 22.3510503 0.0016308447 5.084592e-01 7.068209e-01 18 70134473 70134541 69 - 1.353 1.302 -0.180
ENSG00000176225 E062 19.3584540 0.0020839230 1.298954e-01 3.316728e-01 18 70135184 70135280 97 - 1.317 1.187 -0.459
ENSG00000176225 E063 0.0000000       18 70135281 70135290 10 -      
ENSG00000176225 E064 0.3088520 0.0274455002 5.948041e-01   18 70138263 70138955 693 - 0.088 0.165 1.042
ENSG00000176225 E065 23.2585868 0.0014631384 3.443081e-03 2.600232e-02 18 70139599 70139716 118 - 1.425 1.187 -0.832
ENSG00000176225 E066 0.0000000       18 70139717 70139932 216 -      
ENSG00000176225 E067 20.0662980 0.0017584798 5.133941e-04 5.799264e-03 18 70140100 70140188 89 - 1.378 1.067 -1.101
ENSG00000176225 E068 20.7467445 0.0021027148 7.040038e-03 4.482119e-02 18 70142288 70142387 100 - 1.378 1.146 -0.817
ENSG00000176225 E069 24.9347102 0.0016541376 5.596985e-02 1.935799e-01 18 70145612 70145783 172 - 1.428 1.281 -0.513
ENSG00000176225 E070 29.5136168 0.0233097887 2.236123e-01 4.577559e-01 18 70148901 70149037 137 - 1.489 1.371 -0.406
ENSG00000176225 E071 25.1441635 0.0164285662 2.384428e-02 1.086246e-01 18 70149971 70150087 117 - 1.451 1.225 -0.788
ENSG00000176225 E072 0.7743180 0.0176047096 5.408619e-01   18 70150088 70150152 65 - 0.278 0.165 -0.956
ENSG00000176225 E073 20.9922320 0.0020857030 2.274851e-03 1.889290e-02 18 70150608 70150733 126 - 1.383 1.116 -0.939
ENSG00000176225 E074 20.3357822 0.0103129026 8.750436e-02 2.591022e-01 18 70166062 70166188 127 - 1.356 1.187 -0.593
ENSG00000176225 E075 0.1723744 0.0472311334 2.338510e-01   18 70166434 70166918 485 - 0.000 0.166 12.578
ENSG00000176225 E076 17.7106332 0.0292677138 3.570251e-01 5.932898e-01 18 70166919 70167031 113 - 1.289 1.170 -0.421
ENSG00000176225 E077 15.9372053 0.0023012484 1.086570e-01 2.968543e-01 18 70168855 70168973 119 - 1.251 1.100 -0.538
ENSG00000176225 E078 14.5546685 0.0024032672 2.502090e-03 2.034729e-02 18 70168974 70169067 94 - 1.240 0.926 -1.142
ENSG00000176225 E079 21.5519260 0.0063096747 6.339397e-04 6.873805e-03 18 70176675 70176845 171 - 1.407 1.084 -1.140
ENSG00000176225 E080 21.2186541 0.0022660921 3.419288e-06 8.314342e-05 18 70188108 70188223 116 - 1.421 0.992 -1.527
ENSG00000176225 E081 26.1417718 0.0015514612 2.796260e-07 9.269361e-06 18 70190538 70190719 182 - 1.511 1.084 -1.499
ENSG00000176225 E082 1.1446249 0.0272175789 8.318614e-01   18 70193011 70193287 277 - 0.326 0.286 -0.269
ENSG00000176225 E083 17.3309963 0.0023036216 3.297256e-05 5.851707e-04 18 70193288 70193453 166 - 1.340 0.925 -1.492
ENSG00000176225 E084 0.6412370 0.0280266396 1.619881e-01   18 70194146 70194736 591 - 0.278 0.000 -12.518
ENSG00000176225 E085 12.9952621 0.0097858220 2.260912e-01 4.607034e-01 18 70196501 70196648 148 - 1.166 1.031 -0.488
ENSG00000176225 E086 13.2577149 0.0028426219 1.833876e-01 4.082992e-01 18 70197624 70197738 115 - 1.167 1.031 -0.492
ENSG00000176225 E087 14.2888452 0.0572347172 3.518655e-01 5.889289e-01 18 70199414 70199504 91 - 1.203 1.053 -0.539
ENSG00000176225 E088 13.0963534 0.0299478639 4.511172e-01 6.664296e-01 18 70201894 70201983 90 - 1.159 1.050 -0.391
ENSG00000176225 E089 20.1262206 0.0045364698 2.324213e-01 4.679869e-01 18 70204086 70204263 178 - 1.331 1.225 -0.372
ENSG00000176225 E090 18.6705147 0.0176249514 4.023744e-01 6.302916e-01 18 70205128 70205315 188 - 1.297 1.202 -0.335
ENSG00000176225 E091 8.7265370 0.0356972501 8.368345e-01 9.176918e-01 18 70205628 70205726 99 - 0.956 0.975 0.073